BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0249600 Os11g0249600|AK109298
(99 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0249600 Similar to Polygalacturonase C (Fragment) 199 4e-52
Os01g0623600 Similar to Polygalacturonase precursor (EC 3.2... 123 3e-29
Os01g0891100 Similar to Polygalacturonase C (Fragment) 113 3e-26
Os11g0249400 Virulence factor, pectin lyase fold family pro... 108 1e-24
Os06g0611400 Virulence factor, pectin lyase fold family pro... 89 6e-19
Os07g0207600 88 1e-18
Os07g0208100 Similar to Polygalacturonase A (Fragment) 86 4e-18
Os06g0545800 Similar to Exopolygalacturonase precursor (EC ... 83 6e-17
Os06g0545400 Similar to Polygalacturonase (Fragment) 82 6e-17
Os02g0196700 Similar to Polygalacturonase (Fragment) 82 1e-16
Os05g0542900 Virulence factor, pectin lyase fold family pro... 80 3e-16
Os07g0207800 77 2e-15
Os01g0517500 Similar to Polygalacturonase (Fragment) 75 1e-14
Os05g0542800 Virulence factor, pectin lyase fold family pro... 74 2e-14
Os06g0611500 Similar to Polygalacturonase (Fragment) 74 2e-14
Os03g0808000 Similar to Polygalacturonase B (Fragment) 74 3e-14
Os08g0327200 Virulence factor, pectin lyase fold family pro... 73 6e-14
Os01g0172900 72 7e-14
Os06g0509600 70 5e-13
Os02g0130200 Virulence factor, pectin lyase fold family pro... 69 7e-13
Os06g0481400 67 3e-12
Os03g0216800 Similar to Polygalacturonase B (Fragment) 67 4e-12
>Os11g0249600 Similar to Polygalacturonase C (Fragment)
Length = 99
Score = 199 bits (506), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 1 MRDVQNPIVVDQNYCPGNVNCPGQSSGVKISDVEYEGITGTSATAVAVRFDCSGSNPCTG 60
MRDVQNPIVVDQNYCPGNVNCPGQSSGVKISDVEYEGITGTSATAVAVRFDCSGSNPCTG
Sbjct: 1 MRDVQNPIVVDQNYCPGNVNCPGQSSGVKISDVEYEGITGTSATAVAVRFDCSGSNPCTG 60
Query: 61 IRLRNINLTYDGGGGKPARSFCKNAGGSASGVVIPPSCL 99
IRLRNINLTYDGGGGKPARSFCKNAGGSASGVVIPPSCL
Sbjct: 61 IRLRNINLTYDGGGGKPARSFCKNAGGSASGVVIPPSCL 99
>Os01g0623600 Similar to Polygalacturonase precursor (EC 3.2.1.15) (PG)
(Pectinase)
Length = 278
Score = 123 bits (308), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/101 (59%), Positives = 78/101 (77%), Gaps = 4/101 (3%)
Query: 1 MRDVQNPIVVDQNYCP--GNVNCPGQSSGVKISDVEYEGITGTSATAVAVRFDCSGSNPC 58
MRDV NPI++DQ+YCP G CP QSS V+IS V Y I G+SA+ VAV+FDCS S PC
Sbjct: 180 MRDVSNPIIIDQSYCPNDGGQGCPHQSSDVQISGVTYTDIQGSSASQVAVKFDCSASKPC 239
Query: 59 TGIRLRNINLTYDGGGGKPARSFCKNAGGSASGVVIPPSCL 99
+G+ L++I LT+D GGKPA + C++A G+ASGV++PPSCL
