Os08g0137800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cupredoxin domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0137800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Cupredoxin domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 168.22 | 0.609 | 3.95 | 2 | 0.637 | 33.9 | -1.21 | 94.7 | 0.0476 | 5.06 | 1.083 | 1351 | 10.9 | 0.99 |
| 244.47 | 0.734 | 3.21 | -0.765 | 0.669 | 2.48 | -1.42 | -- | -0.0831 | 4.76 | 0.01338 | 53 | 11.4 | 2.2 |
| 171.92 | 0.611 | 3.95 | 2.01 | 0.629 | 34 | -- | 95 | 0.0515 | 4.98 | 1.151 | 1355 | 10.9 | 0.95 |
| 194.39 | 0.649 | 3.19 | -0.701 | 0.633 | 2.22 | -- | -- | -0.0559 | 5.37 | 1.096 | 1282 | 11.2 | 2.33 |
| 192.66 | 0.646 | 3.97 | 2.09 | -- | 34.6 | -- | 96.8 | 0.0709 | -- | 0.6812 | 1363 | 11 | 0.833 |
| 250.51 | 0.742 | 3.21 | -0.796 | 0.663 | -- | -1.39 | -- | -0.0932 | 4.88 | -- | -- | -- | -- |
| 255.49 | 0.749 | 3.21 | -0.791 | 0.654 | -- | -- | -- | -0.0863 | 4.85 | -- | -- | -- | -- |
| 208.91 | 0.673 | 3.19 | -0.354 | -- | 2.31 | -- | -- | 0.0217 | -- | 2.791 | 1311 | 11.1 | 2.98 |
| 189.46 | 0.641 | 3.19 | -- | 0.618 | 2.66 | -- | -- | 0.0634 | 5.28 | 2.57 | 1270 | 11.1 | 2.97 |
| 278.04 | 0.779 | 3.21 | -0.767 | -- | -- | -- | -- | -0.0694 | -- | -- | -- | -- | -- |
| 271.99 | 0.771 | 3.19 | -- | 0.639 | -- | -- | -- | 0.00187 | 4.89 | -- | -- | -- | -- |
| 207.3 | 0.671 | 3.19 | -- | -- | 2.8 | -- | -- | 0.115 | -- | 2.506 | 1258 | 11.2 | 3.58 |
| 293.56 | 0.8 | 3.19 | -- | -- | -- | -- | -- | 0.0157 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 170.48 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 170.48 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 5 | 171.22 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 10 | 174.91 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 19 | 175.93 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 7 |
| 47 | 177.94 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 48 | 177.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 51 | 178.08 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 83 | 187.29 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 98 | 190.14 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 100 | 190.14 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 102 | 190.14 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 153 | 190.14 | humidity | 60 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 155 | 190.14 | humidity | 60 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 157 | 190.14 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 235 | 194.22 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 254 | 195.28 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 261 | 196.09 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 262 | 196.09 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 14 |
| 268 | 196.19 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 334 | 198.03 | humidity | 60 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 337 | 198.50 | radiation | 10 | 1440 | < th | dose dependent | sin | 19 | NA |
| 345 | 199.25 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 396 | 200.04 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 397 | 200.06 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 409 | 200.58 | humidity | 80 | 1440 | < th | dose independent | rect. | 1 | 14 |
| 438 | 201.45 | humidity | 60 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 448 | 201.62 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 450 | 201.67 | humidity | 60 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 456 | 201.73 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 470 | 201.74 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 490 | 201.96 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 15 |
| 495 | 202.14 | humidity | 60 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 496 | 202.15 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 566 | 202.89 | radiation | 10 | 1440 | > th | dose independent | sin | 22 | NA |
| 595 | 203.41 | humidity | 80 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 617 | 203.68 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 687 | 204.32 | humidity | 60 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 738 | 204.96 | humidity | 80 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 763 | 205.16 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 764 | 205.16 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 773 | 205.25 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 838 | 205.98 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 921 | 206.09 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 934 | 206.32 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 5 |