BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0660300 Os11g0660300|AK109657
(323 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0660300 WD40-like domain containing protein 564 e-161
Os01g0780400 WD40-like domain containing protein 81 1e-15
Os06g0653800 Similar to WD-repeat protein 57 (Prp8-binding ... 79 6e-15
Os03g0685600 WD40-like domain containing protein 77 1e-14
Os10g0104500 Similar to Notchless-related 77 2e-14
Os11g0594200 Similar to Notchless gene homolog 76 3e-14
Os03g0355200 WD40-like domain containing protein 75 8e-14
Os03g0725400 Similar to WD-repeat protein 5 (BMP2-induced 3... 74 1e-13
Os07g0205200 Similar to Transcription initiation factor TFI... 74 2e-13
Os05g0552300 Similar to Guanine nucleotide-binding protein ... 73 2e-13
Os03g0339100 Similar to PRL1 protein 73 3e-13
Os06g0649500 WD40-like domain containing protein 70 3e-12
Os05g0407200 WD40-like domain containing protein 70 3e-12
AK110077 70 3e-12
Os04g0592700 Quinonprotein alcohol dehydrogenase-like domai... 70 3e-12
Os06g0143900 Similar to Coatomer protein complex, beta prime 69 4e-12
AK111235 68 8e-12
Os10g0494800 Similar to Katanin p80 WD40-containing subunit... 67 1e-11
Os07g0252000 WD40-like domain containing protein 67 2e-11
Os01g0322800 WD40-like domain containing protein 66 4e-11
AK110120 65 8e-11
AK110547 65 8e-11
>Os11g0660300 WD40-like domain containing protein
Length = 323
Score = 564 bits (1453), Expect = e-161, Method: Compositional matrix adjust.
Identities = 286/323 (88%), Positives = 286/323 (88%)
Query: 1 MKLAGLKSVDGAHEESIWAAAWVPAADHRPAALLLTGALDETVRLWXXXXXXXXXXXXXR 60
MKLAGLKSVDGAHEESIWAAAWVPAADHRPAALLLTGALDETVRLW R
Sbjct: 1 MKLAGLKSVDGAHEESIWAAAWVPAADHRPAALLLTGALDETVRLWAPDDLASAAASPSR 60
Query: 61 GHALGVVSLXXXXXXXXXXXVSLDSYVRVFDVDSGSSVATLEAPPSEVWGIQFHPKXXXX 120
GHALGVVSL VSLDSYVRVFDVDSGSSVATLEAPPSEVWGIQFHPK
Sbjct: 61 GHALGVVSLAAHPAGAVAAAVSLDSYVRVFDVDSGSSVATLEAPPSEVWGIQFHPKGSAL 120
Query: 121 XXXXXXXXXVKLWDTEKWKPITSLAVPRPEGARPDKTGSGKFVLSVAWSPDGKLLACGSM 180
VKLWDTEKWKPITSLAVPRPEGARPDKTGSGKFVLSVAWSPDGKLLACGSM
Sbjct: 121 AAAGGGSGSVKLWDTEKWKPITSLAVPRPEGARPDKTGSGKFVLSVAWSPDGKLLACGSM 180
Query: 181 DGTIAVYDAVRMKFLHHLEGHHMPVRSMVFSPVDPHVLFTASDDCHIHIYDAKEKSLIGA 240
DGTIAVYDAVRMKFLHHLEGHHMPVRSMVFSPVDPHVLFTASDDCHIHIYDAKEKSLIGA
Sbjct: 181 DGTIAVYDAVRMKFLHHLEGHHMPVRSMVFSPVDPHVLFTASDDCHIHIYDAKEKSLIGA 240
Query: 241 MSGHASWVLSIDVSPDGMAVATGSSDRTVRLWDINTRASVQTMSNHNDQVWAVAFRPPGG 300
MSGHASWVLSIDVSPDGMAVATGSSDRTVRLWDINTRASVQTMSNHNDQVWAVAFRPPGG
Sbjct: 241 MSGHASWVLSIDVSPDGMAVATGSSDRTVRLWDINTRASVQTMSNHNDQVWAVAFRPPGG 300
Query: 301 TGVRAGRLASVSDDKSITLYDYS 323
TGVRAGRLASVSDDKSITLYDYS
Sbjct: 301 TGVRAGRLASVSDDKSITLYDYS 323
>Os01g0780400 WD40-like domain containing protein
Length = 838
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 13/172 (7%)
Query: 130 VKLWDTEKWKPITSLAVPRPEGARPDKTGSGKFVLSVAWSPDGKLLACGSMDGTIAVYDA 189