Sbjct: 240 SGLGLQDIKLTFD--GGKPAEATCQHADGTASGVLMPPSCL 278
>Os01g0891100 Similar to Polygalacturonase C (Fragment)
Length = 408
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 75/106 (70%), Gaps = 7/106 (6%)
Query: 1 MRDVQNPIVVDQNYCPGNV---NCPGQSSGVKISDVEYEGITGTSATAVAVRFDCSGSNP 57
M V NPI++DQ+YCP G SSG+KIS+VEY + G+SAT VAV FDCS SNP
Sbjct: 303 MAGVGNPIIIDQHYCPDGGCGGAARGSSSGIKISEVEYADVRGSSATPVAVSFDCSRSNP 362
Query: 58 CTGIRLRNINLTYDGGGGKP----ARSFCKNAGGSASGVVIPPSCL 99
C+GIRLR++ LTY G G+ A S C+NA G+ASG+V+PPSCL
Sbjct: 363 CSGIRLRDVRLTYQGKSGRLQAAGAVSSCRNAQGTASGLVVPPSCL 408
>Os11g0249400 Virulence factor, pectin lyase fold family protein
Length = 419
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/113 (53%), Positives = 73/113 (64%), Gaps = 14/113 (12%)
Query: 1 MRDVQNPIVVDQNYCPGNVNCPGQS---------SGVKISDVEYEGITGTSATAVAVRFD 51
MR+V NPI+VDQNYCPGN +CP ++ SG++IS V Y I GTSATA AVRFD
Sbjct: 305 MRNVSNPIIVDQNYCPGNASCPTEARSPETCDLGSGIEISGVSYTDIEGTSATATAVRFD 364
Query: 52 CSGSNPCTGIRLRNINLTY-----DGGGGKPARSFCKNAGGSASGVVIPPSCL 99
CS S PC GI +R++ L Y +PA SFC+NA G A G V PPSCL
Sbjct: 365 CSPSRPCAGIAMRDVRLRYQPPAAAAEEEQPAASFCRNAHGVAFGDVDPPSCL 417
>Os06g0611400 Virulence factor, pectin lyase fold family protein
Length = 419
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 64/103 (62%), Gaps = 5/103 (4%)
Query: 1 MRDVQNPIVVDQNYCPGNVNCPGQS----SGVKISDVEYEGITGTSATAVAVRFDCSGSN 56
MR V+NPI++DQ YCP ++C QS S V+ISDV++ I G SAT VAV+ CS ++
Sbjct: 318 MRRVRNPIIIDQEYCP-YLSCHHQSERRPSVVRISDVKFRNIRGVSATQVAVKLSCSAAS 376
Query: 57 PCTGIRLRNINLTYDGGGGKPARSFCKNAGGSASGVVIPPSCL 99
PC G+ LR+I+L Y G AGG A G ++PP C+
Sbjct: 377 PCRGVELRDIDLRYVRRGVATVSRCANVAGGVAGGTLVPPPCI 419
>Os07g0207600
Length = 422
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Query: 1 MRDVQNPIVVDQNYCPGNVNCPGQSSGVKISDVEYEGITGTSATAVAVRFDCSGSNPCTG 60
M +V NPI++DQNYC C Q+S V++S+V ++ I GTSA+ A++ DCS + PC G
Sbjct: 327 MENVWNPIIIDQNYCDSATPCKEQTSAVQVSNVVFKNIRGTSASKEAIKLDCSRNVPCQG 386
Query: 61 IRLRNINLTYDGGGGKPARSFCKNAGGSASGVVI 94
I L+++ LT GGG A+S C NA SG+ +
Sbjct: 387 ITLKDVKLTIKGGGS-DAKSTCGNAKWKKSGIAL 419
>Os07g0208100 Similar to Polygalacturonase A (Fragment)
Length = 224
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 1 MRDVQNPIVVDQNYCPGNVNCPGQSSGVKISDVEYEGITGTSATAVAVRFDCSGSNPCTG 60
M +V NPI++DQNYC + C Q S V++S++ ++ I GTSA+ A+ CS S PC G
Sbjct: 115 MDNVWNPIIIDQNYCDSSTPCKQQKSAVEVSNLLFKNIRGTSASEEAIVLHCSNSVPCHG 174
Query: 61 IRLRNINLTYDGGGGKPARSFCKNAGGSASGVVI 94
I L N+NLT GG A+S C+NA SGV +
