Os06g0218600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cupredoxin domain containing protein.
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Os06g0218600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cupredoxin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1063.39 | 1.53 | 7.78 | -6.04 | 0.375 | -3.86 | 4.38 | 3.55 | -0.24 | 6.59 | 55 | 1252 | -- | -- |
| 1081.2 | 1.53 | 7.76 | -5.67 | 0.399 | -3.65 | 4.57 | -- | -0.168 | 6.91 | 55 | 1242 | -- | -- |
| 1108.24 | 1.55 | 7.8 | -5.99 | 0.506 | -3.66 | -- | 3.59 | -0.273 | 3.26 | 55 | 1327 | -- | -- |
| 1126.82 | 1.56 | 7.77 | -5.58 | 0.517 | -3.41 | -- | -- | -0.18 | 3.5 | 55.34 | 1330 | -- | -- |
| 1118.84 | 1.56 | 7.8 | -5.99 | -- | -3.86 | -- | 3.54 | -0.227 | -- | 54.5 | 1279 | -- | -- |
| 1376.85 | 1.74 | 7.71 | -5.42 | 0.78 | -- | 3.73 | -- | 0.0212 | 5.23 | -- | -- | -- | -- |
| 1394.19 | 1.75 | 7.73 | -5.43 | 0.945 | -- | -- | -- | -0.000376 | 2.95 | -- | -- | -- | -- |
| 1137.83 | 1.57 | 7.78 | -5.56 | -- | -3.65 | -- | -- | -0.178 | -- | 55.66 | 1281 | -- | -- |
| 1872.92 | 2.02 | 7.77 | -- | 0.807 | -4.57 | -- | -- | -0.0693 | 2.73 | 81 | 1450 | -- | -- |
| 1445.54 | 1.78 | 7.73 | -5.39 | -- | -- | -- | -- | 0.024 | -- | -- | -- | -- | -- |
| 2169.98 | 2.18 | 7.6 | -- | 0.838 | -- | -- | -- | 0.604 | 2.91 | -- | -- | -- | -- |
| 1893.59 | 2.03 | 7.73 | -- | -- | -4.6 | -- | -- | 0.00388 | -- | 80.58 | 1349 | -- | -- |
| 2210.49 | 2.19 | 7.59 | -- | -- | -- | -- | -- | 0.621 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1094.33 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 3 | 1097.03 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 4 | 1097.18 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 5 | 1097.34 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 9 | 1097.84 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 10 | 1098.09 | humidity | 50 | 1440 | > th | dose dependent | rect. | 1 | 22 |
| 18 | 1098.90 | humidity | 80 | 1440 | > th | dose independent | sin | 0 | NA |
| 29 | 1099.55 | humidity | 50 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 40 | 1099.91 | humidity | 50 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 41 | 1099.97 | humidity | 50 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 46 | 1100.24 | humidity | 50 | 1440 | > th | dose dependent | rect. | 7 | 23 |
| 51 | 1100.46 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 56 | 1100.76 | humidity | 80 | 1440 | < th | dose independent | sin | 0 | NA |
| 62 | 1100.84 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 69 | 1101.00 | humidity | 50 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 184 | 1104.56 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 22 |
| 294 | 1107.60 | humidity | 90 | 1440 | < th | dose dependent | rect. | 1 | 22 |
| 302 | 1107.84 | humidity | 60 | 1440 | > th | dose dependent | sin | 23 | NA |
| 333 | 1108.62 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 337 | 1108.69 | humidity | 50 | 1440 | > th | dose dependent | sin | 19 | NA |
| 359 | 1109.16 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 22 |
| 372 | 1109.42 | humidity | 90 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 384 | 1109.57 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |
| 407 | 1109.74 | humidity | 90 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 410 | 1109.76 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 414 | 1109.80 | humidity | 90 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 445 | 1110.27 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 12 |
| 447 | 1110.27 | humidity | 90 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 485 | 1110.81 | humidity | 90 | 1440 | < th | dose dependent | sin | 19 | NA |
| 613 | 1113.14 | humidity | 70 | 1440 | > th | dose dependent | rect. | 7 | 9 |
| 769 | 1116.51 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 814 | 1117.36 | humidity | 60 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 826 | 1117.62 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 894 | 1119.17 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 902 | 1119.27 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 16 |