Os06g0545800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Exopolygalacturonase precursor (EC 3.2.1.67) (ExoPG) (Pectinase) (Galacturan 1,4-alpha-galacturonidase).
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Os06g0545800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Exopolygalacturonase precursor (EC 3.2.1.67) (ExoPG) (Pectinase) (Galacturan 1,4-alpha-galacturonidase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.51 | 0.389 | 3.37 | 0.238 | 0.226 | -0.307 | 0.0533 | -1.35 | -0.0218 | 6.73 | 68.31 | 4861 | -- | -- |
| 70.88 | 0.392 | 3.36 | 0.0955 | 0.219 | -0.326 | -0.0539 | -- | -0.0825 | 6.81 | 71.87 | 4888 | -- | -- |
| 68.51 | 0.386 | 3.37 | 0.237 | 0.226 | -0.309 | -- | -1.34 | -0.0233 | 6.69 | 68.14 | 4867 | -- | -- |
| 70.87 | 0.392 | 3.36 | 0.0711 | 0.233 | -0.341 | -- | -- | -0.0805 | 6.73 | 69.93 | 4906 | -- | -- |
| 70.22 | 0.39 | 3.36 | 0.246 | -- | -0.222 | -- | -1.31 | 0.0153 | -- | 68 | 5793 | -- | -- |
| 72.33 | 0.399 | 3.33 | 0.0371 | 0.182 | -- | -0.157 | -- | 0.0544 | 6.42 | -- | -- | -- | -- |
| 72.38 | 0.398 | 3.33 | 0.0355 | 0.181 | -- | -- | -- | 0.0551 | 6.65 | -- | -- | -- | -- |
| 72.83 | 0.397 | 3.36 | 0.0847 | -- | -0.27 | -- | -- | -0.0384 | -- | 77.54 | 7063 | -- | -- |
| 71 | 0.392 | 3.36 | -- | 0.231 | -0.329 | -- | -- | -0.0828 | 6.68 | 69.76 | 4897 | -- | -- |
| 74.1 | 0.402 | 3.34 | 0.0397 | -- | -- | -- | -- | 0.0587 | -- | -- | -- | -- | -- |
| 72.41 | 0.398 | 3.33 | -- | 0.182 | -- | -- | -- | 0.0511 | 6.64 | -- | -- | -- | -- |
| 73 | 0.398 | 3.36 | -- | -- | -0.272 | -- | -- | -0.0531 | -- | 68.88 | 5616 | -- | -- |
| 74.14 | 0.402 | 3.34 | -- | -- | -- | -- | -- | 0.0543 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.53 | humidity | 80 | 10 | < th | dose independent | rect. | 2 | 6 |
| 3 | 65.59 | humidity | 80 | 10 | < th | dose independent | rect. | 24 | 8 |
| 7 | 65.70 | humidity | 80 | 10 | < th | dose independent | rect. | 6 | 2 |
| 11 | 66.05 | radiation | 10 | 30 | > th | dose independent | rect. | 7 | 1 |
| 36 | 67.26 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 2 | 3 |
| 37 | 67.35 | radiation | 10 | 10 | > th | dose independent | rect. | 16 | 16 |
| 38 | 67.41 | atmosphere | 995 | 10 | > th | dose independent | rect. | 3 | 23 |
| 42 | 67.53 | humidity | 80 | 14400 | < th | dose dependent | rect. | 3 | 6 |
| 54 | 67.93 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 3 |
| 55 | 67.99 | humidity | 80 | 14400 | < th | dose dependent | rect. | 21 | 13 |
| 59 | 68.01 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 1 |
| 64 | 68.08 | temperature | 25 | 90 | > th | dose dependent | rect. | 2 | 2 |
| 68 | 68.10 | atmosphere | 995 | 720 | > th | dose independent | rect. | 23 | 16 |
| 69 | 68.11 | humidity | 80 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 71 | 68.14 | humidity | 70 | 4320 | > th | dose dependent | rect. | 3 | 9 |
| 83 | 68.22 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 4 |
| 89 | 68.25 | humidity | 80 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 96 | 68.29 | humidity | 70 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 104 | 68.29 | humidity | 60 | 4320 | > th | dose dependent | rect. | 23 | 14 |
| 123 | 68.35 | humidity | 50 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 127 | 68.36 | humidity | 70 | 4320 | > th | dose dependent | sin | 4 | NA |
| 133 | 68.37 | humidity | 90 | 4320 | < th | dose independent | rect. | 4 | 5 |
| 134 | 68.37 | humidity | 80 | 4320 | > th | dose independent | rect. | 5 | 9 |
| 135 | 68.37 | humidity | 80 | 4320 | < th | dose independent | rect. | 5 | 9 |
| 137 | 68.37 | humidity | 70 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 194 | 68.44 | temperature | 25 | 30 | > th | dose independent | rect. | 7 | 1 |
| 236 | 68.47 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 237 | 68.47 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 265 | 68.49 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 327 | 68.56 | wind | 7 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 346 | 68.57 | humidity | 70 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 389 | 68.60 | humidity | 90 | 90 | < th | dose dependent | rect. | 1 | 7 |
| 402 | 68.61 | wind | 1 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 431 | 68.63 | humidity | 80 | 4320 | < th | dose independent | sin | 4 | NA |
| 432 | 68.63 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 443 | 68.64 | humidity | 70 | 4320 | > th | dose independent | rect. | 10 | 5 |
| 460 | 68.65 | humidity | 80 | 4320 | > th | dose independent | sin | 3 | NA |
| 479 | 68.66 | humidity | 90 | 90 | < th | dose independent | rect. | 2 | 3 |
| 493 | 68.66 | humidity | 70 | 4320 | > th | dose dependent | rect. | 10 | 2 |
| 508 | 68.67 | humidity | 70 | 4320 | > th | dose dependent | rect. | 9 | 4 |
| 532 | 68.68 | humidity | 90 | 4320 | < th | dose dependent | sin | 7 | NA |
| 599 | 68.71 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 8 | 23 |
| 601 | 68.71 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 676 | 68.76 | humidity | 90 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 680 | 68.76 | humidity | 70 | 4320 | < th | dose independent | rect. | 10 | 5 |
| 743 | 68.78 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 752 | 68.79 | humidity | 70 | 4320 | < th | dose independent | rect. | 10 | 3 |
| 765 | 68.79 | humidity | 80 | 4320 | < th | dose independent | rect. | 21 | 16 |
| 775 | 68.79 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 812 | 68.80 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 831 | 68.81 | wind | 5 | 14400 | < th | dose independent | rect. | 9 | 8 |
| 848 | 68.81 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 863 | 68.82 | wind | 5 | 14400 | < th | dose independent | rect. | 10 | 5 |
| 927 | 68.84 | wind | 7 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 930 | 68.84 | humidity | 90 | 720 | < th | dose independent | rect. | 1 | 4 |
| 935 | 68.84 | wind | 5 | 14400 | > th | dose independent | rect. | 9 | 8 |