FiT-DB / Search/ Help/ Sample detail

Os09g0469300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cupredoxin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.1 (0.0284) R2 : 0.512
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.05 (0.0533) R2dE : 0.421 R2E : 0.414
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.505 (0.0597) R2dN8 : 0.0984 R2N8 : 0.0918
σ : 0.533
deviance : 130.79
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.1758
memory length : 87
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
117.86 0.51 9.09 0.222 0.324 -1.12 -1.7 0.122 0.507 5.28 0.1798 97 -- --
117.89 0.506 9.09 0.22 0.322 -1.11 -1.67 -- 0.513 5.5 0.1701 98 -- --
123.9 0.518 9.09 0.206 0.36 -1.22 -- -0.171 0.502 3.61 0.17 97 -- --
123.93 0.518 9.09 0.223 0.403 -1.27 -- -- 0.53 3.31 0.17 97 -- --
130.09 0.531 9.05 0.26 -- -1.09 -- -0.136 0.595 -- 0.17 90 -- --
151.15 0.576 9.05 0.302 1.2 -- 0.0328 -- 0.599 11.7 -- -- -- --
151.15 0.576 9.05 0.303 1.2 -- -- -- 0.6 11.7 -- -- -- --
129.59 0.53 9.08 0.259 -- -1.1 -- -- 0.542 -- 0.18 91 -- --
125.07 0.521 9.1 -- 0.434 -1.26 -- -- 0.495 3.4 0.1715 97 -- --
241.53 0.726 9.08 0.269 -- -- -- -- 0.585 -- -- -- -- --
153.57 0.58 9.06 -- 1.2 -- -- -- 0.566 11.7 -- -- -- --
130.79 0.533 9.1 -- -- -1.05 -- -- 0.505 -- 0.1758 87 -- --
243.43 0.728 9.08 -- -- -- -- -- 0.555 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 108.39 wind 9.0 90 < th dose dependent rect. 19 10
2 108.64 radiation 1.0 90 < th dose dependent sin 10 NA
3 109.03 temperature 15.0 90 > th dose independent rect. 19 10
5 109.34 precipitation 0.1 90 < th dose independent rect. 19 10
6 109.34 precipitation 0.1 90 < th dose dependent rect. 19 10
7 109.40 temperature 15.0 270 > th dose dependent rect. 5 1
8 109.46 radiation 1.0 90 < th dose independent sin 10 NA
9 109.60 temperature 10.0 90 > th dose dependent rect. 5 4
10 109.63 temperature 10.0 90 > th dose dependent rect. 19 10
12 110.00 humidity 50.0 90 > th dose dependent rect. 5 4
13 110.03 radiation 20.0 90 < th dose independent rect. 5 4
14 110.28 precipitation 0.1 90 < th dose independent rect. 5 14
15 110.28 precipitation 0.1 90 < th dose dependent rect. 5 14
17 110.36 radiation 10.0 270 < th dose independent rect. 5 1
20 110.52 radiation 40.0 90 < th dose independent rect. 5 4
22 110.61 radiation 40.0 90 < th dose dependent rect. 5 4
23 110.80 humidity 70.0 90 > th dose independent rect. 5 4
25 110.93 wind 7.0 90 < th dose independent rect. 19 10
29 111.06 radiation 10.0 270 < th dose dependent rect. 5 1
32 111.13 precipitation 0.1 90 < th dose independent rect. 9 20
33 111.13 precipitation 0.1 90 < th dose dependent rect. 9 20
37 111.34 wind 9.0 90 < th dose independent rect. 5 4
38 111.34 temperature 10.0 90 > th dose independent rect. 5 4
41 111.34 atmosphere 995.0 90 > th dose independent rect. 5 4
42 111.34 atmosphere 1015.0 90 < th dose independent rect. 5 4
43 111.34 temperature 10.0 90 > th dose independent rect. 9 20
44 111.37 precipitation 0.1 90 < th dose independent rect. 5 4
46 111.37 precipitation 0.1 90 < th dose dependent rect. 5 4
47 111.39 radiation 1.0 90 < th dose dependent rect. 19 10
50 111.48 temperature 30.0 90 < th dose independent rect. 19 10
51 111.48 humidity 50.0 90 > th dose independent rect. 19 10
53 111.48 atmosphere 995.0 90 > th dose independent rect. 19 10
