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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0542800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Virulence factor, pectin lyase fold family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.41 (0.0414) R2 : 0.846
β1 : -3.68 (0.156) R2dD : 0.212 R2D : 0.13
β2 : 4.61 (0.102) R2dC : 0.766 R2C : 0.648
β3 : -2.2 (0.224) R2dE : 0.0403 R2E : -0.114
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.492 (0.0915) R2dN8 : 0.0144 R2N8 : -0.0211
σ : 0.764
deviance : 269.12
__
_____
C
peak time of C : 0.433
E
wheather : temperature
threshold : 22.8
memory length : 32
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
266.96 0.768 6.41 -3.6 4.63 -2.36 -0.259 -0.977 -0.483 0.442 22.8 40 -- --
268.28 0.763 6.4 -3.62 4.61 -2.17 -0.471 -- -0.45 0.447 22.8 32 -- --
267.19 0.761 6.41 -3.57 4.64 -2.4 -- -1.19 -0.482 0.442 22.77 39 -- --
269.12 0.764 6.41 -3.68 4.61 -2.2 -- -- -0.492 0.433 22.8 32 -- --
1349.2 1.71 6.34 -4.29 -- -3.95 -- -1.88 -0.282 -- 22.12 899 -- --
324.84 0.845 6.35 -3.26 4.32 -- -0.45 -- -0.225 0.398 -- -- -- --
325.71 0.845 6.35 -3.24 4.32 -- -- -- -0.223 0.396 -- -- -- --
1230.71 1.63 6.46 -4.27 -- -4.06 -- -- -1.02 -- 28.7 909 -- --
596.35 1.14 6.29 -- 4.37 -0.724 -- -- 0.0688 0.368 22.5 11 -- --
1496.97 1.81 6.27 -3.1 -- -- -- -- -0.153 -- -- -- -- --
602.8 1.15 6.27 -- 4.27 -- -- -- 0.138 0.357 -- -- -- --
1459.33 1.79 6.05 -- -- 3.63 -- -- 0.797 -- 29.4 898 -- --
1749.82 1.95 6.19 -- -- -- -- -- 0.19 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 260.35 humidity 80 14400 > th dose dependent rect. 24 1
2 261.02 humidity 50 14400 > th dose dependent rect. 24 2
5 261.96 humidity 50 14400 > th dose dependent rect. 23 4
17 262.76 humidity 80 14400 > th dose dependent rect. 23 8
33 263.75 atmosphere 995 43200 < th dose dependent rect. 14 1
41 264.10 temperature 20 1440 > th dose independent rect. 21 4
43 264.13 temperature 20 1440 > th dose independent rect. 20 6
48 264.28 temperature 20 1440 > th dose independent rect. 18 10
74 264.85 temperature 20 1440 < th dose independent rect. 20 7
75 264.96 temperature 20 1440 < th dose independent rect. 21 5
79 265.03 atmosphere 995 43200 < th dose independent rect. 14 1
85 265.13 temperature 20 1440 < th dose independent rect. 18 10
93 265.31 temperature 20 1440 > th dose independent sin 13 NA
117 265.86 temperature 20 1440 > th dose independent rect. 15 16
123 265.91 temperature 20 270 < th dose independent rect. 14 19
124 265.91 temperature 20 270 < th dose independent rect. 12 21
125 265.91 temperature 10 43200 < th dose dependent rect. 3 1
130 266.00 temperature 20 1440 < th dose independent rect. 17 13
138 266.07 temperature 20 1440 < th dose independent sin 13 NA
158 266.37 temperature 20 1440 < th dose independent rect. 15 15
174 266.57 temperature 20 1440 > th dose independent rect. 20 11
178 266.61 humidity 90 14400 > th dose dependent rect. 4 4
219 266.94 temperature 20 270 > th dose independent rect. 6 23
220 266.95 atmosphere 995 43200 > th dose independent rect. 12 2
263 267.29 humidity 90 14400 > th dose dependent rect. 3 6
281 267.45 humidity 90 14400 > th dose independent rect. 18 11
288 267.53 humidity 70 14400 < th dose independent rect. 21 10
292 267.55 humidity 90 14400 > th dose independent rect. 21 11
303 267.62 atmosphere 995 43200 > th dose independent rect. 9 5
313 267.67 temperature 20 1440 > th dose independent rect. 20 15
321 267.72 temperature 20 1440 > th dose independent rect. 20 19
380 268.06 temperature 20 1440 < th dose independent rect. 20 15
384 268.07 temperature 10 43200 > th dose independent rect. 3 2
401 268.12 temperature 25 270 < th dose dependent rect. 14 19
402 268.12 temperature 25 90 < th dose dependent rect. 14 21
403 268.13 humidity 90 14400 > th dose independent rect. 20 8
409 268.15 atmosphere 995 43200 < th dose dependent rect. 9 7
413 268.17 temperature 20 1440 < th dose independent rect. 20 19
437 268.27 temperature 20 1440 > th dose independent rect. 18 21
457 268.33 temperature 10 43200 < th dose independent rect. 3 2
537 268.69 humidity 90 14400 > th dose dependent rect. 5 2
560 268.78 humidity 90 14400 > th dose independent sin 10 NA
590 268.88 temperature 20 1440 > th dose independent rect. 20 23
621 269.00 humidity 90 14400 < th dose independent rect. 21 6
636 269.06 humidity 90 14400 > th dose independent rect. 24 9
705 269.31 temperature 20 1440 > th dose independent rect. 5 23
706 269.32 wind 9 43200 > th dose dependent rect. 18 15
724 269.39 temperature 20 90 < th dose independent rect. 3 23
736 269.43 humidity 90 14400 < th dose independent rect. 18 11
740 269.44 temperature 20 90 > th dose independent no NA NA
762 269.49 temperature 20 270 > th dose independent rect. 15 23
779 269.60 temperature 20 1440 > th dose independent no NA NA
798 269.68 humidity 90 14400 < th dose independent rect. 21 11
801 269.70 temperature 25 90 < th dose dependent rect. 17 18
868 269.91 humidity 90 14400 > th dose dependent rect. 16 16
905 270.07 temperature 20 1440 < th dose independent rect. 5 23
927 270.12 temperature 20 90 < th dose independent rect. 17 23
969 270.27 temperature 20 1440 < th dose independent no NA NA
972 270.28 temperature 20 90 < th dose independent no NA NA
979 270.30 humidity 90 14400 > th dose dependent sin 7 NA