+KLWD E+ K + SL TG SV + P G+ A GS D + ++D
Sbjct: 84 IKLWDLEEAKVVRSL------------TGHRSSCTSVEFHPFGEFFASGSSDTDLKIWDI 131
Query: 190 VRMKFLHHLEGHHMPVRSMVFSPVDPHVLFTASDDCHIHIYDAKEKSLIGAMSGHASWVL 249
+ +H +GH +R++ F+P D + T +D + ++D L+ H+ +
Sbjct: 132 KKKGCIHTYKGHRGAIRTIRFTP-DGRWVVTGGEDNIVKVWDLTAGKLLHDFKFHSGQIR 190
Query: 250 SIDVSPDGMAVATGSSDRTVRLWDINTRASVQTMSNHNDQVWAVAFRPPGGT 301
ID P +ATGS+DRTV+ WD+ T + + V + F P G T
Sbjct: 191 CIDFHPQEFLLATGSADRTVKFWDLETFELIGSAGPEATGVRSTVFHPDGKT 242
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 85/192 (44%), Gaps = 19/192 (9%)
Query: 130 VKLWDTEKWKPITSLAVPRPEGARPDKTGSGKFVLSVAWSPDGKLLACGSMDGTIAVYDA 189
V LW K P+ SL+ TGS V +V + L+ GS +G+I ++D
Sbjct: 42 VNLWAIGKQTPLLSLS---------GHTGS---VEAVEFDTAEVLVLAGSSNGSIKLWDL 89
Query: 190 VRMKFLHHLEGHHMPVRSMVFSPVDPHVLFTASDDCHIHIYDAKEKSLIGAMSGHASWVL 249
K + L GH S+ F P + S D + I+D K+K I GH +
Sbjct: 90 EEAKVVRSLTGHRSSCTSVEFHPFG-EFFASGSSDTDLKIWDIKKKGCIHTYKGHRGAIR 148
Query: 250 SIDVSPDGMAVATGSSDRTVRLWDINTRASVQTMSNHNDQVWAVAFRPPGGTGVRAGRLA 309
+I +PDG V TG D V++WD+ + H+ Q+ + F P + LA
Sbjct: 149 TIRFTPDGRWVVTGGEDNIVKVWDLTAGKLLHDFKFHSGQIRCIDFHP------QEFLLA 202
Query: 310 SVSDDKSITLYD 321
+ S D+++ +D
Sbjct: 203 TGSADRTVKFWD 214
>Os06g0653800 Similar to WD-repeat protein 57 (Prp8-binding protein) (hPRP8BP)
(U5 snRNP- specific 40 kDa protein) (38 kDa splicing
factor)
Length = 343
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 116/294 (39%), Gaps = 28/294 (9%)
Query: 12 AHEESIWAAAWVPAADHRPAALLLTGALDETVRLWXXXXXXXXXXXXXRGHALGVVSLXX 71
H+ +++ + PA ++ +G+ D+ + LW RGH V+ L
Sbjct: 51 GHQSAVYCMKFNPAG-----TVIASGSHDKDIFLWYVHGDCKNYMVL-RGHKNAVLDLQW 104
Query: 72 XXXXXXXXXVSLDSYVRVFDVDSGSSVATLEAPPSEVWGIQFHPKXXXXXXXXXXXXXVK 131
S D VRV+DV++G V + S V K K
Sbjct: 105 TTDGTQIISASPDKTVRVWDVETGKQVKKMAEHSSFVNSCCPARKWPPLVVSGSDDGTAK 164
Query: 132 LWDTEKWKPITSLAVPRPEGARPDKTGSGKFVLSVAWSPDGKLLACGSMDGTIAVYDAVR 191
LWD + I +L PDK + +V++S + G +D + +D +
Sbjct: 165 LWDLRQRGAIQTL---------PDKYQ----ITAVSFSEAADKVFTGGLDNDVKWWDLRK 211
Query: 192 MKFLHHLEGHHMPVRSMVFSPVDPHVLFTASDDCHIHIYD----AKEKSLIGAMSGHA-- 245
+ +L+GH + M SP D L T + D + I+D A E I ++GH
Sbjct: 212 NEVTEYLKGHQDMITGMQLSP-DGSYLLTNAMDNELKIWDLRPYAPENRNIKTLTGHQHN 270
Query: 246 --SWVLSIDVSPDGMAVATGSSDRTVRLWDINTRASVQTMSNHNDQVWAVAFRP 297
+L SPD V GS+DR V +WD +R + + HN V AF P
Sbjct: 271 FEKNLLKCSWSPDNRKVTAGSADRMVYIWDTTSRRILYKLPGHNGSVNETAFHP 324
>Os03g0685600 WD40-like domain containing protein
Length = 394
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Query: 163 VLSVAWSPDGKLLACGSMDGTIAVYDAVRMKFLHHLEGHHMPVRSMVFSPVDPHVLFTAS 222
V +VA+S DG LLA GS DG I V++ LEG + + P H++ S
Sbjct: 110 VCTVAFSSDGNLLASGSFDGRINVWNTATRTLQGTLEGSGSGFEWLKWHP-RGHLIIAGS 168
Query: 223 DDCHIHIYDAKEKSLIGAMSGHASWVLSIDVSPDGMAVATGSSDRTVRLWDINTRASVQT 282
+DC++ +++A +++ +GH+S V D +PDG + TGS D ++R+WD T S