54 111.48 radiation 20.0 90 < th dose independent rect. 19 10
57 111.48 temperature 10.0 90 > th dose independent rect. 5 14
58 111.48 atmosphere 1015.0 90 < th dose independent rect. 5 14
59 111.49 radiation 40.0 90 < th dose dependent rect. 19 10
64 111.56 temperature 30.0 90 < th dose independent rect. 5 4
65 111.56 radiation 1.0 90 < th dose independent rect. 19 10
68 111.57 wind 9.0 90 < th dose dependent rect. 5 4
71 111.72 wind 9.0 90 < th dose independent rect. 5 14
73 111.91 humidity 50.0 90 > th dose dependent rect. 5 6
74 111.97 radiation 1.0 90 > th dose independent sin 10 NA
76 112.09 wind 9.0 90 < th dose independent rect. 9 20
90 112.86 wind 1.0 90 > th dose independent rect. 5 4
91 112.98 atmosphere 995.0 90 > th dose independent rect. 5 14
92 112.99 atmosphere 995.0 90 > th dose independent rect. 9 20
96 113.21 precipitation 0.1 270 < th dose independent rect. 6 23
97 113.21 precipitation 0.1 270 < th dose dependent rect. 6 23
103 113.60 radiation 1.0 90 < th dose dependent rect. 19 20
107 113.69 radiation 1.0 90 < th dose dependent rect. 19 18
110 113.74 temperature 20.0 270 > th dose independent rect. 5 2
114 113.77 humidity 50.0 90 > th dose independent rect. 9 20
120 113.89 humidity 80.0 270 > th dose independent rect. 3 6
125 114.01 humidity 70.0 270 > th dose dependent rect. 5 2
134 114.18 atmosphere 1010.0 270 < th dose independent rect. 5 1
154 114.53 precipitation 0.1 720 < th dose independent rect. 15 14
155 114.53 precipitation 0.1 720 < th dose dependent rect. 15 14
156 114.55 temperature 15.0 10 > th dose independent rect. 9 21
176 114.80 wind 9.0 90 < th dose dependent rect. 5 14
177 114.81 radiation 1.0 90 > th dose independent rect. 18 15
183 114.91 wind 7.0 270 < th dose independent rect. 5 1
185 114.91 temperature 10.0 270 > th dose independent rect. 5 1
187 114.91 temperature 30.0 270 < th dose independent rect. 5 1
188 114.91 humidity 50.0 270 > th dose independent rect. 5 1
191 114.91 atmosphere 995.0 270 > th dose independent rect. 5 1
196 114.91 precipitation 0.1 720 < th dose independent rect. 1 18
197 114.91 temperature 10.0 270 > th dose independent rect. 6 23
198 114.91 precipitation 0.1 720 < th dose dependent rect. 1 18
200 114.94 radiation 1.0 90 > th dose independent rect. 4 5
211 114.98 precipitation 0.1 270 < th dose independent rect. 5 1
213 114.98 precipitation 0.1 270 < th dose dependent rect. 5 1
227 115.24 temperature 10.0 270 > th dose dependent rect. 3 5
232 115.38 precipitation 0.1 10 < th dose independent rect. 9 21
233 115.38 precipitation 0.1 10 < th dose dependent rect. 9 21
234 115.43 atmosphere 995.0 90 > th dose dependent rect. 5 4
238 115.46 radiation 40.0 10 < th dose dependent rect. 6 3
239 115.46 humidity 60.0 270 > th dose dependent rect. 3 6
241 115.51 wind 9.0 10 < th dose dependent rect. 20 10
244 115.58 temperature 10.0 1440 > th dose independent rect. 6 4
247 115.58 atmosphere 995.0 1440 > th dose independent rect. 6 4
248 115.58 atmosphere 1015.0 1440 < th dose independent rect. 6 4
249 115.58 temperature 10.0 1440 > th dose independent rect. 10 20
270 115.71 humidity 50.0 1440 > th dose independent rect. 6 4
285 115.88 radiation 1.0 90 < th dose independent rect. 19 20
286 115.90 radiation 1.0 90 < th dose dependent rect. 17 12
303 116.13 wind 1.0 270 > th dose independent rect. 5 1
315 116.25 radiation 40.0 90 < th dose independent rect. 5 6
