Os05g0542900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
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Os05g0542900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Virulence factor, pectin lyase fold family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 141.83 | 0.56 | 10 | 0.212 | 4.1 | 2.78 | 0.346 | 0.413 | 0.213 | 18.1 | 28.76 | 6 | 0.711 | -- |
| 141.7 | 0.554 | 10 | 0.248 | 4.1 | 2.8 | 0.0896 | -- | 0.221 | 18 | 28.8 | 3 | 0.717 | -- |
| 141.87 | 0.559 | 10 | 0.235 | 4.1 | 2.82 | -- | 0.124 | 0.217 | 18 | 28.76 | 6 | 0.711 | -- |
| 141.72 | 0.554 | 10 | 0.249 | 4.11 | 2.81 | -- | -- | 0.224 | 18 | 28.8 | 3 | 0.714 | -- |
| 636.39 | 1.18 | 10.1 | -0.327 | -- | -1.51 | -- | -0.141 | -0.407 | -- | 28.76 | 6 | 0.711 | -- |
| 200.32 | 0.664 | 10.1 | -0.108 | 3.03 | -- | 0.315 | -- | -0.167 | 19 | -- | -- | -- | -- |
| 200.57 | 0.663 | 10.1 | -0.114 | 3.03 | -- | -- | -- | -0.166 | 18.9 | -- | -- | -- | -- |
| 204.9 | 0.667 | 10 | -0.0991 | -- | -3.07 | -- | -- | -0.181 | -- | 222.2 | 491 | 3.15 | -- |
| 143.32 | 0.558 | 10 | -- | 4.11 | 2.79 | -- | -- | 0.2 | 18 | 28.82 | 3 | 0.748 | -- |
| 682.57 | 1.22 | 10 | -0.176 | -- | -- | -- | -- | -0.223 | -- | -- | -- | -- | -- |
| 200.91 | 0.663 | 10.1 | -- | 3.03 | -- | -- | -- | -0.154 | 18.9 | -- | -- | -- | -- |
| 201.57 | 0.661 | 10 | -- | -- | -2.98 | -- | -- | -0.146 | -- | 1717 | 484 | 3.07 | -- |
| 683.39 | 1.22 | 10 | -- | -- | -- | -- | -- | -0.203 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 129.56 | temperature | 20.0 | 270 | > th | dose independent | rect. | 16 | 18 |
| 3 | 131.08 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 17 |
| 5 | 132.79 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 9 |
| 16 | 136.18 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 18 | 18 |
| 18 | 137.02 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 16 |
| 35 | 140.10 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 8 |
| 41 | 141.02 | temperature | 20.0 | 30 | > th | dose independent | rect. | 18 | 18 |
| 48 | 141.64 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 4 | 8 |
| 64 | 143.06 | temperature | 30.0 | 10 | < th | dose dependent | sin | 7 | NA |
| 79 | 144.51 | temperature | 15.0 | 10 | > th | dose dependent | sin | 7 | NA |
| 84 | 144.74 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 16 |
| 129 | 146.93 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 23 | 9 |
| 145 | 147.88 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 17 |
| 153 | 148.17 | wind | 1.0 | 270 | > th | dose independent | rect. | 23 | 16 |
| 160 | 148.44 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 17 |
| 209 | 150.23 | wind | 1.0 | 270 | > th | dose independent | rect. | 21 | 9 |
| 253 | 151.66 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 17 |
| 292 | 152.77 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 15 |
| 302 | 153.04 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 18 |
| 304 | 153.06 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 6 |
| 333 | 153.96 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 4 |
| 335 | 154.04 | humidity | 50.0 | 270 | > th | dose independent | rect. | 10 | 6 |
| 344 | 154.10 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 18 |
| 347 | 154.19 | temperature | 10.0 | 270 | > th | dose independent | rect. | 10 | 6 |
| 348 | 154.19 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 10 | 6 |
| 357 | 154.30 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 10 | 6 |
| 358 | 154.30 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 10 | 6 |
| 359 | 154.33 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 24 | 12 |
| 368 | 154.45 | wind | 1.0 | 270 | > th | dose independent | rect. | 10 | 20 |
| 376 | 154.52 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 18 |
| 377 | 154.52 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 18 |
| 381 | 154.63 | wind | 9.0 | 270 | < th | dose independent | rect. | 10 | 6 |
| 391 | 154.81 | wind | 1.0 | 270 | > th | dose independent | rect. | 10 | 6 |
| 396 | 154.91 | radiation | 1.0 | 270 | > th | dose independent | rect. | 5 | 5 |
| 424 | 155.26 | humidity | 50.0 | 270 | > th | dose independent | rect. | 11 | 4 |
| 434 | 155.41 | wind | 1.0 | 30 | > th | dose independent | rect. | 12 | 20 |
| 442 | 155.60 | temperature | 20.0 | 270 | > th | dose independent | rect. | 11 | 4 |
| 443 | 155.60 | wind | 9.0 | 270 | < th | dose dependent | rect. | 16 | 18 |
| 451 | 155.68 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 20 |
| 457 | 155.71 | radiation | 1.0 | 270 | > th | dose independent | sin | 10 | NA |
| 474 | 155.91 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 20 |
| 483 | 156.02 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 4 |
| 484 | 156.02 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 4 |
| 490 | 156.06 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 4 |
