Os03g0807500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cupredoxin domain containing protein.
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Os03g0807500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cupredoxin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.04 | 0.417 | 3.25 | -0.69 | 0.115 | 27.6 | -0.453 | -128 | 0.0647 | 3.01 | 1000 | 10 | 8 | 2 |
| 98.13 | 0.465 | 3.15 | -0.0997 | 0.0992 | 3.41 | -0.501 | -- | 0.067 | 3.08 | 1000 | 10 | 8 | 2 |
| 80.72 | 0.418 | 3.25 | -0.679 | 0.114 | 27.6 | -- | -128 | 0.067 | 2.8 | 1000 | 10 | 8.01 | 2 |
| 82.83 | 0.424 | 3.14 | -0.0969 | 0.105 | 5.95 | -- | -- | 0.0773 | 4.29 | 999 | 10 | 8 | 2.11 |
| 81.47 | 0.42 | 3.25 | -0.676 | -- | 27.6 | -- | -128 | 0.0669 | -- | 1000 | 10 | 8.01 | 2 |
| 129.9 | 0.534 | 3.15 | -0.0318 | 0.101 | -- | -0.504 | -- | 0.0411 | 3.28 | -- | -- | -- | -- |
| 130.41 | 0.535 | 3.15 | -0.022 | 0.127 | -- | -- | -- | 0.0435 | 5.56 | -- | -- | -- | -- |
| 83.37 | 0.425 | 3.14 | -0.0922 | -- | 6.05 | -- | -- | 0.0752 | -- | 999 | 9 | 8 | 2.04 |
| 82.79 | 0.424 | 3.14 | -- | 0.108 | 6.05 | -- | -- | 0.075 | 2.82 | 999 | 9 | 8.02 | 2.14 |
| 131.26 | 0.535 | 3.15 | -0.0179 | -- | -- | -- | -- | 0.0466 | -- | -- | -- | -- | -- |
| 130.43 | 0.534 | 3.15 | -- | 0.127 | -- | -- | -- | 0.046 | 5.57 | -- | -- | -- | -- |
| 83.52 | 0.426 | 3.14 | -- | -- | 6.03 | -- | -- | 0.075 | -- | 999 | 9 | 8.02 | 2.16 |
| 131.27 | 0.535 | 3.15 | -- | -- | -- | -- | -- | 0.0486 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 80.04 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 8 | 2 |
| 3 | 80.44 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 14 | 81.93 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 8 | 2 |
| 16 | 82.30 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 8 | 1 |
| 249 | 110.34 | temperature | 30 | 90 | > th | dose dependent | rect. | 18 | 16 |
| 252 | 110.51 | temperature | 30 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 288 | 110.65 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 1 |
| 377 | 111.02 | temperature | 30 | 90 | > th | dose independent | rect. | 18 | 16 |
| 564 | 113.52 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 22 | 12 |
| 606 | 114.12 | atmosphere | 1000 | 720 | < th | dose dependent | sin | 7 | NA |
| 716 | 115.25 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 2 | 9 |
| 755 | 115.68 | atmosphere | 1000 | 270 | < th | dose independent | sin | 4 | NA |
| 757 | 115.69 | atmosphere | 1000 | 270 | > th | dose independent | sin | 4 | NA |
| 825 | 116.15 | atmosphere | 1000 | 270 | < th | dose dependent | sin | 4 | NA |
| 830 | 116.18 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 3 | 8 |
| 861 | 116.39 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 2 | 9 |
| 886 | 116.61 | atmosphere | 1000 | 720 | < th | dose independent | sin | 8 | NA |
| 890 | 116.63 | atmosphere | 1000 | 720 | > th | dose independent | sin | 8 | NA |
| 947 | 116.98 | atmosphere | 1000 | 10 | < th | dose dependent | sin | 3 | NA |
| 975 | 117.10 | radiation | 30 | 270 | > th | dose independent | rect. | 7 | 1 |