Os02g0653200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plastocyanin-like domain containing protein.
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Os02g0653200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plastocyanin-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 381.1 | 0.917 | 4.25 | 0.177 | 0.602 | -2.72 | -0.214 | -2.54 | 0.909 | 1.98 | 49.84 | 4455 | -- | -- |
| 386.71 | 0.916 | 4.26 | 0.248 | 0.56 | -2.44 | -0.153 | -- | 0.941 | 1.95 | 49.03 | 4423 | -- | -- |
| 377.87 | 0.905 | 4.21 | 0.00968 | 0.699 | -2.86 | -- | -3.45 | 0.978 | 1.01 | 49.67 | 5313 | -- | -- |
| 386.73 | 0.916 | 4.26 | 0.224 | 0.587 | -2.41 | -- | -- | 0.927 | 1.94 | 48.95 | 4423 | -- | -- |
| 400.58 | 0.932 | 4.23 | 0.098 | -- | -2.58 | -- | -2.69 | 0.906 | -- | 49.76 | 4854 | -- | -- |
| 463.41 | 1.01 | 4.24 | 0.537 | 0.589 | -- | -0.501 | -- | 1.01 | 1.96 | -- | -- | -- | -- |
| 464.3 | 1.01 | 4.24 | 0.553 | 0.587 | -- | -- | -- | 1.01 | 1.73 | -- | -- | -- | -- |
| 404.07 | 0.936 | 4.24 | 0.21 | -- | -2.29 | -- | -- | 1.01 | -- | 47 | 4782 | -- | -- |
| 387.93 | 0.917 | 4.27 | -- | 0.582 | -2.48 | -- | -- | 0.899 | 1.93 | 48.58 | 4423 | -- | -- |
| 485.25 | 1.03 | 4.24 | 0.577 | -- | -- | -- | -- | 1.02 | -- | -- | -- | -- | -- |
| 472.35 | 1.02 | 4.26 | -- | 0.597 | -- | -- | -- | 0.95 | 1.76 | -- | -- | -- | -- |
| 405.21 | 0.938 | 4.24 | -- | -- | -2.33 | -- | -- | 0.983 | -- | 47 | 4782 | -- | -- |
| 494.02 | 1.04 | 4.25 | -- | -- | -- | -- | -- | 0.961 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 363.94 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 9 | 4 |
| 11 | 369.05 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 17 | 370.01 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 8 | 8 |
| 57 | 373.73 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 99 | 375.26 | radiation | 10.0 | 14400 | < th | dose dependent | sin | 1 | NA |
| 110 | 376.00 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 7 | 13 |
| 112 | 376.01 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 7 | 20 |
| 113 | 376.02 | radiation | 10.0 | 14400 | > th | dose independent | sin | 5 | NA |
| 157 | 376.44 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 2 | 14 |
| 164 | 376.45 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 19 | 21 |
| 248 | 377.54 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 15 | 18 |
| 250 | 377.54 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 6 |
| 360 | 378.67 | radiation | 10.0 | 14400 | < th | dose dependent | no | NA | NA |
| 409 | 379.45 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 451 | 380.16 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 452 | 380.16 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 2 |
| 469 | 380.26 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 9 | 8 |
| 474 | 380.32 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 10 | 23 |
| 481 | 380.41 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 482 | 380.41 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 502 | 380.57 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 503 | 380.57 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 530 | 380.86 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 531 | 380.86 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 544 | 380.91 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 546 | 380.91 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 4 |
| 551 | 380.97 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 553 | 380.97 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 2 |
| 573 | 381.15 | radiation | 10.0 | 14400 | > th | dose independent | no | NA | NA |
| 753 | 381.71 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 760 | 381.72 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 4 |
| 852 | 381.95 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 24 | 6 |
| 853 | 381.96 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 874 | 382.29 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 881 | 382.45 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 9 |
| 901 | 382.60 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 9 | 14 |
| 902 | 382.60 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 9 | 16 |
| 950 | 382.89 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 991 | 383.17 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 21 | 8 |
| 993 | 383.17 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 21 | 8 |