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Os05g0407200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : WD40-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.0146) R2 : 0.745
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.33 (0.0365) R2dC : 0.745 R2C : 0.745
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00691 (0.0308) R2dN8 : 3.65e-05 R2N8 : 0.000199
σ : 0.276
deviance : 34.71
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C
peak time of C : 15.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
26.64 0.243 11 0.169 1.28 0.581 -0.346 -0.676 0.0741 14.7 30.2 706 -- --
26.65 0.24 11 0.226 1.28 0.506 -0.337 -- 0.0733 14.7 30.2 708 -- --
27.04 0.242 11 0.178 1.28 0.545 -- -0.447 0.0733 14.7 30.2 725 -- --
27.05 0.242 11 0.215 1.28 0.495 -- -- 0.0703 14.7 30.2 727 -- --
72.37 0.396 11.1 -0.182 -- 1.6 -- -0.962 -0.23 -- 24.03 97 -- --
32.31 0.266 11 0.292 1.34 -- -0.261 -- 0.0265 15.1 -- -- -- --
32.54 0.267 11 0.287 1.34 -- -- -- 0.025 15.1 -- -- -- --
73.77 0.4 11.1 -0.0152 -- 1.51 -- -- -0.179 -- 24 87 -- --
28.26 0.248 11 -- 1.28 0.524 -- -- 0.0522 14.7 30.14 735 -- --
134.6 0.542 11 0.23 -- -- -- -- -0.00978 -- -- -- -- --
34.71 0.276 11 -- 1.33 -- -- -- -0.00691 15.1 -- -- -- --
73.77 0.4 11.1 -- -- 1.51 -- -- -0.178 -- 24 87 -- --
135.99 0.544 11 -- -- -- -- -- -0.0353 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 23.75 humidity 50.0 720 > th dose independent rect. 16 14
2 24.16 humidity 50.0 720 > th dose independent rect. 16 5
3 24.25 radiation 10.0 720 < th dose dependent rect. 16 5
4 24.26 temperature 30.0 270 < th dose independent rect. 16 13
9 24.75 humidity 70.0 10 > th dose independent rect. 18 12
11 24.80 radiation 10.0 720 < th dose dependent rect. 16 13
12 24.83 temperature 30.0 720 < th dose independent rect. 17 4
17 24.91 radiation 30.0 720 < th dose dependent rect. 16 14
22 25.04 humidity 50.0 270 > th dose independent rect. 8 13
28 25.23 temperature 30.0 720 < th dose independent rect. 9 3
29 25.24 temperature 10.0 30 > th dose dependent rect. 23 21
31 25.25 radiation 1.0 720 < th dose independent rect. 18 1
32 25.26 radiation 10.0 720 < th dose dependent rect. 17 11
34 25.27 humidity 50.0 720 > th dose independent rect. 16 21
37 25.28 radiation 1.0 720 < th dose independent rect. 17 4
38 25.29 radiation 1.0 720 < th dose independent rect. 17 11
39 25.29 temperature 30.0 270 < th dose independent rect. 9 12
46 25.35 temperature 30.0 720 < th dose independent rect. 17 19
48 25.36 temperature 10.0 270 > th dose dependent rect. 20 22
50 25.38 temperature 30.0 720 < th dose independent rect. 11 1
54 25.40 humidity 50.0 720 > th dose independent rect. 24 21
55 25.41 temperature 30.0 720 < th dose independent rect. 24 21
60 25.48 temperature 30.0 720 < th dose independent rect. 9 20
61 25.48 temperature 10.0 90 > th dose dependent rect. 6 13
69 25.52 radiation 20.0 720 < th dose independent rect. 16 14
77 25.56 temperature 10.0 720 > th dose dependent rect. 13 4
81 25.62 temperature 10.0 720 > th dose dependent rect. 21 20
88 25.64 temperature 10.0 720 > th dose dependent rect. 6 1
89 25.64 atmosphere 1005.0 10 > th dose dependent rect. 12 11
