BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0407200 Os05g0407200|AK072186
(463 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0407200 WD40-like domain containing protein 932 0.0
Os05g0144100 WD40-like domain containing protein 414 e-115
Os01g0383700 Conserved hypothetical protein 91 2e-18
Os06g0653800 Similar to WD-repeat protein 57 (Prp8-binding ... 78 2e-14
Os11g0660300 WD40-like domain containing protein 70 5e-12
Os03g0355200 WD40-like domain containing protein 67 3e-11
>Os05g0407200 WD40-like domain containing protein
Length = 463
Score = 932 bits (2408), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/463 (97%), Positives = 451/463 (97%)
Query: 1 MGYGMSRMEEEYSEHEDXXXXXXXXXXXXEFLNTHNDIFHMTQIRSGPSESLRKSIGTSK 60
MGYGMSRMEEEYSEHED EFLNTHNDIFHMTQIRSGPSESLRKSIGTSK
Sbjct: 1 MGYGMSRMEEEYSEHEDQNNGGSNSQVNNEFLNTHNDIFHMTQIRSGPSESLRKSIGTSK 60
Query: 61 DVISTTRLLSGREINSSGNGKFSSVDRAFLLGRYLPVDGPEIVDRMDSRAYVSQFSADGS 120
DVISTTRLLSGREINSSGNGKFSSVDRAFLLGRYLPVDGPEIVDRMDSRAYVSQFSADGS
Sbjct: 61 DVISTTRLLSGREINSSGNGKFSSVDRAFLLGRYLPVDGPEIVDRMDSRAYVSQFSADGS 120
Query: 121 LFVAGFQGSHIRIYDVDKGWKVHRDIHARSLRWTISDASLSPDQQFLVYSSLAPIIHIVN 180
LFVAGFQGSHIRIYDVDKGWKVHRDIHARSLRWTISDASLSPDQQFLVYSSLAPIIHIVN
Sbjct: 121 LFVAGFQGSHIRIYDVDKGWKVHRDIHARSLRWTISDASLSPDQQFLVYSSLAPIIHIVN 180
Query: 181 VGTAAKQSYANITDIHDGLDFSQHEDVRYTFGIFSVKFSSDGRELVAGSNDDSIYVYDLV 240
VGTAAKQSYANITDIHDGLDFSQHEDVRYTFGIFSVKFSSDGRELVAGSNDDSIYVYDLV
Sbjct: 181 VGTAAKQSYANITDIHDGLDFSQHEDVRYTFGIFSVKFSSDGRELVAGSNDDSIYVYDLV 240
Query: 241 ANKLTLRLPAHHSDVNTVAFADETGHLIYSGSDDNLCKVWDRRCLSTEEPAGVLTGHLHG 300
ANKLTLRLPAHHSDVNTVAFADETGHLIYSGSDDNLCKVWDRRCLSTEEPAGVLTGHLHG
Sbjct: 241 ANKLTLRLPAHHSDVNTVAFADETGHLIYSGSDDNLCKVWDRRCLSTEEPAGVLTGHLHG 300
Query: 301 ITHIDSRGDGRCFISNGKDQAIKMWDIRKMTSNADSYEDRTSNWDYRYSRYPQQYKQLKH 360
ITHIDSRGDGRCFISNGKDQAIKMWDIRKMTSNADSYEDRTSNWDYRYSRYPQQYKQLKH
Sbjct: 301 ITHIDSRGDGRCFISNGKDQAIKMWDIRKMTSNADSYEDRTSNWDYRYSRYPQQYKQLKH 360
Query: 361 PHDQSIATYWGHSVLRTLIRCYFSPAYSTGQKYIYTGSYDSSVCIYDVVSGSQVAKLKGY 420
PHDQSIATYWGHSVLRTLIRCYFSPAYSTGQKYIYTGSYDSSVCIYDVVSGSQVAKLKGY
Sbjct: 361 PHDQSIATYWGHSVLRTLIRCYFSPAYSTGQKYIYTGSYDSSVCIYDVVSGSQVAKLKGY 420
Query: 421 HQLAIRDCSWHPFDPMLVSSSWDGRVAKWSRSSCQQEETTDLD 463
HQLAIRDCSWHPFDPMLVSSSWDGRVAKWSRSSCQQEETTDLD
Sbjct: 421 HQLAIRDCSWHPFDPMLVSSSWDGRVAKWSRSSCQQEETTDLD 463
>Os05g0144100 WD40-like domain containing protein
Length = 329
Score = 414 bits (1063), Expect = e-115, Method: Compositional matrix adjust.