Sbjct: 169 EDCNLWMWNADHNAILNTFAGHSSTVTCGDFTPDGKLICTGSDDASLRIWDPRTAQSRHV 228
Query: 283 MSNH 286
+ H
Sbjct: 229 VRGH 232
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 121/289 (41%), Gaps = 22/289 (7%)
Query: 12 AHEESIWAAAWVPAADHRPAALLLTGALDETVRLWXXXXXXXXXXXXXRGHALGVVSLXX 71
AH + I+A A P A+L+ +G D+ LW GH V ++
Sbjct: 62 AHTDEIFAVACSPT----DASLVASGGKDDRGFLWKIGSAEDVLELA--GHTDTVCTVAF 115
Query: 72 XXXXXXXXXVSLDSYVRVFDVDSGSSVATLEAPPSEVWGIQFHPKXXXXXXXXXXXXXVK 131
S D + V++ + + TLE S +++HP+ +
Sbjct: 116 SSDGNLLASGSFDGRINVWNTATRTLQGTLEGSGSGFEWLKWHPRGHLIIAGSEDCN-LW 174
Query: 132 LWDTEKWKPITSLAVPRPEGARPDKTGSGKFVLSVAWSPDGKLLACGSMDGTIAVYDAVR 191
+W+ + + + A G V ++PDGKL+ GS D ++ ++D
Sbjct: 175 MWNADHNAILNTFA------------GHSSTVTCGDFTPDGKLICTGSDDASLRIWDPRT 222
Query: 192 MKFLHHLEGH--HMPVRSMVFSPVDPHVLFTASDDCHIHIYDAKEKSLIGAMSGHASWVL 249
+ H + GH H + + D + + S D + + + ++G++ GH +
Sbjct: 223 AQSRHVVRGHGYHTDGLTCLSVTSDSQTIVSGSKDNSVCVVNINSGQVVGSLDGHTGSIE 282
Query: 250 SIDVSPDGMAVATGSSDRTVRLWDINTRASVQTMSNHNDQVWAVAFRPP 298
+ +SP VATGS D+ + +WD+ R S++ NH++ V ++A+ P
Sbjct: 283 CVGISPSYNWVATGSMDQKLIIWDLG-RQSIRCTCNHDEGVTSLAWLGP 330
>Os10g0104500 Similar to Notchless-related
Length = 480
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 157 TGSGKFVLSVAWSPDGKLLACGSMDGTIAVYDAVRMKFLHHLEGHHMPVRSMVFSPVDPH 216
TG K V V +SPDG+ LA S D ++ +++ + KF+ GH V + +S D
Sbjct: 364 TGHQKLVNHVYFSPDGQWLASASFDKSVKLWNGITGKFVAAFRGHVADVYQISWS-ADSR 422
Query: 217 VLFTASDDCHIHIYDAKEKSLIGAMSGHASWVLSIDVSPDGMAVATGSSDRTVRLW 272
+L + S D + ++D + + L + GHA V ++D SPDG VA+G DR ++LW
Sbjct: 423 LLLSGSKDSTLKVWDIRTRKLKQDLPGHADEVYAVDWSPDGEKVASGGKDRVLKLW 478
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 14/172 (8%)
Query: 158 GSGKFVLSVAWSPDGKLLACGSMDGTIAVYDAVRMKFLHHLEGHHMPVRSMVFSPVDPHV 217
G + VL+V++SPDG+ LA GS D T+ +D L +GH V + +SP D +
Sbjct: 113 GHTEAVLAVSFSPDGRCLASGSGDTTVRFWDLSTQTPLFTCKGHKNWVLCIAWSP-DGNH 171
Query: 218 LFTASDDCHIHIYDAKEKSLIGA-MSGHASWVLSIDVSPDGMA-----VATGSSDRTVRL 271
L + S + ++D K +G ++GH W+ ++ P + + S D R+
Sbjct: 172 LVSGSKSGELILWDPKTGKQLGTPLTGHRKWITAVSWEPVHLQSPCRRFVSTSKDGDARI 231
Query: 272 WDINTRASVQTMSNHNDQVWAVAFRPPGGTGVRAGRLASVSDDKSITLYDYS 323
WD+ TR V ++ H + V V + GG G+ + + S+D SI +++ S
Sbjct: 232 WDMTTRKCVIALTGHTNSVTCVKW---GGDGL----IYTGSEDCSIKVWETS 276
>Os11g0594200 Similar to Notchless gene homolog
Length = 480
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 157 TGSGKFVLSVAWSPDGKLLACGSMDGTIAVYDAVRMKFLHHLEGHHMPVRSMVFSPVDPH 216
TG K V V +SPDG+ LA S D ++ +++ + KF+ GH V + +S D
Sbjct: 364 TGHQKLVNHVYFSPDGQWLASASFDKSVKLWNGITGKFVAAFRGHVADVYQISWS-ADSR 422
Query: 217 VLFTASDDCHIHIYDAKEKSLIGAMSGHASWVLSIDVSPDGMAVATGSSDRTVRLW 272
+L + S D + ++D + L + GHA V ++D SPDG VA+G DR ++LW
Sbjct: 423 LLLSGSKDSTLKVWDIRTHKLKQDLPGHADEVYAVDWSPDGEKVASGGKDRVLKLW 478
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 14/172 (8%)