321 116.31 radiation 40.0 10 < th dose independent rect. 6 3
328 116.39 wind 9.0 270 < th dose dependent rect. 5 1
332 116.43 temperature 20.0 10 > th dose independent rect. 6 3
337 116.49 humidity 90.0 720 < th dose independent rect. 17 2
338 116.49 wind 9.0 10 < th dose dependent rect. 6 3
339 116.49 humidity 50.0 10 > th dose dependent rect. 6 3
367 116.63 precipitation 0.1 720 < th dose independent rect. 17 11
368 116.63 precipitation 0.1 720 < th dose dependent rect. 17 11
369 116.65 radiation 1.0 90 < th dose independent rect. 17 12
371 116.66 humidity 50.0 90 > th dose dependent rect. 19 10
372 116.69 humidity 70.0 720 > th dose independent rect. 19 14
383 116.83 temperature 15.0 10 > th dose independent rect. 20 10
393 116.93 wind 1.0 270 > th dose independent rect. 7 21
401 116.98 wind 3.0 10 < th dose independent rect. 6 3
404 117.03 precipitation 0.1 10 < th dose independent rect. 6 3
406 117.03 precipitation 0.1 10 < th dose dependent rect. 6 3
415 117.09 wind 7.0 10 < th dose independent rect. 6 3
417 117.09 temperature 10.0 10 > th dose independent rect. 6 3
419 117.09 temperature 30.0 10 < th dose independent rect. 6 3
420 117.09 humidity 50.0 10 > th dose independent rect. 6 3
422 117.09 atmosphere 995.0 10 > th dose independent rect. 6 3
423 117.09 atmosphere 1015.0 10 < th dose independent rect. 6 3
425 117.09 precipitation 0.1 720 < th dose independent rect. 7 14
427 117.09 precipitation 0.1 720 < th dose dependent rect. 7 14
441 117.19 radiation 1.0 90 < th dose dependent rect. 8 21
459 117.37 atmosphere 1010.0 90 < th dose independent rect. 19 10
466 117.40 radiation 40.0 270 < th dose dependent rect. 3 6
487 117.51 precipitation 0.1 10 < th dose independent rect. 20 10
493 117.51 precipitation 0.1 10 < th dose dependent rect. 20 10
516 117.74 radiation 1.0 90 < th dose dependent rect. 15 14
522 117.79 wind 1.0 10 > th dose independent rect. 5 4
527 117.85 radiation 1.0 10 > th dose independent rect. 6 3
532 117.90 atmosphere 1015.0 90 < th dose dependent rect. 5 4
565 118.06 temperature 10.0 10 > th dose dependent rect. 20 10
580 118.22 atmosphere 995.0 270 > th dose dependent rect. 5 1
589 118.30 radiation 1.0 90 < th dose independent rect. 8 21
612 118.37 radiation 20.0 10 < th dose dependent rect. 20 10
624 118.45 precipitation 0.1 720 < th dose independent rect. 9 10
632 118.45 precipitation 0.1 720 < th dose dependent rect. 9 10
635 118.47 wind 1.0 270 > th dose independent rect. 8 19
681 118.58 radiation 1.0 90 < th dose dependent rect. 17 22
731 118.80 wind 9.0 10 < th dose independent rect. 9 21
743 118.85 radiation 1.0 90 < th dose independent rect. 15 14
747 118.87 radiation 10.0 10 < th dose independent rect. 20 10
748 118.87 temperature 10.0 720 > th dose dependent rect. 17 2
787 119.06 humidity 70.0 720 > th dose independent rect. 19 6
802 119.12 precipitation 0.1 720 < th dose independent rect. 16 21
803 119.12 precipitation 0.1 720 < th dose dependent rect. 16 21
807 119.13 humidity 50.0 90 > th dose independent rect. 5 14
846 119.22 atmosphere 1015.0 90 < th dose independent rect. 9 20
848 119.24 precipitation 0.1 10 < th dose independent rect. 6 14
849 119.24 precipitation 0.1 10 < th dose dependent rect. 6 14
962 119.57 wind 1.0 720 > th dose independent rect. 17 2
983 119.66 wind 9.0 4320 < th dose independent rect. 6 3