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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0196700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Polygalacturonase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.87 (0.0299) R2 : 0.151
β1 : 0.431 (0.118) R2dD : 0.0318 R2D : -0.0272
β2 : -- (--) R2dC : -- R2C : --
β3 : -5.61 (1.18) R2dE : 0.474 R2E : -0.831
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 60.5 (8.91) R2dD*E : 0.986 R2D*E : -0.344
γ1 : 0.0317 (0.062) R2dN8 : 0.000651 R2N8 : -0.00748
σ : 0.543
deviance : 135.73
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.8
memory length : 29
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 21
open length of G : 0.637

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
131.97 0.54 2.87 0.414 0.227 -5.69 -0.466 60.4 0.0306 21.3 24.8 30 21 0.683
182.04 0.628 2.89 0.284 0.348 -5.29 0.304 -- -0.00937 20.8 25.8 46 22.5 0.7
132.72 0.537 2.87 0.421 0.226 -5.64 -- 59.7 0.0293 21.5 24.8 29 21 0.678
154.65 0.579 2.93 0.103 0.285 -0.312 -- -- 0.0191 21.6 26.57 37 24 1.92
135.73 0.543 2.87 0.431 -- -5.61 -- 60.5 0.0317 -- 24.8 29 21 0.637
154.6 0.583 2.93 0.0896 0.284 -- -0.248 -- 0.0181 21.5 -- -- -- --
154.83 0.583 2.93 0.0984 0.284 -- -- -- 0.0182 21.6 -- -- -- --
157.21 0.584 2.93 0.0914 -- 0.634 -- -- -0.00631 -- 20.63 120 0.0151 2
153.99 0.581 2.93 -- 0.31 -0.64 -- -- 0.0188 21.9 24.63 3 24 1.55
159.61 0.59 2.92 0.101 -- -- -- -- 0.0176 -- -- -- -- --
155.08 0.583 2.93 -- 0.285 -- -- -- 0.00728 21.6 -- -- -- --
155.76 0.581 2.93 -- -- 1.01 -- -- -0.00036 -- 21.36 45 1.03 1.5
159.87 0.59 2.92 -- -- -- -- -- 0.00646 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 134.29 temperature 25.0 30 > th dose dependent rect. 21 1
2 134.89 humidity 80.0 30 < th dose dependent rect. 18 2
19 137.35 humidity 80.0 30 < th dose dependent rect. 18 10
49 138.38 atmosphere 1000.0 10 < th dose independent rect. 21 1
56 138.38 atmosphere 1000.0 10 < th dose dependent rect. 21 1
83 139.20 temperature 25.0 30 > th dose independent rect. 21 1
94 141.46 radiation 20.0 270 > th dose dependent rect. 16 1
133 142.42 humidity 60.0 270 < th dose independent rect. 16 1
134 142.50 atmosphere 1005.0 90 < th dose independent rect. 18 1
138 142.70 humidity 60.0 270 < th dose independent rect. 16 4
169 143.46 humidity 60.0 270 < th dose dependent rect. 16 1
174 143.90 humidity 60.0 270 < th dose dependent rect. 16 4
199 144.23 humidity 80.0 10 < th dose independent rect. 19 1
201 144.39 humidity 80.0 90 < th dose independent rect. 18 2
250 146.47 atmosphere 1000.0 270 < th dose dependent rect. 18 4
281 147.34 atmosphere 1005.0 270 < th dose dependent rect. 16 1
293 147.55 wind 3.0 10 > th dose independent rect. 21 1
360 148.15 atmosphere 1010.0 90 < th dose dependent rect. 18 1
365 148.18 temperature 25.0 10 > th dose dependent rect. 21 9
386 148.32 temperature 30.0 270 > th dose independent rect. 18 1
425 148.61 precipitation 0.1 90 > th dose independent rect. 21 2
427 148.61 precipitation 0.1 90 > th dose dependent rect. 21 2
511 149.27 wind 3.0 90 > th dose dependent rect. 21 1
531 149.37 wind 9.0 270 > th dose dependent rect. 18 1
545 149.45 radiation 20.0 270 > th dose independent rect. 16 1
563 149.47 wind 3.0 90 > th dose independent rect. 21 1
571 149.49 temperature 25.0 90 < th dose dependent rect. 18 3
580 149.54 temperature 25.0 90 < th dose independent rect. 18 3
582 149.57 temperature 25.0 10 < th dose independent rect. 20 1
588 149.59 temperature 25.0 90 < th dose independent rect. 18 1
589 149.59 atmosphere 1005.0 270 < th dose independent rect. 16 1
594 149.60 wind 1.0 10 > th dose dependent rect. 20 3
615 149.70 temperature 15.0 10 > th dose independent rect. 20 22
652 149.86 temperature 15.0 1440 > th dose independent rect. 22 1
667 149.93 wind 5.0 10 < th dose independent rect. 18 2
670 149.94 precipitation 0.1 10 < th dose independent rect. 22 23
674 149.94 precipitation 0.1 10 < th dose dependent rect. 22 23
679 149.97 temperature 20.0 90 > th dose dependent rect. 1 1
688 150.00 temperature 25.0 10 < th dose dependent rect. 20 1
793 150.22 humidity 80.0 10 < th dose independent rect. 18 6
814 150.27 wind 9.0 270 > th dose independent rect. 18 1