Sbjct: 175 ITLENVNLTVKGGSSN-AKSTCQNAEWKKSGVSV 207
>Os06g0545800 Similar to Exopolygalacturonase precursor (EC 3.2.1.67) (ExoPG)
(Pectinase) (Galacturan 1,4-alpha-galacturonidase)
Length = 252
Score = 82.8 bits (203), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 1 MRDVQNPIVVDQNYCPGNVNCPGQSSGVKISDVEYEGITGTSATAVAVRFDCSGSNPCTG 60
M DV NPI++D YCP + +S V I D+ ++ ITGTS+T AV CS PCTG
Sbjct: 155 MEDVANPIIIDMKYCPNKICTANGNSKVTIKDITFKNITGTSSTPEAVSLLCSDKLPCTG 214
Query: 61 IRLRNINLTYDGGGGKPARSFCKNAGGSASGVVIPPSCL 99
+ L +I + Y G K + CKNA G+A+G + SC
Sbjct: 215 VTLNDIKVEYSGTNNK-TMAVCKNAKGTATGCLKELSCF 252
>Os06g0545400 Similar to Polygalacturonase (Fragment)
Length = 412
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 1 MRDVQNPIVVDQNYCPGNVNCPGQSSGVKISDVEYEGITGTSATAVAVRFDCSGSNPCTG 60
M DV NPI++D YCP + +S V I D+ ++ ITGTS+T AV CS PCTG
Sbjct: 315 MEDVANPIIIDMKYCPNKICTANGNSKVTIKDITFKNITGTSSTPEAVSLLCSDKLPCTG 374
Query: 61 IRLRNINLTYDGGGGKPARSFCKNAGGSASGVVIPPSCL 99
+ L +I + Y G K + CKNA G+A+G + SC
Sbjct: 375 VTLNDIKVEYSGTNNK-TMAVCKNAKGTATGCLKELSCF 412
>Os02g0196700 Similar to Polygalacturonase (Fragment)
Length = 449
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 1 MRDVQNPIVVDQNYCPGNVNCPGQSSGVKISDVEYEGITGTSATAVAVRFDCSGSNPCTG 60
M +V PI++DQ YCP N+ +S V ++D+ ++ I GTSAT AV +C+ + PC G
Sbjct: 352 MDNVSYPIIIDQKYCPNNICSASGTSKVAVTDIVFKNIVGTSATPEAVTLNCANNLPCQG 411
Query: 61 IRLRNINLTYDGGGGKPARSFCKNAGGSASGVVIPPSCL 99
I+L N++L Y G G S CKN G +S V +C+
Sbjct: 412 IQLHNVDLKY-AGQGNTTLSVCKNVAGKSSNVAKELACV 449
>Os05g0542900 Virulence factor, pectin lyase fold family protein
Length = 445
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 65/101 (64%), Gaps = 4/101 (3%)
Query: 1 MRDVQNPIVVDQ-NYCPGNVNCPGQS-SGVKISDVEYEGITGTSATAVAVRFDCSGSNPC 58
M++V+NPIV+DQ N + C ++ S V + ++ Y ITGTSA+ AV F CS + PC
Sbjct: 316 MKNVKNPIVIDQQNSSSNEIPCGSKNGSAVTVGEISYTDITGTSASERAVTFACSEAAPC 375
Query: 59 TGIRLRNINLTYDGGGGKPARSFCKNAGGSASGVVIPPSCL 99
+ + L N+N+T GG+ A ++C +A G + GVV+P SCL
Sbjct: 376 SKLSLENVNITM--AGGQNASAYCHHAFGKSVGVVVPDSCL 414
>Os07g0207800
Length = 393
Score = 77.0 bits (188), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 48/73 (65%)
Query: 1 MRDVQNPIVVDQNYCPGNVNCPGQSSGVKISDVEYEGITGTSATAVAVRFDCSGSNPCTG 60
M +V NPI++DQNYC + C Q S V++S+V ++ I GTSA+ A+ CS S PC G
Sbjct: 305 MDNVWNPIIIDQNYCDSSTPCKQQKSAVEVSNVLFKNIRGTSASEEAIMLHCSSSVPCHG 364
Query: 61 IRLRNINLTYDGG 73
I L N+NLT GG
Sbjct: 365 ITLENVNLTVKGG 377
