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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0138400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plastocyanin-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0253) R2 : 0.00512
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0817 (0.0533) R2dN8 : 0.00661 R2N8 : 0.00512
σ : 0.477
deviance : 104.38
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
97.72 0.464 2.92 0.0667 0.152 0.692 0.0302 -2.13 0.105 9.36 1012 15 -- --
100.39 0.47 2.92 0.0268 0.158 0.774 0.19 -- 0.0977 9.99 1012 21 -- --
97.72 0.46 2.92 0.0677 0.152 0.689 -- -2.13 0.105 9.25 1012 13 -- --
100.5 0.47 2.92 0.0329 0.16 0.762 -- -- 0.0972 9.42 1012 21 -- --
99.06 0.466 2.92 0.0672 -- 0.64 -- -2.19 0.106 -- 1012 15 -- --
103.12 0.476 2.93 0.00831 0.144 -- 0.119 -- 0.0824 9.56 -- -- -- --
103.16 0.476 2.93 0.0121 0.145 -- -- -- 0.0822 9.13 -- -- -- --
102 0.472 2.93 0.0316 -- 0.716 -- -- 0.0973 -- 1012 21 -- --
100.53 0.47 2.93 -- 0.16 0.76 -- -- 0.0932 9.4 1012 21 -- --
104.38 0.477 2.93 0.0117 -- -- -- -- 0.083 -- -- -- -- --
103.16 0.475 2.93 -- 0.145 -- -- -- 0.0808 9.13 -- -- -- --
102.02 0.472 2.93 -- -- 0.711 -- -- 0.0937 -- 1012 21 -- --
104.38 0.477 2.93 -- -- -- -- -- 0.0817 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 93.22 radiation 10.0 270 < th dose dependent rect. 8 7
4 93.88 radiation 10.0 270 < th dose independent rect. 8 7
6 94.04 radiation 10.0 270 < th dose dependent rect. 9 4
12 94.27 humidity 90.0 90 > th dose independent rect. 14 1
15 94.27 humidity 90.0 90 > th dose dependent rect. 14 1
20 94.44 wind 3.0 30 < th dose dependent rect. 6 1
22 94.48 atmosphere 1005.0 30 > th dose dependent rect. 6 1
25 94.68 wind 9.0 30 < th dose independent rect. 7 23
28 94.80 radiation 10.0 270 < th dose independent rect. 11 4
30 94.88 radiation 10.0 10 > th dose independent rect. 6 1
56 94.88 radiation 10.0 10 > th dose dependent rect. 6 1
83 94.99 radiation 20.0 270 < th dose dependent rect. 11 2
84 94.99 temperature 25.0 90 < th dose dependent rect. 10 6
85 95.04 humidity 80.0 30 > th dose dependent rect. 6 1
96 95.21 temperature 30.0 30 < th dose dependent rect. 6 1
108 95.43 wind 3.0 30 < th dose independent rect. 6 1
117 95.52 atmosphere 1015.0 30 < th dose independent rect. 7 23
139 95.71 atmosphere 1005.0 30 > th dose independent rect. 6 1
141 95.72 humidity 80.0 30 > th dose independent rect. 6 1
144 95.73 wind 1.0 30 < th dose dependent rect. 15 7
148 95.75 temperature 25.0 10 > th dose independent rect. 6 1
150 95.76 wind 1.0 30 > th dose independent rect. 6 1
154 95.76 temperature 10.0 30 > th dose independent rect. 6 1
156 95.76 temperature 30.0 30 < th dose independent rect. 6 1
157 95.76 humidity 50.0 30 > th dose independent rect. 6 1
161 95.76 atmosphere 1015.0 30 < th dose independent rect. 6 1
162 95.76 radiation 20.0 30 < th dose independent rect. 6 1
165 95.76 precipitation 0.1 30 < th dose independent rect. 6 1
166 95.76 temperature 10.0 30 > th dose independent rect. 7 23
167 95.76 precipitation 0.1 30 < th dose dependent rect. 6 1
170 95.79 humidity 90.0 30 < th dose independent rect. 6 1
172 95.80 wind 9.0 1440 < th dose independent rect. 7 1
173 95.80 temperature 10.0 1440 > th dose independent rect. 7 1
177 95.80 temperature 30.0 1440 < th dose independent rect. 7 1
181 95.80 humidity 50.0 1440 > th dose independent rect. 7 1
186 95.80 atmosphere 995.0 1440 > th dose independent rect. 7 1
187 95.80 atmosphere 1015.0 1440 < th dose independent rect. 7 1
188 95.80 temperature 10.0 1440 > th dose independent rect. 8 23
192 95.83 atmosphere 1010.0 1440 < th dose independent rect. 17 1
200 95.92 wind 1.0 30 < th dose independent rect. 15 7
215 96.02 temperature 10.0 30 > th dose dependent rect. 6 1
218 96.07 radiation 40.0 30 < th dose dependent rect. 6 1
231 96.14 radiation 10.0 270 < th dose independent rect. 19 21