Query: 158 GSGKFVLSVAWSPDGKLLACGSMDGTIAVYDAVRMKFLHHLEGHHMPVRSMVFSPVDPHV 217
G + VL+V++SPDG+ LA GS D T+ +D L +GH V + +SP D +
Sbjct: 113 GHTEAVLAVSFSPDGRCLASGSGDTTVRFWDLNTQTPLFTCKGHKNWVLCIAWSP-DGNH 171
Query: 218 LFTASDDCHIHIYDAKEKSLIGA-MSGHASWVLSIDVSPDGMA-----VATGSSDRTVRL 271
L + S + ++D K +G ++GH W+ ++ P + + S D R+
Sbjct: 172 LVSGSKSGELILWDPKTGKQLGTPLTGHRKWITAVSWEPVHLQAPCRRFVSASKDGDARI 231
Query: 272 WDINTRASVQTMSNHNDQVWAVAFRPPGGTGVRAGRLASVSDDKSITLYDYS 323
WDI TR V ++ H + V V + GG G+ + + S+D I +++ S
Sbjct: 232 WDITTRKCVIALTGHTNSVTCVKW---GGDGL----IYTGSEDCLIKVWETS 276
>Os03g0355200 WD40-like domain containing protein
Length = 131
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 66/121 (54%)
Query: 163 VLSVAWSPDGKLLACGSMDGTIAVYDAVRMKFLHHLEGHHMPVRSMVFSPVDPHVLFTAS 222
VL V++SP+G L+A GS D ++D + L+ + H + + F P + + L T+S
Sbjct: 8 VLGVSFSPNGYLVATGSEDNFCRIWDLRTKRMLYSIPAHKSLISHVKFEPQEGYYLATSS 67
Query: 223 DDCHIHIYDAKEKSLIGAMSGHASWVLSIDVSPDGMAVATGSSDRTVRLWDINTRASVQT 282
D ++ A++ I ++ H S V S+D+S DG + T S DRT+++W +RA
Sbjct: 68 YDTKAALWSARDYKPIKSLVAHESKVTSLDISGDGQQIVTVSHDRTIKIWSCRSRAQDNA 127
Query: 283 M 283
M
Sbjct: 128 M 128
>Os03g0725400 Similar to WD-repeat protein 5 (BMP2-induced 3-kb gene protein)
(WD-repeat protein BIG-3)
Length = 324
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 11/157 (7%)
Query: 153 RPDKTGSGKFVLSVAWSPDGKLLACGSMDGTIAVYDAVRMKF-LHHLEGHHMPVRSMVFS 211
R G + V +V +SPDG+LLA S D + V+ + + L GH V + FS
Sbjct: 12 RATLAGHRRAVSAVKFSPDGRLLASASADKLLRVWSTSDLASPVAELAGHGEGVSDLAFS 71
Query: 212 PVDPHVLFTASDDCHIHIYD---------AKEKSLIGAMSGHASWVLSIDVSPDGMAVAT 262
P D ++ +ASDD + I+D E L+ +SGH ++ + SP G +A+
Sbjct: 72 P-DGRLIASASDDRTVRIWDLGDGGGGGGGGEPRLMKTLSGHTNYAFCLAFSPHGNMLAS 130
Query: 263 GSSDRTVRLWDINTRASVQTMSNHNDQVWAVAFRPPG 299
GS D TVR+W++ + ++ + H++ V +V F G
Sbjct: 131 GSFDETVRVWEVRSGRCLRVLPAHSEPVTSVDFNRDG 167
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 101/234 (43%), Gaps = 27/234 (11%)
Query: 99 ATLEAPPSEVWGIQFHPKXXXXXXXXXXXXXVKLWDTEKWKPITSLAVPRPEGARPDKTG 158
ATL V ++F P +++W T + LA P E A G
Sbjct: 13 ATLAGHRRAVSAVKFSPDGRLLASASADKL-LRVWST------SDLASPVAELA-----G 60
Query: 159 SGKFVLSVAWSPDGKLLACGSMDGTIAVYD---------AVRMKFLHHLEGHHMPVRSMV 209
G+ V +A+SPDG+L+A S D T+ ++D + + L GH +
Sbjct: 61 HGEGVSDLAFSPDGRLIASASDDRTVRIWDLGDGGGGGGGGEPRLMKTLSGHTNYAFCLA 120
Query: 210 FSPVDPHVLFTASDDCHIHIYDAKEKSLIGAMSGHASWVLSIDVSPDGMAVATGSSDRTV 269
FSP ++L + S D + +++ + + + H+ V S+D + DG + +GS D
Sbjct: 121 FSP-HGNMLASGSFDETVRVWEVRSGRCLRVLPAHSEPVTSVDFNRDGAMIVSGSYDGLC 179
Query: 270 RLWDINTRASVQTMSNHNDQVWAVAFRPPGGTGVRAGRLASVSDDKSITLYDYS 323
R+WD T ++T+ + + A P G V A L D + L+++S
Sbjct: 180 RIWDSATGHCIKTLIDDESPPVSFAKFSPNGKFVLAATL-----DSKLRLWNFS 228
>Os07g0205200 Similar to Transcription initiation factor TFIID subunit 5
(Transcription initiation factor TFIID 100 kDa subunit)
