Os09g0572700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cupredoxin domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os09g0572700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Cupredoxin domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135.61 | 0.547 | 8.7 | 1.94 | 0.935 | 1.14 | 0.696 | 4.12 | 0.347 | 6.54 | 5.2 | 564 | -- | -- |
| 147.68 | 0.566 | 8.63 | 1.83 | 0.871 | 0.674 | 0.158 | -- | 0.449 | 6.4 | 5.492 | 542 | -- | -- |
| 136.45 | 0.544 | 8.71 | 2 | 0.804 | 1.27 | -- | 4.42 | 0.34 | 6.93 | 5.578 | 969 | -- | -- |
| 147.15 | 0.565 | 8.63 | 1.88 | 0.904 | 0.657 | -- | -- | 0.41 | 6.41 | 5.2 | 542 | -- | -- |
| 164.33 | 0.597 | 8.73 | 2.01 | -- | 1.23 | -- | 5.2 | 0.343 | -- | 5.5 | 1081 | -- | -- |
| 152.3 | 0.579 | 8.64 | 1.7 | 0.737 | -- | 0.453 | -- | 0.393 | 5.91 | -- | -- | -- | -- |
| 152.79 | 0.579 | 8.64 | 1.7 | 0.74 | -- | -- | -- | 0.392 | 6 | -- | -- | -- | -- |
| 176.9 | 0.622 | 8.65 | 1.64 | -- | -0.284 | -- | -- | 0.401 | -- | 4.798 | 1362 | -- | -- |
| 222.67 | 0.699 | 8.69 | -- | 0.722 | -1.1 | -- | -- | 0.175 | 6.12 | 7.7 | 1156 | -- | -- |
| 181.19 | 0.629 | 8.65 | 1.72 | -- | -- | -- | -- | 0.409 | -- | -- | -- | -- | -- |
| 228.96 | 0.708 | 8.68 | -- | 0.766 | -- | -- | -- | 0.203 | 5.89 | -- | -- | -- | -- |
| 196.94 | 0.654 | 8.74 | -- | -- | -1.34 | -- | -- | -0.0556 | -- | 6.7 | 43756 | -- | -- |
| 259.37 | 0.752 | 8.69 | -- | -- | -- | -- | -- | 0.218 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 129.79 | wind | 5 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 5 | 131.81 | wind | 5 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 7 | 132.21 | wind | 5 | 1440 | > th | dose dependent | rect. | 1 | 9 |
| 21 | 132.77 | wind | 5 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 45 | 133.57 | wind | 5 | 1440 | > th | dose dependent | sin | 6 | NA |
| 64 | 134.25 | wind | 5 | 720 | < th | dose independent | rect. | 7 | 12 |
| 71 | 134.37 | wind | 5 | 720 | < th | dose independent | rect. | 21 | 22 |
| 73 | 134.37 | wind | 5 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 75 | 134.39 | wind | 5 | 1440 | > th | dose dependent | rect. | 24 | 13 |
| 81 | 134.50 | wind | 7 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 90 | 134.59 | wind | 5 | 720 | > th | dose dependent | rect. | 15 | 21 |
| 102 | 134.75 | wind | 7 | 1440 | < th | dose independent | rect. | 3 | 7 |
| 114 | 134.92 | wind | 7 | 1440 | < th | dose independent | rect. | 1 | 9 |
| 117 | 134.97 | wind | 5 | 720 | < th | dose independent | rect. | 15 | 20 |
| 124 | 135.08 | wind | 7 | 1440 | > th | dose independent | rect. | 23 | 11 |
| 127 | 135.16 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 22 |
| 162 | 135.59 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 14 |
| 177 | 135.70 | wind | 5 | 720 | > th | dose independent | rect. | 15 | 22 |
| 178 | 135.71 | wind | 7 | 1440 | > th | dose independent | sin | 7 | NA |
| 180 | 135.72 | wind | 5 | 720 | > th | dose independent | rect. | 20 | 22 |
| 197 | 135.85 | wind | 5 | 720 | > th | dose independent | rect. | 17 | 23 |
| 206 | 135.92 | wind | 7 | 1440 | > th | dose independent | rect. | 21 | 16 |
| 210 | 135.95 | wind | 7 | 1440 | < th | dose independent | rect. | 24 | 11 |
| 214 | 135.96 | wind | 7 | 1440 | < th | dose independent | sin | 7 | NA |
| 250 | 136.18 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 21 |
| 256 | 136.21 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 13 |
| 266 | 136.24 | wind | 5 | 1440 | > th | dose independent | sin | 5 | NA |
| 289 | 136.33 | temperature | 15 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 290 | 136.33 | wind | 7 | 1440 | < th | dose independent | rect. | 21 | 16 |
| 332 | 136.46 | wind | 5 | 720 | > th | dose independent | rect. | 3 | 23 |
| 340 | 136.49 | wind | 5 | 720 | > th | dose independent | no | NA | NA |
| 347 | 136.50 | wind | 5 | 720 | < th | dose independent | rect. | 6 | 23 |
| 351 | 136.51 | wind | 5 | 720 | < th | dose independent | no | NA | NA |
| 363 | 136.53 | wind | 5 | 720 | > th | dose independent | rect. | 7 | 23 |
| 371 | 136.55 | temperature | 20 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 373 | 136.56 | wind | 7 | 720 | > th | dose independent | rect. | 17 | 20 |
| 377 | 136.57 | radiation | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 422 | 136.65 | temperature | 25 | 720 | < th | dose dependent | sin | 22 | NA |
| 430 | 136.67 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 460 | 136.74 | temperature | 20 | 270 | < th | dose dependent | sin | 20 | NA |
| 487 | 136.84 | temperature | 20 | 270 | < th | dose independent | rect. | 8 | 20 |
| 493 | 136.85 | wind | 5 | 720 | < th | dose independent | rect. | 3 | 23 |
| 588 | 137.07 | temperature | 15 | 720 | > th | dose independent | rect. | 19 | 18 |
| 619 | 137.18 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 7 | 8 |
| 631 | 137.20 | temperature | 10 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 638 | 137.22 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 19 |
| 641 | 137.23 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 12 |
| 646 | 137.24 | temperature | 15 | 720 | > th | dose independent | rect. | 19 | 12 |
| 665 | 137.27 | temperature | 20 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 698 | 137.33 | temperature | 15 | 720 | > th | dose independent | rect. | 9 | 22 |
| 758 | 137.42 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 830 | 137.51 | wind | 5 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 845 | 137.53 | wind | 5 | 720 | > th | dose dependent | no | NA | NA |
| 852 | 137.54 | wind | 5 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 855 | 137.54 | wind | 5 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 858 | 137.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 864 | 137.55 | wind | 5 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 923 | 137.60 | temperature | 20 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 953 | 137.63 | temperature | 10 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 996 | 137.69 | wind | 9 | 720 | < th | dose dependent | rect. | 7 | 12 |