>Os01g0517500 Similar to Polygalacturonase (Fragment)
Length = 407
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 1 MRDVQNPIVVDQNYCPGNVNCPGQ--SSGVKISDVEYEGITGTSATAVAVRFDCSGSNPC 58
M V NP++VDQ YCP +CP + S V I +V + ITGTS T AV CS PC
Sbjct: 309 MDGVANPVIVDQKYCPEK-DCPEKKGSKTVTIKNVTFRNITGTSNTPEAVSLLCSDQLPC 367
Query: 59 TGIRLRNINLTYDGGGGKPARSFCKNAGGSASGVVIPPSCL 99
+G+ L ++NL YDG K + C NA G + G + +CL
Sbjct: 368 SGMELLDVNLKYDGKDNK-TMAVCTNAKGISKGSLQALACL 407
>Os05g0542800 Virulence factor, pectin lyase fold family protein
Length = 408
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%)
Query: 1 MRDVQNPIVVDQNYCPGNVNCPGQSSGVKISDVEYEGITGTSATAVAVRFDCSGSNPCTG 60
M++V NPI++DQ YC C Q+ V++ +E+ GI GTSAT A++ CS + PC
Sbjct: 311 MKNVSNPIIIDQYYCDQPTPCANQTQAVEVRKIEFAGIRGTSATEQAIKLACSDAVPCRD 370
Query: 61 IRLRNINLTYDG 72
+ LRN+NLT G
Sbjct: 371 LELRNVNLTMVG 382
>Os06g0611500 Similar to Polygalacturonase (Fragment)
Length = 425
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 1 MRDVQNPIVVDQNYCPGNVNCPGQSSGVKISDVEYEGITGTSATAVAVRFDCSGSNPCTG 60
M V NPI++DQ YCP ++ S V + DV + ITG+S T V+ CSG PC+G
Sbjct: 328 MDHVDNPIIIDQKYCPNSICTSKGDSKVSVRDVTFRNITGSSNTPAVVQLLCSGKLPCSG 387
Query: 61 IRLRNINLTYDGGGGKPARSFCKNAGGSASGVVIPPSCL 99
+ ++++ + Y GG K + C +A G ++G + +CL
Sbjct: 388 VAMQDVRVLY-GGSDKKTTAVCDHALGKSTGCLKELACL 425
>Os03g0808000 Similar to Polygalacturonase B (Fragment)
Length = 444
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 1 MRDVQNPIVVDQNYCPGNVNCPGQS-SGVKISDVEYEGITGTSATAVAVRFDCSGSNPCT 59
M V+NPI++DQNYC C Q S V+IS+V ++ I GT+ + A+ +CS + PC
Sbjct: 343 MNSVKNPIIIDQNYCDSAKKCETQEGSAVEISNVVFKNIAGTTISKSAITLNCSKNYPCY 402
Query: 60 GIRLRNINLTYDGGGGKPARSFCKNAGGSASGVVIPPSC 98
I L++INL G S C+NA SG V+P C
Sbjct: 403 DISLQDINLEMVDDNGATG-STCQNAKWRKSGTVVPQPC 440
>Os08g0327200 Virulence factor, pectin lyase fold family protein
Length = 407
Score = 72.8 bits (177), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 57/99 (57%), Gaps = 6/99 (6%)
Query: 1 MRDVQNPIVVDQNYCPGNVNCPGQS-SGVKISDVEYEGITGTSATAVAVRFDCSGSNPCT 59
M DVQNPI++DQ YCP NC + SGV I DV+++ I GT+ T VAV C PC
Sbjct: 313 MNDVQNPIIIDQKYCP-YYNCEHKFVSGVTIKDVQFKNIKGTATTQVAVLLKCGV--PCQ 369
Query: 60 GIRLRNINLTYDGGGGKPARSFCKNAGGSASGVVIPPSC 98
G+ L++++L Y G G ++ C+N +G P C
Sbjct: 370 GVVLQDVDLRYKGNGVSSSK--CENVRAKYAGFQNPKPC 406
>Os01g0172900
Length = 457
Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 1 MRDVQNPIVVDQNYCPGNVNCPGQSSGVKISDVEYEGITGTSATAVAVRFDCSGSNPCTG 60