(TAF(II)100) (TAFII-100) (TAFII100)
Length = 293
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 81/159 (50%), Gaps = 7/159 (4%)
Query: 163 VLSVAWSPDGKLLACGSMDGTIAVYDAVRMKFLHHLEGHHMPVRSMVFSPVDPHVLFTAS 222
V V +SP G A S D T ++ +++ L + GH V + + V+ + + T S
Sbjct: 87 VWDVQFSPVGHYFASASHDRTARIWSMDKIQPLRIMAGHLSDVDCVQWH-VNCNYIATGS 145
Query: 223 DDCHIHIYDAKEKSLIGAMSGHASWVLSIDVSPDGMAVATGSSDRTVRLWDINTRASVQT 282
D + ++D + I GH S VLS+ +SPDG +A+G D T+ +WDI++ V
Sbjct: 146 SDKTVRLWDVQTGECIRMFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDISSGRCVSP 205
Query: 283 MSNHNDQVWAVAFRPPGGTGVRAGRLASVSDDKSITLYD 321
+ HN VW++A+ G LAS S D ++ L+D
Sbjct: 206 LVGHNSCVWSLAYSCEGAL------LASGSADCTVKLWD 238
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 14/202 (6%)
Query: 82 SLDSYVRVFDVDSGSSVATLEAPPSEVWGIQFHPKXXXXXXXXXXXXXVKLWDTEKWKPI 141
S DS +R+++ +++ + VW +QF P ++W +K +P+
Sbjct: 61 SADSTIRLWNTKLNANLVCYKGHNYPVWDVQFSP-VGHYFASASHDRTARIWSMDKIQPL 119
Query: 142 TSLAVPRPEGARPDKTGSGKFVLSVAWSPDGKLLACGSMDGTIAVYDAVRMKFLHHLEGH 201
+A G V V W + +A GS D T+ ++D + + GH
Sbjct: 120 RIMA------------GHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQTGECIRMFIGH 167
Query: 202 HMPVRSMVFSPVDPHVLFTASDDCHIHIYDAKEKSLIGAMSGHASWVLSIDVSPDGMAVA 261
V S+ SP D + + +D I ++D + + GH S V S+ S +G +A
Sbjct: 168 RSMVLSLAMSP-DGRYMASGDEDGTIMMWDISSGRCVSPLVGHNSCVWSLAYSCEGALLA 226
Query: 262 TGSSDRTVRLWDINTRASVQTM 283
+GS+D TV+LWD+ + M
Sbjct: 227 SGSADCTVKLWDVASSTKTLKM 248
>Os05g0552300 Similar to Guanine nucleotide-binding protein beta subunit-like
protein (GPB-LR) (RWD)
Length = 336
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 88/191 (46%), Gaps = 19/191 (9%)
Query: 132 LWDTEKWKPITSLAVPRPEGARPDK-------TGSGKFVLSVAWSPDGKLLACGSMDGTI 184
+WD P T++A PE A P+ TG FV V S DG+ GS DG +
Sbjct: 44 VWDITN--PSTAVATD-PEAAPPEYGVSYRRLTGHSHFVQDVVLSSDGQFALSGSWDGEL 100
Query: 185 AVYDAVRMKFLHHLEGHHMPVRSMVFSPVDPHVLFTASDDCHIHIYD--AKEKSLI---- 238
++D + GH V S+ FS VD + +A+ D I +++ + K I
Sbjct: 101 RLWDLATGRTTRRFVGHTKDVLSVAFS-VDNRQIVSAARDNTIKLWNTLGECKYTIGGDH 159
Query: 239 GAMSGHASWVLSIDVSPDGMA--VATGSSDRTVRLWDINTRASVQTMSNHNDQVWAVAFR 296
GA GH WV + SP+ MA + +GS DR+V++W++ + HN V AVA
Sbjct: 160 GAGEGHTGWVSCVRFSPNPMAPTIVSGSWDRSVKVWNLTNCKLRTKLEGHNGYVNAVAVS 219
Query: 297 PPGGTGVRAGR 307
P G G+
Sbjct: 220 PDGSLCASGGK 230
>Os03g0339100 Similar to PRL1 protein
Length = 472
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 1/136 (0%)
Query: 162 FVLSVAWSPDGKLLACGSMDGTIAVYDAVRMKFLHHLEGHHMPVRSMVFSPVDPHVLFTA 221
+V S+A+ P + GS D TI ++D L GH +R + S + LF+A
Sbjct: 164 WVRSIAFDPSNEWFCTGSADRTIKIWDLASGTLKLTLTGHIEQIRGLAVSQRHTY-LFSA 222
Query: 222 SDDCHIHIYDAKEKSLIGAMSGHASWVLSIDVSPDGMAVATGSSDRTVRLWDINTRASVQ 281
DD + +D ++ +I + GH S V + + P + TG D R+WDI T+A V
Sbjct: 223 GDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTIDILLTGGRDSVCRVWDIRTKAHVS 282