94 25.66 temperature 25.0 720 > th dose dependent rect. 14 3
100 25.69 humidity 50.0 720 > th dose independent rect. 9 20
128 25.79 temperature 10.0 720 > th dose dependent rect. 6 3
131 25.82 temperature 30.0 720 > th dose independent rect. 14 3
135 25.84 temperature 30.0 720 < th dose independent rect. 1 11
139 25.85 humidity 70.0 270 > th dose independent rect. 18 1
155 25.88 temperature 30.0 720 < th dose independent rect. 24 13
169 25.92 radiation 1.0 720 > th dose independent rect. 14 17
171 25.93 temperature 30.0 720 > th dose independent rect. 15 1
174 25.93 atmosphere 1005.0 90 > th dose dependent rect. 11 11
185 25.96 temperature 10.0 720 > th dose dependent rect. 12 21
192 25.98 precipitation 0.1 720 < th dose independent rect. 6 18
196 25.98 precipitation 0.1 720 < th dose dependent rect. 6 18
220 26.04 radiation 1.0 720 < th dose dependent sin 0 NA
223 26.05 humidity 50.0 720 > th dose independent rect. 7 23
226 26.05 temperature 30.0 30 < th dose dependent rect. 11 12
228 26.06 humidity 50.0 720 > th dose dependent rect. 18 1
230 26.06 temperature 10.0 270 > th dose dependent rect. 12 13
232 26.06 radiation 1.0 720 < th dose dependent rect. 3 17
270 26.14 radiation 1.0 720 > th dose independent rect. 13 20
307 26.19 temperature 25.0 270 > th dose dependent rect. 12 21
309 26.20 precipitation 0.1 720 < th dose independent rect. 14 10
312 26.20 precipitation 0.1 720 < th dose dependent rect. 14 10
333 26.24 temperature 10.0 270 > th dose dependent rect. 3 23
359 26.28 precipitation 0.1 270 < th dose independent rect. 13 12
362 26.28 precipitation 0.1 270 < th dose dependent rect. 13 12
405 26.35 precipitation 0.1 720 < th dose independent rect. 12 6
409 26.35 precipitation 0.1 720 < th dose dependent rect. 12 6
410 26.35 temperature 25.0 270 > th dose dependent rect. 12 14
413 26.35 temperature 25.0 90 > th dose dependent rect. 15 16
432 26.37 precipitation 0.1 720 < th dose independent rect. 12 14
436 26.37 precipitation 0.1 720 < th dose dependent rect. 12 14
492 26.43 humidity 60.0 720 < th dose independent rect. 13 4
506 26.44 temperature 25.0 270 > th dose dependent sin 18 NA
517 26.45 temperature 25.0 90 > th dose dependent rect. 15 12
521 26.45 temperature 25.0 10 > th dose dependent rect. 15 18
541 26.47 temperature 25.0 90 > th dose dependent sin 15 NA
573 26.50 humidity 70.0 30 > th dose independent rect. 18 5
574 26.50 precipitation 0.1 720 < th dose independent rect. 4 14
578 26.50 humidity 70.0 720 < th dose dependent rect. 15 2
581 26.50 precipitation 0.1 720 < th dose dependent rect. 4 14
590 26.51 radiation 1.0 720 < th dose independent rect. 24 21
622 26.53 temperature 30.0 270 > th dose independent rect. 13 6
640 26.53 temperature 25.0 90 > th dose dependent rect. 15 5
728 26.57 atmosphere 1005.0 270 > th dose dependent rect. 18 1
886 26.65 precipitation 0.1 720 < th dose independent rect. 13 20
908 26.65 precipitation 0.1 720 < th dose dependent rect. 13 20
911 26.65 temperature 30.0 270 < th dose dependent rect. 24 22
922 26.66 temperature 30.0 720 > th dose dependent no NA NA
985 26.66 temperature 30.0 90 < th dose dependent rect. 3 20