Identities = 195/301 (64%), Positives = 244/301 (81%), Gaps = 1/301 (0%)
Query: 152 RWTISDASLSPDQQFLVYSSLAPIIHIVNVGTAAKQSYANITDIHDGLDFSQHEDVRYTF 211
+WT+SD +LSPDQQ L YSSL+P +HIVNV ++AK+S AN+T+IHDGL+FS +D Y+F
Sbjct: 1 QWTVSDIALSPDQQLLAYSSLSPTVHIVNVQSSAKESQANVTEIHDGLEFSNDDDDEYSF 60
Query: 212 GIFSVKFSSDGRELVAGSNDDSIYVYDLVANKLTLRLPAHHSDVNTVAFADETGHLIYSG 271
GIFSVKFS DG+E+V G++D SI VYDL ANK+++R+ AH +DVN V FADE+G+L+YSG
Sbjct: 61 GIFSVKFSKDGQEIVVGNSDRSINVYDLRANKVSVRIRAHAADVNAVTFADESGNLLYSG 120
Query: 272 SDDNLCKVWDRRCLSTEEPAGVLTGHLHGITHIDSRGDGRCFISNGKDQAIKMWDIRKMT 331
SDDNLCKVWDRRCL+ E+PAGVLTGHL GIT IDSRGDGR FISN KDQ IK+WD+RKM+
Sbjct: 121 SDDNLCKVWDRRCLAREKPAGVLTGHLDGITFIDSRGDGRYFISNCKDQTIKLWDVRKMS 180
Query: 332 SNADSYEDRTSNWDYRYSRYPQQYKQLKHPHDQSIATYWGHSVLRTLIRCYFSPAYSTGQ 391
++ + R +WDYR+ +P + + KHP+DQS+ATY GHSVLRTLIRCYFSP YSTGQ
Sbjct: 181 ASIKGRQPRFFDWDYRWMSFPLEARHCKHPNDQSLATYRGHSVLRTLIRCYFSPVYSTGQ 240
Query: 392 KYIYTGSYDSSVCIYDVVSGSQVAKLKGYHQLAIRDCSWHPFDPMLVSSSWDGRVAKWSR 451
+YIYTGS D V IYDVV+G V KL +H IRDC+WHP++ +VSSSWDG +A+W
Sbjct: 241 RYIYTGSSDEYVYIYDVVTGDIVEKL-SWHGSIIRDCTWHPYNLTIVSSSWDGYLARWEA 299
Query: 452 S 452
S
Sbjct: 300 S 300
>Os01g0383700 Conserved hypothetical protein
Length = 120
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Query: 36 NDIFHMTQIRSGPSESLRKSIGTSKDV-ISTTRLLSGREINSSGNGKFSSVDRAFLLGRY 94
++ H+T+++S P E R S+ K IST +LLSGRE N G G+FSS D ++ L ++
Sbjct: 31 EEVSHLTRLKSEPCERTRASLHAGKKRHISTFKLLSGRESNCLGIGRFSSADCSYALRKH 90
Query: 95 LPVDGPEIVDRMDSRAYVSQFSADGSLFVA 124
LPV GP VD MDS AY+SQFSADGSL +
Sbjct: 91 LPVKGPWCVDDMDSEAYISQFSADGSLLIG 120
>Os06g0653800 Similar to WD-repeat protein 57 (Prp8-binding protein) (hPRP8BP)
(U5 snRNP- specific 40 kDa protein) (38 kDa splicing
factor)
Length = 343
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 116/250 (46%), Gaps = 24/250 (9%)
Query: 212 GIFSVKFSSDGRELVAGSNDDSIYVYDLVANKLTLRLPAHHSDVNTVAFADETGHLIYSG 271
+ +++++DG ++++ S D ++ V+D+ K ++ H S VN+ A + L+ SG
Sbjct: 98 AVLDLQWTTDGTQIISASPDKTVRVWDVETGKQVKKMAEHSSFVNSCCPARKWPPLVVSG 157
Query: 272 SDDNLCKVWDRRCLSTEEPAGVLTGHLHGITHIDSRGDGRCFISNGKDQAIKMWDIRK-- 329