Query: 282 TMSNHNDQVWAVAFRP 297
++ H++ V +V RP
Sbjct: 283 ALTGHDNTVCSVFARP 298
>Os06g0649500 WD40-like domain containing protein
Length = 654
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 7/156 (4%)
Query: 166 VAWSPDGKLLACGSMDGTIAVYDAVRMKFLHHLEGHHMPVRSMVFSPVDPHVLFTASDDC 225
V +SP G A S D T ++ +++ L + GH V + + V+ + + T S D
Sbjct: 454 VQFSPVGHYFASASHDRTARIWSMDKIQPLRIMAGHLSDVDCVQWH-VNCNYIATGSSDK 512
Query: 226 HIHIYDAKEKSLIGAMSGHASWVLSIDVSPDGMAVATGSSDRTVRLWDINTRASVQTMSN 285
+ ++D + I GH S VLS+ +SPDG +A+G D T+ +WD+++ V +
Sbjct: 513 TVRLWDVQTGECIRMFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSSGRCVSPLGG 572
Query: 286 HNDQVWAVAFRPPGGTGVRAGRLASVSDDKSITLYD 321
H+ VW++A+ G LAS S D ++ L+D
Sbjct: 573 HSSCVWSLAYSCEGAL------LASGSADCTVKLWD 602
>Os05g0407200 WD40-like domain containing protein
Length = 463
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 163 VLSVAWSPDGKLLACGSMDGTIAVYDAVRMKFLHHLEGHHMPVRSMVFSPVDPHVLFTAS 222
+ SV +S DG+ L GS D +I VYD V K L HH V ++ F+ H++++ S
Sbjct: 213 IFSVKFSSDGRELVAGSNDDSIYVYDLVANKLTLRLPAHHSDVNTVAFADETGHLIYSGS 272
Query: 223 DDCHIHIYDAKEKSL---IGAMSGHASWVLSIDVSPDGMAVATGSSDRTVRLWDINTRAS 279
DD ++D + S G ++GH + ID DG + D+ +++WDI S
Sbjct: 273 DDNLCKVWDRRCLSTEEPAGVLTGHLHGITHIDSRGDGRCFISNGKDQAIKMWDIRKMTS 332
>AK110077
Length = 1242
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 79/161 (49%), Gaps = 7/161 (4%)
Query: 163 VLSVAWSPDGKLLACGSMDGTIAVYDAVRMKFLHHLEGHHMPVRSMVFSPVDPHVLFTAS 222
V +A+ P LLA +G+I +++ LE H PVR + F P P +L +
Sbjct: 14 VKGIAFHPRLPLLASSLHNGSIQLWNYQTGTIYDRLEEHDGPVRGICFHPSQP-LLVSGG 72
Query: 223 DDCHIHIYDAKEKSLIGAMSGHASWVLSIDVSPDGMAVATGSSDRTVRLWDINTRASVQT 282
DD I +++ K + + ++GH +V ++ + + + S D+T+R+W+ +R +
Sbjct: 73 DDYKIKVWNHKTRKCLFTLNGHLDYVRTVFFHHEHPWILSASDDQTIRIWNWQSRTCIAI 132
Query: 283 MSNHNDQVWAVAFRPPGGTGVRAGRLASVSDDKSITLYDYS 323
++ HN V F P + + S S D+++ ++D S
Sbjct: 133 LTGHNHYVMCAQFHP------KDDLIVSASMDQTVRVWDIS 167
>Os04g0592700 Quinonprotein alcohol dehydrogenase-like domain containing protein
Length = 891
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 93/214 (43%), Gaps = 5/214 (2%)
Query: 82 SLDSYVRVFDVDSGSSVATLEAPPSEVWGIQFHPKXXXXXXXXXXXXXVKLWDTEKWK-P 140
S DS VR++D++ S + + + + F K +K+W W
Sbjct: 431 SKDSTVRLWDMERRSCIGIGKGHLGAIGSVAFSKKSKNFFVSGSSDRTIKIW---SWDDT 487
Query: 141 ITSLAVPRPEGARPDKTGSGKFVLSVAWSPDGKLLACGSMDGTIAVYDAVRMKFLHHLEG 200
+ + P A+ K + S++ SP+ L+ GS D T ++ + L+G
Sbjct: 488 LDDVGSEVPLKAKAVVAAHDKDINSLSVSPNDGLVCSGSEDRTACIWKLPNLVPSVVLKG 547
Query: 201 HHMPVRSMVFSPVDPHVLFTASDDCHIHIYDAKEKSLIGAMSGHASWVLSIDVSPDGMAV 260
H + S+ FSPV+ V+ T+S D + I+ + S + GH S VL G
Sbjct: 548 HKRGIWSVEFSPVEQCVI-TSSGDRTVKIWAVADGSCLKTFEGHTSSVLRASFLSHGTQF 606
Query: 261 ATGSSDRTVRLWDINTRASVQTMSNHNDQVWAVA 294
+ SD V+LW I T + T H+ +VWA+A
Sbjct: 607 VSCGSDGLVKLWTIKTNECIATFDKHDGKVWALA 640
