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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0545400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plastocyanin-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.24 (0.0244) R2 : 0.00304
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0605 (0.0513) R2dN8 : 0.00392 R2N8 : 0.00304
σ : 0.459
deviance : 96.69
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
92.27 0.451 3.21 -0.0417 0.105 0.124 0.629 1.6 0.088 17.5 3 22 -- --
94.2 0.452 3.24 -0.0839 0.141 0.435 0.138 -- 0.0732 16.8 1.604 17 -- --
93.03 0.449 3.22 -0.0384 0.136 0.162 -- 1.42 0.0874 16.6 2.384 21 -- --
94.27 0.452 3.24 -0.0824 0.144 0.424 -- -- 0.0715 16.7 1.577 17 -- --
93.59 0.451 3.21 -0.00669 -- 0.0638 -- 1.46 0.0876 -- 2.9 21 -- --
96.2 0.46 3.24 -0.0258 0.0335 -- 0.354 -- 0.0567 20.4 -- -- -- --
96.53 0.46 3.24 -0.0353 0.0487 -- -- -- 0.0576 17.6 -- -- -- --
95.05 0.454 3.24 -0.067 -- 0.392 -- -- 0.0644 -- 1.188 17 -- --
94.44 0.453 3.24 -- 0.139 0.419 -- -- 0.0769 16.7 1.5 17 -- --
96.65 0.459 3.24 -0.0368 -- -- -- -- 0.0564 -- -- -- -- --
96.56 0.46 3.24 -- 0.0493 -- -- -- 0.0615 17.6 -- -- -- --
95.16 0.454 3.24 -- -- 0.372 -- -- 0.0699 -- 1.2 17 -- --
96.69 0.459 3.24 -- -- -- -- -- 0.0605 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 84.43 wind 5.0 30 < th dose dependent rect. 18 1
2 84.51 radiation 1.0 30 < th dose independent rect. 18 1
3 84.51 radiation 1.0 30 < th dose dependent rect. 18 1
7 84.57 wind 9.0 30 < th dose independent rect. 18 1
9 84.59 atmosphere 1005.0 30 > th dose independent rect. 18 1
10 84.60 wind 5.0 30 < th dose independent rect. 18 1
12 84.61 humidity 60.0 30 > th dose independent rect. 18 1
16 84.64 atmosphere 995.0 30 > th dose independent rect. 19 23
23 84.68 temperature 25.0 30 > th dose independent rect. 18 1
24 84.68 temperature 25.0 30 > th dose dependent rect. 18 1
25 84.70 wind 1.0 30 > th dose independent rect. 18 1
26 84.70 temperature 10.0 30 > th dose independent rect. 18 1
29 84.70 humidity 90.0 30 < th dose independent rect. 18 1
30 84.70 atmosphere 995.0 30 > th dose independent rect. 18 1
32 84.70 atmosphere 1010.0 30 < th dose independent rect. 18 1
38 84.70 precipitation 0.1 30 < th dose independent rect. 18 1
39 84.70 temperature 10.0 30 > th dose independent rect. 19 23
40 84.70 temperature 10.0 30 > th dose dependent rect. 18 1
43 84.70 atmosphere 995.0 30 > th dose dependent rect. 18 1
45 84.70 precipitation 0.1 30 < th dose dependent rect. 18 1
47 84.72 humidity 50.0 30 > th dose dependent rect. 18 1
50 84.76 atmosphere 1015.0 30 < th dose dependent rect. 18 1
57 84.83 humidity 70.0 30 > th dose dependent rect. 18 1
63 84.90 humidity 90.0 30 < th dose dependent rect. 18 1
68 84.94 temperature 10.0 1440 > th dose independent rect. 19 1
71 84.94 temperature 30.0 1440 < th dose independent rect. 19 1
75 84.94 humidity 50.0 1440 > th dose independent rect. 19 1
77 84.94 atmosphere 995.0 1440 > th dose independent rect. 19 1
81 84.94 radiation 1.0 1440 < th dose independent rect. 19 1