SDD K+WD R + A + IT + + G D +K WD+RK
Sbjct: 158 SDDGTAKLWDLR----QRGAIQTLPDKYQITAVSFSEAADKVFTGGLDNDVKWWDLRKNE 213
Query: 330 MTSNADSYEDRTSNW----DYRYSRYPQQYKQLK-------HPHDQSIATYWG--HSVLR 376
+T ++D + D Y +LK P +++I T G H+ +
Sbjct: 214 VTEYLKGHQDMITGMQLSPDGSYLLTNAMDNELKIWDLRPYAPENRNIKTLTGHQHNFEK 273
Query: 377 TLIRCYFSPAYSTGQKYIYTGSYDSSVCIYDVVSGSQVAKLKGYHQLAIRDCSWHPFDPM 436
L++C +SP + + GS D V I+D S + KL G H ++ + ++HP +P+
Sbjct: 274 NLLKCSWSP----DNRKVTAGSADRMVYIWDTTSRRILYKLPG-HNGSVNETAFHPTEPV 328
Query: 437 LVSSSWDGRV 446
+ S D ++
Sbjct: 329 IGSCGSDKQI 338
>Os11g0660300 WD40-like domain containing protein
Length = 323
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 213 IFSVKFSSDGRELVAGSNDDSIYVYDLVANKLTLRLPAHHSDVNTVAFADETGHLIYSGS 272
+ SV +S DG+ L GS D +I VYD V K L HH V ++ F+ H++++ S
Sbjct: 163 VLSVAWSPDGKLLACGSMDGTIAVYDAVRMKFLHHLEGHHMPVRSMVFSPVDPHVLFTAS 222
Query: 273 DDNLCKVWDRRCLSTEEPAGVLTGHLHGITHIDSRGDGRCFISNGKDQAIKMWDIRKMTS 332
DD ++D + S G ++GH + ID DG + D+ +++WDI S
Sbjct: 223 DDCHIHIYDAKEKSL---IGAMSGHASWVLSIDVSPDGMAVATGSSDRTVRLWDINTRAS 279
>Os03g0355200 WD40-like domain containing protein
Length = 131
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 207 VRYTFGIFSVKFSSDGRELVAGSNDDSIYVYDLVANKLTLRLPAHHSDVNTVAFADETGH 266
+ +F + V FS +G + GS D+ ++DL ++ +PAH S ++ V F + G+
Sbjct: 2 ILLSFQVLGVSFSPNGYLVATGSEDNFCRIWDLRTKRMLYSIPAHKSLISHVKFEPQEGY 61
Query: 267 LIYSGSDDNLCKVWDRRCLSTEEPAGVLTGHLHGITHIDSRGDGRCFISNGKDQAIKMWD 326
+ + S D +W R +P L H +T +D GDG+ ++ D+ IK+W
Sbjct: 62 YLATSSYDTKAALWSAR---DYKPIKSLVAHESKVTSLDISGDGQQIVTVSHDRTIKIWS 118
Query: 327 IR 328
R
Sbjct: 119 CR 120
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,931,921
Number of extensions: 680363
Number of successful extensions: 2328
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 2346
Number of HSP's successfully gapped: 6
Length of query: 463
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 359
Effective length of database: 11,605,545
Effective search space: 4166390655
Effective search space used: 4166390655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)