>Os06g0143900 Similar to Coatomer protein complex, beta prime
Length = 907
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 91/214 (42%), Gaps = 14/214 (6%)
Query: 84 DSYVRVFDVDSGSSVATLEAPPSEVWGIQFHPKXXXXXXXXXXXXXVKLWDTEKWKPITS 143
D ++RV++ ++ V EA + + HP +KLWD +K T
Sbjct: 78 DMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHP-TLPYVLSSSDDMLIKLWDWDKGWMCTQ 136
Query: 144 LAVPRPEGARPDKTGSGKFVLSVAWSP-DGKLLACGSMDGTIAVYDAVRMKFLHHLEGHH 202
+ G +V+ V ++P D A S+D T ++ L+GH
Sbjct: 137 IF-----------EGHSHYVMQVTFNPKDTNTFASASLDRTTKIWSLGSPDPNFTLDGHQ 185
Query: 203 MPVRSM-VFSPVDPHVLFTASDDCHIHIYDAKEKSLIGAMSGHASWVLSIDVSPDGMAVA 261
V + F+ D L T SDD ++D + KS + + GH + ++ P+ +
Sbjct: 186 KGVNCVDYFTGGDRPYLITGSDDSTAKVWDYQTKSCVQTLEGHTHNISAVCFHPELPIII 245
Query: 262 TGSSDRTVRLWDINTRASVQTMSNHNDQVWAVAF 295
TGS D TVR+W T T++ ++VWAV +
Sbjct: 246 TGSEDGTVRIWHSTTYRLENTLNYGLERVWAVGY 279
>AK111235
Length = 351
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 19/167 (11%)
Query: 163 VLSVAWSPDGKLLACGSMDGTIAVYD-AVR---MKFLHHLEGHHMPVRSMVFSPVDPHVL 218
V++ A+SP G +ACG +D ++Y+ + R + L GH + F + +
Sbjct: 110 VMTCAYSPSGNYVACGGLDNICSIYNLSAREGPTRVARELSGHSGYLSCCRF--ISDKRI 167
Query: 219 FTASDDCHIHIYDAKEKSLIGAMSGHASWVLSIDVSP-DGMAVATGSSDRTVRLWDINTR 277
T+S D ++D + S + + H V+S+ ++P D +G+ D +LWDI +
Sbjct: 168 PTSSGDMTCVLWDLETGSKVHEFADHLGDVMSLSINPLDHNQFVSGACDAFAKLWDIRQQ 227
Query: 278 ASVQTMSNHNDQVWAVAFRPPG---GTGVRAGRLASVSDDKSITLYD 321
VQT + H+ + A+ F P G GTG SDD S L+D
Sbjct: 228 KCVQTFAAHDSDINAIQFFPNGNAFGTG---------SDDASCRLFD 265
>Os10g0494800 Similar to Katanin p80 WD40-containing subunit B1 (Katanin p80
subunit B1) (p80 katanin)
Length = 875
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 89/219 (40%), Gaps = 19/219 (8%)
Query: 103 APPSEVWGIQFHPKXXXXXXXXXXXXXVKLWDTEKWKPITSLAVPRPEGARPDKTGSGKF 162
A S+V ++F K V LW K I SL+ G
Sbjct: 14 AHASDVNCVKFGRKTSRILITGGEDQKVNLWAIGKPSSILSLS------------GLTSP 61
Query: 163 VLSVAWSPDGKLLACGSMDGTIAVYDAVRMKFLHHLEGHHMPVRSMVFSPVDPHVLFTAS 222
V SV++ ++ G+ GTI ++D K + GH S+ F P + S
Sbjct: 62 VESVSFDSSEAMIGAGASSGTIKIWDVDEAKVVRTFTGHRSSCASLDFHPFG-EFFASGS 120
Query: 223 DDCHIHIYDAKEKSLIGAMSGHASWVLSIDVSPDGMAVATGSSDRTVRLWDINTRASVQT 282
D ++ I+D ++K I GH + + +PDG + +G SD +V++WD+ +
Sbjct: 121 SDTNMKIWDMRKKGCIHTYKGHTRRIDVLRFTPDGRWIVSGGSDNSVKIWDLTAGKLLHD 180
Query: 283 MSNHNDQVWAVAFRPPGGTGVRAGRLASVSDDKSITLYD 321
NH + + F P LA+ S DK++ +D
Sbjct: 181 FRNHEGPINCLDFHP------HEFLLATGSADKTVKFWD 213
>Os07g0252000 WD40-like domain containing protein
Length = 353
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 20/177 (11%)
Query: 160 GKFVLSVAWSPDGKLLACGSMDGTIAV--YDAVRMKFLHHLEGHHMPVRSMVFSPVDPHV 217
+ V S AWSPDGKLLA S D T A+ Y + + LEGH V+S+ +S +
Sbjct: 72 NRTVRSCAWSPDGKLLATASFDSTTAIWEYSGGDFECVATLEGHENEVKSVSWS-ASGSL 130
Query: 218 LFTASDDCHIHIYDAK---EKSLIGAMSGHASWVLSIDVSPDGMAVATGSSDRTVRLW-- 272
