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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0138200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cupredoxin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.26 (0.0397) R2 : 0.00131
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0647 (0.0837) R2dN8 : 0.00169 R2N8 : 0.00131
σ : 0.749
deviance : 257.18
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
235.59 0.721 3.14 0.423 0.156 -0.717 0.411 2.17 0.303 8.72 25.3 1358 -- --
241.31 0.723 3.24 -0.172 0.223 -0.465 0.0539 -- 0.0874 8.52 23.6 1475 -- --
236.09 0.716 3.14 0.442 0.157 -0.708 -- 2.2 0.306 9.56 25.3 1357 -- --
239.61 0.721 3.22 -0.238 0.184 -0.489 -- -- 0.0931 10.5 23 1405 -- --
237.15 0.717 3.14 0.469 -- -0.766 -- 2.45 0.322 -- 25.52 1300 -- --
250.27 0.742 3.26 -0.414 0.195 -- 0.116 -- -0.11 10.9 -- -- -- --
250.32 0.741 3.26 -0.409 0.194 -- -- -- -0.109 11.2 -- -- -- --
240.69 0.723 3.22 -0.222 -- -0.487 -- -- 0.11 -- 23.2 828 -- --
240.76 0.723 3.2 -- 0.192 -0.536 -- -- 0.128 10.3 23.1 1427 -- --
252.67 0.743 3.27 -0.414 -- -- -- -- -0.111 -- -- -- -- --
254.73 0.747 3.25 -- 0.198 -- -- -- -0.0633 11.3 -- -- -- --
242 0.725 3.22 -- -- -0.504 -- -- 0.129 -- 23.3 839 -- --
257.18 0.749 3.26 -- -- -- -- -- -0.0647 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 232.94 radiation 1 720 < th dose dependent rect. 5 23
2 233.29 wind 7 30 > th dose independent rect. 12 17
6 233.40 wind 7 30 > th dose independent rect. 12 10
16 233.91 radiation 1 720 < th dose dependent rect. 24 18
17 233.91 temperature 10 30 > th dose dependent rect. 4 23
49 234.75 radiation 20 14400 < th dose independent rect. 17 9
52 234.78 wind 7 30 > th dose independent sin 16 NA
53 234.78 radiation 40 14400 < th dose dependent rect. 3 2
56 234.84 radiation 1 720 > th dose independent rect. 17 23
58 234.88 temperature 25 1440 > th dose independent rect. 9 12
62 234.96 radiation 20 14400 < th dose independent rect. 17 13
67 235.03 radiation 1 720 < th dose dependent rect. 5 15
69 235.05 radiation 20 14400 < th dose independent rect. 17 2
70 235.05 temperature 25 1440 < th dose independent rect. 8 13
72 235.08 radiation 20 14400 < th dose independent rect. 17 4
74 235.10 radiation 20 14400 < th dose independent rect. 17 6
94 235.25 temperature 25 1440 < th dose independent rect. 14 7
98 235.27 temperature 25 1440 > th dose independent sin 21 NA
100 235.27 radiation 1 720 < th dose independent rect. 5 23
101 235.29 radiation 40 43200 > th dose independent rect. 15 18
103 235.31 radiation 40 43200 < th dose independent rect. 8 1
107 235.34 temperature 25 1440 > th dose independent rect. 13 8
108 235.35 radiation 30 43200 > th dose dependent rect. 8 1
132 235.39 temperature 25 1440 > th dose independent rect. 14 6
136 235.40 radiation 40 43200 > th dose independent rect. 7 2
178 235.47 wind 7 30 < th dose independent sin 16 NA
200 235.50 temperature 25 1440 < th dose independent sin 20 NA
203 235.50 radiation 40 43200 < th dose independent rect. 5 4
204 235.50 radiation 40 43200 < th dose independent rect. 24 9
205 235.50 radiation 40 43200 < th dose independent rect. 22 11
206 235.50 radiation 40 43200 < th dose independent rect. 20 13
207 235.50 radiation 40 43200 < th dose independent rect. 18 15
208 235.50 wind 7 90 > th dose dependent rect. 12 3
224 235.52 temperature 30 90 < th dose dependent rect. 10 20
226 235.55 atmosphere 1015 4320 > th dose dependent rect. 6 1
240 235.61 temperature 30 270 < th dose dependent rect. 8 20
258 235.68 atmosphere 1015 4320 > th dose dependent rect. 2 6
284 235.76 radiation 10 14400 > th dose dependent rect. 17 1
303 235.78 temperature 20 4320 > th dose independent rect. 4 1
307 235.79 temperature 20 4320 < th dose independent rect. 4 1
318 235.80 radiation 20 43200 < th dose dependent rect. 18 13
350 235.88 temperature 30 10 < th dose dependent rect. 11 20
354 235.89 radiation 10 43200 < th dose dependent rect. 24 7
366 235.90 temperature 15 270 > th dose dependent rect. 4 20
386 235.96 radiation 10 43200 < th dose dependent sin 11 NA
394 235.98 temperature 25 1440 > th dose independent rect. 10 1
428 236.02 radiation 1 720 < th dose independent rect. 24 18
453 236.07 radiation 1 720 < th dose dependent rect. 24 23
468 236.10 humidity 60 14400 < th dose dependent rect. 16 1
470 236.10 radiation 40 14400 < th dose dependent rect. 22 7
490 236.13 atmosphere 1015 4320 > th dose independent rect. 6 1
511 236.14 atmosphere 1015 4320 < th dose independent rect. 7 1
517 236.15 radiation 1 4320 < th dose dependent rect. 3 2
540 236.18 wind 7 10 > th dose independent rect. 12 5
545 236.18 wind 7 30 < th dose independent rect. 4 23
552 236.19 wind 7 90 > th dose independent rect. 12 3
588 236.22 radiation 1 720 > th dose independent rect. 12 18
590 236.23 radiation 1 43200 < th dose independent rect. 3 2
638 236.26 radiation 1 720 < th dose dependent rect. 8 23
639 236.27 radiation 1 43200 < th dose independent rect. 22 7
690 236.31 temperature 25 270 < th dose independent rect. 8 20
716 236.33 humidity 60 14400 < th dose independent rect. 17 1
726 236.34 radiation 1 720 < th dose dependent rect. 17 23
731 236.35 radiation 1 720 < th dose dependent sin 2 NA
736 236.36 atmosphere 1015 4320 > th dose independent rect. 3 5
782 236.40 radiation 1 90 < th dose dependent rect. 15 1
783 236.40 radiation 1 43200 > th dose dependent rect. 16 16
785 236.41 atmosphere 1015 4320 > th dose independent rect. 2 9
795 236.43 humidity 60 14400 < th dose independent rect. 16 3
806 236.44 radiation 1 43200 > th dose independent rect. 4 1
820 236.44 wind 7 10 > th dose independent rect. 19 22
823 236.44 radiation 1 43200 > th dose dependent rect. 4 1
840 236.45 humidity 60 14400 < th dose independent rect. 16 5
865 236.45 radiation 10 43200 < th dose dependent rect. 13 18
877 236.47 atmosphere 1015 4320 < th dose independent rect. 2 9
889 236.48 radiation 1 720 < th dose dependent rect. 13 18
962 236.54 radiation 1 1440 < th dose dependent rect. 11 19
994 236.57 humidity 60 14400 > th dose independent rect. 17 1