| 491 | 156.06 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 4 |
| 498 | 156.12 | radiation | 1.0 | 270 | < th | dose independent | sin | 10 | NA |
| 503 | 156.22 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 12 | 6 |
| 511 | 156.33 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 24 | 11 |
| 512 | 156.34 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 4 |
| 523 | 156.45 | temperature | 20.0 | 10 | > th | dose independent | rect. | 12 | 6 |
| 524 | 156.45 | temperature | 20.0 | 270 | > th | dose independent | rect. | 2 | 21 |
| 527 | 156.48 | temperature | 20.0 | 270 | > th | dose independent | rect. | 10 | 6 |
| 530 | 156.54 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 10 | 6 |
| 532 | 156.55 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 20 |
| 533 | 156.55 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 20 |
| 540 | 156.68 | radiation | 1.0 | 270 | < th | dose dependent | sin | 9 | NA |
| 543 | 156.72 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 11 | 4 |
| 556 | 156.87 | wind | 1.0 | 270 | > th | dose independent | rect. | 11 | 4 |
| 557 | 156.88 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 23 | 9 |
| 559 | 156.90 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 18 |
| 564 | 156.94 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 593 | 157.29 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 9 |
| 595 | 157.32 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 9 |
| 596 | 157.32 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 9 |
| 597 | 157.32 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 9 |
| 600 | 157.32 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 9 |
| 601 | 157.32 | radiation | 20.0 | 270 | < th | dose independent | rect. | 21 | 9 |
| 607 | 157.39 | wind | 1.0 | 270 | > th | dose independent | rect. | 9 | 22 |
| 615 | 157.48 | humidity | 90.0 | 10 | < th | dose independent | rect. | 7 | 5 |
| 620 | 157.54 | radiation | 1.0 | 270 | > th | dose independent | rect. | 10 | 6 |
| 622 | 157.58 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 17 |
| 628 | 157.65 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 12 | 1 |
| 630 | 157.70 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 15 |
| 636 | 157.79 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 15 |
| 641 | 157.85 | temperature | 15.0 | 270 | > th | dose independent | rect. | 15 | 8 |
| 662 | 158.15 | wind | 1.0 | 270 | > th | dose independent | rect. | 15 | 8 |
| 666 | 158.21 | radiation | 1.0 | 270 | > th | dose independent | rect. | 11 | 4 |
| 674 | 158.28 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 16 |
| 683 | 158.34 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 16 |
| 689 | 158.43 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 8 |
| 708 | 158.62 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 8 |
| 713 | 158.67 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 8 |
| 738 | 158.97 | temperature | 15.0 | 90 | > th | dose independent | rect. | 8 | 15 |
| 744 | 159.03 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 15 |
| 746 | 159.03 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 15 |
| 748 | 159.06 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 16 |
| 757 | 159.22 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 16 |
| 765 | 159.29 | radiation | 1.0 | 30 | > th | dose independent | rect. | 12 | 6 |
| 767 | 159.30 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 9 |
| 768 | 159.30 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 9 |
| 797 | 159.57 | wind | 9.0 | 10 | < th | dose independent | rect. | 18 | 18 |
| 815 | 159.70 | temperature | 20.0 | 10 | > th | dose independent | rect. | 8 | 4 |
| 825 | 159.79 | wind | 9.0 | 10 | < th | dose independent | rect. | 12 | 6 |
| 830 | 159.84 | radiation | 20.0 | 90 | < th | dose independent | rect. | 23 | 9 |
| 839 | 159.90 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 16 |
| 885 | 160.18 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 12 | 6 |
| 887 | 160.18 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 12 | 6 |
| 900 | 160.32 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 15 |
| 901 | 160.32 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 902 | 160.33 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 18 | 18 |
| 903 | 160.33 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 18 | 18 |
| 920 | 160.38 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 18 | 18 |
| 921 | 160.39 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 8 |
| 922 | 160.39 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 923 | 160.43 | temperature | 10.0 | 10 | > th | dose independent | rect. | 12 | 6 |
| 925 | 160.43 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 12 | 6 |
| 928 | 160.43 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 7 |