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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0208100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Polygalacturonase A (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.33 (0.0353) R2 : 0.485
β1 : -1.45 (0.129) R2dD : 0.148 R2D : 0.167
β2 : 1.51 (0.0911) R2dC : 0.311 R2C : 0.308
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.227 (0.0752) R2dN8 : 0.0138 R2N8 : 0.0217
σ : 0.663
deviance : 200.18
__
_____
C
peak time of C : 19.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
178.95 0.629 4 -2.77 1.51 -11.1 -1.1 -20.5 0.0904 19.2 15 4796 -- --
191.4 0.649 4.33 -1.58 1.51 -1.11 -1.04 -- 0.202 19.2 15.89 2206 -- --
182.17 0.629 4 -2.74 1.51 -11.1 -- -20.4 0.0918 19.2 15 4828 -- --
182.55 0.629 4.34 -1.91 1.47 -1.3 -- -- 0.0446 19.3 16 6348 -- --
301.93 0.809 3.99 -2.7 -- -11.1 -- -20.3 0.066 -- 15 4956 -- --
197.22 0.658 4.32 -1.47 1.51 -- -1.06 -- 0.229 19.2 -- -- -- --
200.18 0.663 4.33 -1.45 1.51 -- -- -- 0.227 19.2 -- -- -- --
300.89 0.808 4.33 -2.05 -- -1.47 -- -- 0.0474 -- 15.7 6406 -- --
255.1 0.744 4.29 -- 1.52 -0.404 -- -- 0.383 19.1 12.8 5551 -- --
320.2 0.836 4.29 -1.48 -- -- -- -- 0.201 -- -- -- -- --
255.66 0.748 4.29 -- 1.52 -- -- -- 0.389 19.1 -- -- -- --
376.84 0.904 4.26 -- -- -0.588 -- -- 0.36 -- 12.28 3509 -- --
377.86 0.907 4.25 -- -- -- -- -- 0.365 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 168.61 temperature 15 10 > th dose dependent rect. 9 19
3 168.73 temperature 10 90 > th dose dependent rect. 8 19
6 169.29 temperature 20 90 > th dose independent rect. 9 18
9 169.64 temperature 20 10 > th dose independent rect. 9 19
12 169.94 temperature 20 90 > th dose independent rect. 20 19
16 170.63 temperature 15 90 > th dose dependent rect. 20 19
57 172.97 temperature 20 270 > th dose independent rect. 18 20
61 173.13 temperature 10 270 > th dose dependent rect. 17 22
66 173.22 temperature 10 43200 > th dose independent rect. 10 6
78 173.48 temperature 20 30 > th dose independent rect. 20 8
98 173.79 wind 9 14400 < th dose independent rect. 2 2
111 174.19 wind 3 43200 < th dose independent rect. 24 2
117 174.41 wind 3 43200 > th dose independent rect. 24 2
145 174.91 wind 7 14400 > th dose dependent rect. 22 15
169 175.29 temperature 15 90 > th dose dependent rect. 8 7
174 175.36 radiation 10 4320 > th dose independent rect. 5 2
176 175.36 temperature 10 43200 > th dose independent rect. 16 4
191 175.42 temperature 20 270 > th dose independent rect. 18 8
213 175.69 atmosphere 1010 30 < th dose independent rect. 9 19
218 175.73 wind 7 14400 > th dose independent rect. 23 14
231 175.82 wind 7 14400 < th dose independent rect. 23 14
249 175.95 temperature 30 90 < th dose dependent rect. 3 20
251 175.97 temperature 20 4320 < th dose dependent rect. 20 1
252 175.98 wind 1 43200 > th dose dependent rect. 1 2
284 176.34 temperature 15 10 > th dose dependent rect. 20 8
299 176.50 temperature 10 43200 > th dose independent rect. 14 6
303 176.57 humidity 70 14400 < th dose independent rect. 21 1
313 176.60 humidity 50 14400 > th dose independent rect. 19 10
314 176.60 wind 5 43200 < th dose dependent rect. 1 2
339 176.74 radiation 10 4320 > th dose dependent rect. 5 2
360 176.81 wind 7 43200 < th dose dependent rect. 23 5
387 177.03 temperature 20 4320 < th dose independent rect. 18 3
389 177.04 temperature 20 4320 < th dose independent rect. 16 5
399 177.07 wind 7 14400 > th dose dependent rect. 5 6
414 177.15 atmosphere 1010 30 < th dose independent rect. 9 6
422 177.19 wind 7 14400 > th dose dependent rect. 7 4
442 177.27 humidity 50 14400 > th dose dependent rect. 5 1
450 177.29 temperature 30 90 < th dose dependent rect. 3 22
456 177.31 temperature 30 90 < th dose dependent rect. 3 17
468 177.35 wind 7 14400 > th dose dependent rect. 9 2
476 177.37 humidity 70 14400 < th dose dependent rect. 20 2
499 177.43 temperature 20 4320 < th dose independent rect. 19 1
519 177.51 wind 9 14400 < th dose independent rect. 23 5
535 177.55 wind 7 14400 > th dose independent rect. 7 6
556 177.61 temperature 20 4320 > th dose independent rect. 18 1
575 177.68 temperature 15 30 > th dose dependent rect. 1 14
576 177.69 temperature 20 4320 > th dose independent rect. 16 5
595 177.74 temperature 10 270 > th dose dependent rect. 18 9
600 177.75 humidity 50 43200 < th dose dependent rect. 8 1
682 178.03 wind 9 14400 > th dose independent rect. 20 1
707 178.10 wind 7 14400 > th dose independent rect. 9 2
733 178.18 wind 9 14400 > th dose dependent rect. 19 2
736 178.19 humidity 80 14400 > th dose independent rect. 10 1
804 178.31 temperature 20 4320 < th dose dependent sin 17 NA
825 178.36 wind 7 14400 > th dose dependent rect. 6 1
836 178.39 wind 1 43200 < th dose independent rect. 10 1
841 178.40 wind 7 14400 > th dose dependent sin 6 NA
865 178.45 temperature 30 10 < th dose dependent rect. 4 16
866 178.46 wind 7 14400 < th dose independent rect. 9 2
898 178.53 atmosphere 1010 30 < th dose independent rect. 20 19
902 178.54 humidity 50 43200 < th dose independent rect. 6 3
911 178.55 humidity 80 43200 < th dose dependent rect. 23 8
913 178.56 wind 7 14400 > th dose independent rect. 6 1
917 178.56 radiation 20 4320 < th dose independent rect. 21 9
924 178.57 wind 1 43200 < th dose dependent rect. 10 1
943 178.60 wind 9 14400 < th dose independent rect. 19 2
945 178.60 humidity 80 14400 > th dose dependent rect. 10 1
952 178.61 humidity 60 14400 < th dose independent rect. 19 13
954 178.62 wind 1 43200 > th dose independent rect. 7 4
962 178.63 humidity 50 43200 > th dose dependent rect. 22 12
964 178.64 humidity 60 14400 > th dose independent rect. 19 13
988 178.67 humidity 50 43200 > th dose independent rect. 6 3
998 178.68 temperature 20 90 > th dose independent rect. 8 7