239 96.20 radiation 10.0 1440 > th dose independent rect. 16 15
244 96.24 radiation 20.0 270 < th dose dependent rect. 19 21
265 96.27 temperature 25.0 30 < th dose independent rect. 11 6
280 96.37 radiation 1.0 4320 < th dose independent rect. 2 4
290 96.40 wind 1.0 30 < th dose dependent rect. 15 3
294 96.41 wind 1.0 30 < th dose independent rect. 15 3
303 96.42 radiation 1.0 4320 < th dose independent rect. 22 8
305 96.43 radiation 1.0 4320 > th dose independent rect. 4 2
321 96.43 radiation 1.0 4320 < th dose independent rect. 19 11
324 96.46 radiation 10.0 1440 > th dose independent rect. 16 2
339 96.52 temperature 25.0 270 < th dose independent rect. 11 2
347 96.56 radiation 10.0 270 < th dose independent rect. 8 21
362 96.65 radiation 10.0 270 < th dose independent rect. 8 19
364 96.66 wind 1.0 30 < th dose independent rect. 15 1
370 96.66 wind 1.0 30 < th dose dependent rect. 15 1
406 96.83 radiation 10.0 10 < th dose independent rect. 10 6
410 96.85 humidity 90.0 270 > th dose independent rect. 9 8
421 96.89 radiation 20.0 270 < th dose independent rect. 10 17
423 96.90 radiation 20.0 270 < th dose dependent rect. 8 21
424 96.91 atmosphere 1010.0 1440 < th dose independent rect. 16 5
429 96.94 temperature 30.0 270 < th dose dependent rect. 11 2
435 96.99 atmosphere 1010.0 1440 > th dose independent rect. 17 1
449 97.05 humidity 80.0 90 > th dose dependent rect. 10 7
461 97.11 atmosphere 1015.0 30 < th dose dependent rect. 6 1
462 97.11 temperature 25.0 10 < th dose dependent rect. 11 3
476 97.19 radiation 20.0 270 < th dose dependent rect. 9 18
491 97.23 precipitation 0.1 720 > th dose independent rect. 8 1
493 97.23 precipitation 0.1 720 > th dose dependent rect. 8 1
501 97.25 precipitation 0.1 90 > th dose independent rect. 14 1
505 97.25 precipitation 0.1 90 > th dose dependent rect. 14 1
528 97.29 humidity 90.0 270 > th dose independent rect. 10 1
544 97.30 atmosphere 1010.0 1440 < th dose independent rect. 19 2
546 97.30 humidity 90.0 10 < th dose dependent rect. 6 1
559 97.32 humidity 90.0 270 > th dose dependent rect. 10 1
611 97.44 atmosphere 1010.0 1440 > th dose independent rect. 16 5
614 97.44 radiation 20.0 10 < th dose dependent rect. 11 5
668 97.52 atmosphere 1010.0 1440 > th dose independent rect. 20 1
693 97.55 radiation 10.0 1440 > th dose dependent rect. 15 16
700 97.56 radiation 40.0 1440 > th dose dependent rect. 12 1
712 97.60 atmosphere 1010.0 1440 < th dose independent rect. 12 10
716 97.61 humidity 60.0 4320 < th dose independent rect. 10 1
717 97.61 atmosphere 1010.0 14400 > th dose independent rect. 20 1
721 97.62 atmosphere 1010.0 14400 < th dose independent rect. 20 1
722 97.62 wind 1.0 90 < th dose dependent rect. 11 1
754 97.69 atmosphere 1010.0 10 < th dose independent sin 9 NA
765 97.71 radiation 20.0 4320 > th dose independent sin 11 NA
804 97.74 wind 1.0 10 < th dose dependent rect. 11 1
810 97.75 atmosphere 995.0 30 > th dose independent rect. 7 23
813 97.75 radiation 10.0 1440 > th dose dependent rect. 15 2
849 97.79 atmosphere 1010.0 14400 < th dose independent rect. 10 1
852 97.79 atmosphere 1005.0 10 > th dose dependent sin 7 NA
873 97.82 temperature 25.0 90 < th dose independent rect. 10 19
884 97.83 radiation 40.0 4320 > th dose independent rect. 14 20
886 97.84 humidity 60.0 4320 < th dose independent rect. 8 3
904 97.85 atmosphere 1010.0 14400 > th dose independent rect. 1 1
905 97.85 atmosphere 1010.0 14400 > th dose independent rect. 10 1
924 97.87 temperature 25.0 30 < th dose independent rect. 11 15
935 97.88 atmosphere 1005.0 90 > th dose dependent rect. 23 10
946 97.90 atmosphere 1010.0 270 > th dose independent rect. 12 1
965 97.91 atmosphere 1015.0 720 < th dose independent rect. 7 16
981 97.93 atmosphere 1010.0 14400 < th dose independent rect. 13 1
987 97.93 atmosphere 1010.0 14400 > th dose independent rect. 18 8