101 84.94 temperature 10.0 1440 > th dose independent rect. 20 23
105 84.94 radiation 1.0 1440 < th dose dependent rect. 19 1
113 84.95 radiation 40.0 43200 < th dose dependent rect. 19 1
124 84.99 temperature 30.0 30 < th dose independent rect. 18 1
129 85.01 precipitation 0.1 30 < th dose independent rect. 19 23
131 85.01 precipitation 0.1 30 < th dose dependent rect. 19 23
136 85.07 wind 1.0 30 > th dose dependent rect. 18 1
151 85.15 temperature 30.0 30 < th dose dependent rect. 18 1
177 86.64 humidity 50.0 10 > th dose independent rect. 19 23
182 86.85 wind 9.0 30 < th dose independent rect. 19 23
236 88.76 wind 1.0 30 > th dose independent rect. 19 23
241 88.95 atmosphere 1015.0 30 < th dose independent rect. 19 23
249 89.28 temperature 25.0 30 > th dose dependent rect. 18 8
264 89.69 temperature 10.0 30 > th dose dependent rect. 19 23
275 89.75 temperature 25.0 30 > th dose dependent rect. 18 12
293 89.97 temperature 25.0 30 > th dose dependent rect. 18 14
348 90.74 temperature 30.0 30 < th dose independent rect. 19 23
354 90.80 humidity 70.0 90 > th dose independent rect. 15 4
358 90.82 radiation 10.0 270 > th dose independent rect. 16 1
478 91.47 atmosphere 1010.0 30 < th dose independent rect. 8 10
497 91.57 wind 3.0 30 < th dose dependent rect. 15 22
533 91.67 wind 9.0 1440 < th dose independent rect. 19 1
537 91.69 humidity 60.0 90 > th dose dependent rect. 15 4
553 91.78 radiation 40.0 30 < th dose independent rect. 19 23
594 91.93 wind 3.0 720 < th dose dependent rect. 1 2
613 91.98 wind 3.0 30 < th dose dependent rect. 2 22
619 91.99 wind 1.0 30 > th dose dependent rect. 19 23
627 92.01 radiation 10.0 270 > th dose dependent rect. 16 1
690 92.05 wind 1.0 90 > th dose independent rect. 19 11
708 92.06 wind 3.0 720 < th dose dependent rect. 24 5
710 92.06 wind 3.0 10 < th dose dependent rect. 15 15
743 92.18 wind 3.0 30 < th dose dependent rect. 9 22
759 92.23 temperature 30.0 270 < th dose independent rect. 15 4
762 92.23 wind 3.0 30 < th dose dependent rect. 21 16
769 92.25 atmosphere 1010.0 90 < th dose independent rect. 19 20
772 92.25 wind 1.0 90 > th dose dependent rect. 19 11
795 92.28 humidity 60.0 10 > th dose dependent rect. 16 4
799 92.30 wind 9.0 720 < th dose independent rect. 7 12
824 92.35 radiation 20.0 720 < th dose independent rect. 23 8
850 92.39 humidity 70.0 10 > th dose independent rect. 15 5
851 92.39 humidity 50.0 720 > th dose independent rect. 7 12
879 92.42 temperature 25.0 30 > th dose independent rect. 16 10
884 92.43 temperature 10.0 30 > th dose dependent rect. 8 10
885 92.43 wind 3.0 30 < th dose dependent rect. 18 19
888 92.43 wind 3.0 30 < th dose dependent rect. 21 22
891 92.44 temperature 25.0 30 > th dose independent rect. 18 8
893 92.44 humidity 80.0 10 < th dose independent rect. 18 14
910 92.46 radiation 20.0 720 < th dose independent rect. 19 12
990 92.55 wind 1.0 30 > th dose independent rect. 19 16
991 92.55 wind 3.0 10 > th dose independent rect. 18 18
992 92.55 wind 3.0 30 < th dose dependent no NA NA