M V++PI++DQ YCP NCP + GV ISD + I GTS+ A++ CS S C G
Sbjct: 360 MTAVESPIIIDQFYCPQG-NCPLKDGGVAISDARFINIRGTSSEQEAIKILCSQSVHCQG 418
Query: 61 IRLRNINLTYDGGGGKPARSFCKNAGGSASGVVIP 95
I L NINL+++ A + NA G+ G V+P
Sbjct: 419 IYLSNINLSWENHTAL-ANATILNANGTVEGSVVP 452
>Os06g0509600
Length = 413
Score = 69.7 bits (169), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Query: 1 MRDVQNPIVVDQNYCPGNVNCP--GQSSGVKISDVEYEGITGTSATAVAVRFDCSGSNPC 58
M +V NPI++DQ+YCP + +C + S V+ISDV YE I GTS++ VAV+ CS PC
Sbjct: 296 MSNVSNPIIIDQHYCP-HAHCSDIAKPSLVQISDVTYERIEGTSSSRVAVQLLCSEDRPC 354
Query: 59 TGIRLRNINLT 69
+G+R +NL+
Sbjct: 355 SGVRFDRVNLS 365
>Os02g0130200 Virulence factor, pectin lyase fold family protein
Length = 508
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 4 VQNPIVVDQNYCPGNVNCPGQSSGVKISDVEYEGITGTSATAVAVRFDCSGSNPCTGIRL 63
V +PIV+DQ YC C ++S V++S V + ITGT+ A A+R CS + PC GI L
Sbjct: 384 VDHPIVIDQFYCDATRPCRNRTSNVRVSGVVFRNITGTARRAEAIRLACSDAVPCVGIVL 443
Query: 64 RNINLTYDGGGGKPARSFCKNAGGSASGVVIPPS-CL 99
+I+L + GGG+ ++ C A G G V P + CL
Sbjct: 444 SDIDLRREDGGGE-VQTVCNCAMGFDDGRVSPAADCL 479
>Os06g0481400
Length = 477
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 4 VQNPIVVDQNYCPGNVNCPGQSSGVKISDVEYEGITGTSATAVAVRFDCSGSNPCTGIRL 63
V+ PIV+DQ YC + C Q++ V +S V Y GITGT T V CS + PC G+RL
Sbjct: 376 VKTPIVIDQYYCD-HATCANQTAAVAVSGVAYSGITGTY-TQRPVYLACSDAAPCAGLRL 433
Query: 64 RNINL--TYDGGGGKPARSFCKNAGGSASGVVIPP-SCL 99
+I L +GG G+ FC A G V+PP CL
Sbjct: 434 EDIKLAPVKEGGYGRLYGPFCWKAYGDEVRPVVPPVDCL 472
>Os03g0216800 Similar to Polygalacturonase B (Fragment)
Length = 438
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 1 MRDVQNPIVVDQNYCPGNVNCPGQSSGVKISDVEYEGITGTSATAVAVRFDCSGSNPCTG 60
M +V NP+++DQNYC C Q S V I+++ Y I GTS++ VA+ F CS S C G
Sbjct: 341 MHNVTNPVIIDQNYCDSMTPCHEQGSAVAINNIRYRNIRGTSSSKVAINFVCSNSVHCDG 400
Query: 61 IRLRNINLTYDG 72
I +++++L +G
Sbjct: 401 IVMQDVSLVGEG 412
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.136 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,120,176
Number of extensions: 167793
Number of successful extensions: 624
Number of sequences better than 1.0e-10: 23
Number of HSP's gapped: 605
Number of HSP's successfully gapped: 23
Length of query: 99
Length of database: 17,035,801
Length adjustment: 68
Effective length of query: 31
Effective length of database: 13,485,249
Effective search space: 418042719
Effective search space used: 418042719
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)