Os04g0629200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cupredoxin domain containing protein.
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Os04g0629200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cupredoxin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 104.67 | 0.481 | 2.73 | 0.155 | 0.104 | 3.06 | 0.138 | 5.59 | -0.0364 | 12.1 | 17.49 | 775 | -- | -- |
| 112.8 | 0.495 | 2.67 | 0.18 | 0.167 | 0.766 | 0.196 | -- | -0.0152 | 10.4 | 18.04 | 719 | -- | -- |
| 103.63 | 0.474 | 2.73 | 0.197 | 0.11 | 3.64 | -- | 6.43 | -0.038 | 13 | 16.9 | 602 | -- | -- |
| 112.98 | 0.495 | 2.69 | 0.201 | 0.147 | 0.766 | -- | -- | -0.0292 | 12.2 | 18 | 647 | -- | -- |
| 104.38 | 0.476 | 2.73 | 0.176 | -- | 3.74 | -- | 6.83 | -0.0434 | -- | 16.98 | 639 | -- | -- |
| 115.31 | 0.503 | 2.7 | 0.0851 | 0.18 | -- | 0.429 | -- | -0.0644 | 12.3 | -- | -- | -- | -- |
| 116.1 | 0.505 | 2.7 | 0.102 | 0.178 | -- | -- | -- | -0.0625 | 12.1 | -- | -- | -- | -- |
| 114.28 | 0.498 | 2.69 | 0.215 | -- | 0.814 | -- | -- | -0.0236 | -- | 18.36 | 680 | -- | -- |
| 113.93 | 0.497 | 2.69 | -- | 0.151 | 0.665 | -- | -- | -0.056 | 12.1 | 17.73 | 637 | -- | -- |
| 118.1 | 0.508 | 2.7 | 0.0959 | -- | -- | -- | -- | -0.0651 | -- | -- | -- | -- | -- |
| 116.38 | 0.505 | 2.7 | -- | 0.177 | -- | -- | -- | -0.0738 | 12.1 | -- | -- | -- | -- |
| 115.32 | 0.5 | 2.7 | -- | -- | 0.715 | -- | -- | -0.0542 | -- | 18 | 654 | -- | -- |
| 118.35 | 0.508 | 2.7 | -- | -- | -- | -- | -- | -0.0758 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 103.19 | wind | 1.0 | 10 | < th | dose independent | rect. | 22 | 1 |
| 3 | 103.19 | wind | 1.0 | 10 | < th | dose dependent | rect. | 22 | 1 |
| 5 | 103.60 | wind | 9.0 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 13 | 103.60 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 38 | 103.60 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 71 | 103.69 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 74 | 103.83 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 75 | 103.93 | wind | 1.0 | 10 | < th | dose dependent | rect. | 15 | 8 |
| 87 | 104.29 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 12 | 6 |
| 88 | 104.30 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 12 | 6 |
| 89 | 104.32 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 90 | 104.38 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 92 | 104.59 | wind | 1.0 | 270 | < th | dose dependent | rect. | 7 | 1 |
| 96 | 104.64 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 102 | 104.71 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 106 | 104.77 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 110 | 104.83 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 111 | 104.90 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 113 | 105.02 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 7 | 5 |
| 124 | 105.28 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 131 | 105.34 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 12 | 9 |
| 135 | 105.55 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 7 | 1 |
| 169 | 105.99 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 11 | 1 |
| 191 | 106.24 | wind | 7.0 | 4320 | < th | dose independent | rect. | 5 | 4 |
| 194 | 106.29 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 7 | 15 |
| 238 | 106.65 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 22 | 12 |
| 240 | 106.66 | wind | 1.0 | 720 | < th | dose independent | rect. | 7 | 1 |
| 257 | 106.81 | wind | 7.0 | 4320 | > th | dose independent | rect. | 23 | 10 |
| 265 | 106.88 | wind | 7.0 | 4320 | < th | dose independent | rect. | 23 | 10 |
| 321 | 107.10 | wind | 7.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 331 | 107.14 | wind | 7.0 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 433 | 107.35 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 457 | 107.39 | wind | 1.0 | 720 | < th | dose dependent | rect. | 7 | 9 |
| 497 | 107.47 | temperature | 20.0 | 1440 | < th | dose dependent | sin | 20 | NA |
| 503 | 107.48 | wind | 1.0 | 10 | < th | dose independent | rect. | 15 | 8 |
| 516 | 107.52 | wind | 1.0 | 10 | < th | dose independent | rect. | 17 | 6 |
| 546 | 107.57 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 637 | 107.77 | atmosphere | 1005.0 | 30 | < th | dose independent | rect. | 8 | 5 |
| 685 | 107.85 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 13 | 8 |
| 761 | 107.98 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 13 | 6 |
| 850 | 108.14 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 855 | 108.14 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 11 | 1 |
| 859 | 108.15 | wind | 1.0 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 913 | 108.24 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 916 | 108.24 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 964 | 108.33 | wind | 1.0 | 720 | < th | dose independent | rect. | 6 | 10 |
| 977 | 108.35 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 3 | 9 |
| 985 | 108.38 | wind | 1.0 | 1440 | < th | dose independent | rect. | 20 | 1 |