Os05g0144100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os05g0144100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : WD40-like domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.14 | 0.266 | 13.4 | -0.124 | 0.879 | -1.04 | -0.336 | 0.0153 | 0.3 | 21.7 | 18 | 2 | -- | -- |
| 32.07 | 0.266 | 13.4 | -0.128 | 0.88 | -1.05 | -0.339 | -- | 0.299 | 21.7 | 18 | 2 | -- | -- |
| 32.43 | 0.267 | 13.4 | -0.0713 | 0.88 | -1.07 | -- | 0.257 | 0.313 | 21.7 | 18 | 2 | -- | -- |
| 32.5 | 0.267 | 13.4 | -0.113 | 0.881 | -1.06 | -- | -- | 0.301 | 21.7 | 18 | 2 | -- | -- |
| 75.28 | 0.404 | 13.3 | 0.0676 | -- | -1.46 | -- | 0.565 | 0.385 | -- | 17.99 | 2 | -- | -- |
| 46.7 | 0.32 | 13.4 | -0.351 | 1.06 | -- | -0.321 | -- | 0.127 | 22.9 | -- | -- | -- | -- |
| 47.13 | 0.322 | 13.4 | -0.338 | 1.06 | -- | -- | -- | 0.128 | 22.9 | -- | -- | -- | -- |
| 75.54 | 0.405 | 13.3 | -0.0245 | -- | -1.45 | -- | -- | 0.361 | -- | 17.83 | 2 | -- | -- |
| 32.8 | 0.268 | 13.4 | -- | 0.876 | -1.13 | -- | -- | 0.319 | 21.6 | 17.6 | 2 | -- | -- |
| 117.39 | 0.506 | 13.4 | -0.315 | -- | -- | -- | -- | 0.136 | -- | -- | -- | -- | -- |
| 50.14 | 0.331 | 13.4 | -- | 1.06 | -- | -- | -- | 0.166 | 22.9 | -- | -- | -- | -- |
| 75.55 | 0.405 | 13.3 | -- | -- | -1.46 | -- | -- | 0.365 | -- | 17.74 | 2 | -- | -- |
| 120.01 | 0.511 | 13.4 | -- | -- | -- | -- | -- | 0.171 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.78 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 8 | 32.55 | temperature | 15.0 | 10 | > th | dose dependent | no | NA | NA |
| 15 | 32.92 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 5 | 7 |
| 19 | 32.97 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 5 | 6 |
| 24 | 33.00 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 6 | 3 |
| 27 | 33.01 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 35 | 33.04 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 37 | 33.05 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 80 | 33.25 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 98 | 33.29 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 20 | 16 |
| 107 | 33.31 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 109 | 33.31 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 23 | 13 |
| 121 | 33.33 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 158 | 33.37 | temperature | 10.0 | 4320 | > th | dose dependent | sin | 5 | NA |
| 163 | 33.37 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 20 | 16 |
| 174 | 33.40 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 183 | 33.41 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 23 | 13 |
| 206 | 33.44 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 207 | 33.44 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 215 | 33.44 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 235 | 33.46 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 236 | 33.47 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 252 | 33.48 | temperature | 30.0 | 4320 | < th | dose dependent | sin | 5 | NA |
| 265 | 33.49 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 266 | 33.49 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 281 | 33.50 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 9 | 2 |
| 296 | 33.51 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 332 | 33.55 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 386 | 33.59 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 429 | 33.62 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 2 |
| 451 | 33.63 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 5 | 20 |
| 457 | 33.64 | wind | 1.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 468 | 33.64 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 5 | 21 |
| 506 | 33.66 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 516 | 33.66 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 15 |
| 561 | 33.68 | temperature | 10.0 | 4320 | > th | dose dependent | no | NA | NA |
| 588 | 33.69 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 17 | 12 |
| 617 | 33.69 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 621 | 33.70 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 637 | 33.70 | temperature | 30.0 | 4320 | < th | dose dependent | no | NA | NA |
| 656 | 33.71 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 686 | 33.71 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 23 | 23 |
| 731 | 33.73 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 811 | 33.76 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 830 | 33.77 | wind | 1.0 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 867 | 33.78 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 12 |
| 894 | 33.79 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 20 | 4 |
| 917 | 33.80 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 20 | 4 |
| 923 | 33.80 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 10 |
| 947 | 33.81 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 10 | 5 |
| 973 | 33.82 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 980 | 33.82 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 17 | 12 |
| 1000 | 33.83 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 15 | 2 |