L T S D + I++ + E + GH V + P + + S D ++R+W
Sbjct: 131 LATCSRDKSVWIWEMQPGNEYECVSVQQGHTQDVKMVQWHPILDVLVSVSYDNSIRVWAD 190
Query: 273 -DINTRASVQTMSN-----HNDQVWAVAFRPPGGTGVRAGRLASVSDDKSITLYDYS 323
+ VQT++ H+ VWA++F G R+ + SDD ++ ++D S
Sbjct: 191 DGDDEWHCVQTLTEANNCGHSSTVWALSFNQKG------DRMVTCSDDHTLKIWDTS 241
>Os01g0322800 WD40-like domain containing protein
Length = 517
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 66/137 (48%), Gaps = 14/137 (10%)
Query: 163 VLSVAWSPDGKLLACGSMDGTIAVYDAVRMKFLHHLE-GHHMPVRSMVFSPVDPHVLFTA 221
VLSV +S D ++LA GS DG I V+ + L LE H V S+ FS D + ++
Sbjct: 271 VLSVDFSRDSEMLASGSQDGKIKVWRIRTGQCLRRLERAHAKGVTSVTFSR-DGTQILSS 329
Query: 222 SDDCHIHIYDAKEKSLIGAMSGHASWVLSIDVSPDGMAVATGSSDRTVRLWDINTRASVQ 281
S D ++ K ++ GH S+V S DG V T SSD TV++WD T +Q
Sbjct: 330 SFDTTARVHGLKSGKMLKEFRGHNSYVNCAIFSTDGSRVITASSDCTVKVWDTKTTDCLQ 389
Query: 282 TMSNHNDQVWAVAFRPP 298
T F+PP
Sbjct: 390 T------------FKPP 394
>AK110120
Length = 830
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 16/220 (7%)
Query: 84 DSYVRVFDVDSGSSVATLEAPPSEVWGIQFHPKXXXXXXXXXXXXXVKLWDTEK-WKPIT 142
D +R F+ ++ V + EA P + + HP +K+WD +K W+ +
Sbjct: 78 DFQLRAFNYNTHEKVISFEAHPDYIRCLTVHP-TGPYVLTGSDDMAIKMWDWDKGWRLMH 136
Query: 143 SLAVPRPEGARPDKTGSGKFVLSVAWSP-DGKLLACGSMDGTIAVYDAVRMKFLHHLEGH 201
+ G +++++ ++P D A S+D T+ V+ L+ H
Sbjct: 137 TFE------------GHTHYIMNLCFNPKDSNTFASSSLDRTVKVWTLGSSVANFTLDAH 184
Query: 202 HMPVRSM-VFSPVDPHVLFTASDDCHIHIYDAKEKSLIGAMSGHASWVLSIDVSPDGMAV 260
V + F + + T DD + I+D KS + ++GH S V P +
Sbjct: 185 DKGVNYVEYFHGGEKPYMLTVGDDRTVKIWDYLSKSCVQTLTGHTSNVSFAVFHPSLPLI 244
Query: 261 ATGSSDRTVRLWDINTRASVQTMSNHNDQVWAVAFRPPGG 300
+GS D TV+LW NT T+ ++VW VA++ G
Sbjct: 245 ISGSEDGTVKLWHSNTYRLESTLDYGLERVWCVAYKRTGN 284
>AK110547
Length = 412
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 11/162 (6%)
Query: 138 WKPITSLAVPRPEGARPDKTGSGKFVLSVAWSPDGKLLACGSMDGTIAVYDAVRMKFLHH 197
W+ V PEG G V +AW P G +L GS D T+ ++ A +
Sbjct: 154 WRVADGSCVQAPEG-------PGDGVDWLAWHPKGDILLAGSEDFTMWMWLAQTGNCMQV 206
Query: 198 LEGHHMPVRSMVFSPVDPHVL-FTASDDCHIHIYDAKEKSLIGAMSG---HASWVLSIDV 253
GH PV + F+P V+ +DC + +++ K + G H + + V
Sbjct: 207 FSGHSGPVTAGAFTPDGKLVVSVGGENDCSLRVWNPKTGECTVQLQGRPFHEDSITCLGV 266
Query: 254 SPDGMAVATGSSDRTVRLWDINTRASVQTMSNHNDQVWAVAF 295
PDG V TG+ D +VR+ +I+ V ++ H D V A F
Sbjct: 267 HPDGSVVITGAQDGSVRVSNIHNSRIVASLQGHEDSVEAAGF 308
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,217,153
Number of extensions: 426302
Number of successful extensions: 2091
Number of sequences better than 1.0e-10: 25
Number of HSP's gapped: 2023
Number of HSP's successfully gapped: 37
Length of query: 323
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 222
Effective length of database: 11,762,187
Effective search space: 2611205514
Effective search space used: 2611205514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)