Os11g0249400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
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Os11g0249400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Virulence factor, pectin lyase fold family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 293.9 | 0.805 | 4.12 | -1.55 | 0.169 | 4 | 0.419 | -10.1 | -0.297 | 20.6 | 1.071 | 103 | 3.97 | 0.567 |
| 320.76 | 0.834 | 4.05 | -1.15 | 0.149 | 3.9 | 0.838 | -- | -0.258 | 20.2 | 1.001 | 114 | 3.82 | 0.582 |
| 294.29 | 0.799 | 4.11 | -1.6 | 0.159 | 4.09 | -- | -10.7 | -0.295 | 20.2 | 1.156 | 104 | 3.97 | 0.567 |
| 313.69 | 0.825 | 4.07 | -1.01 | 0.0929 | 2.87 | -- | -- | -0.263 | 20 | 0.2074 | 102 | 3.91 | 0.723 |
| 295.52 | 0.801 | 4.11 | -1.57 | -- | 3.89 | -- | -10 | -0.303 | -- | 1.2 | 104 | 3.98 | 0.55 |
| 430.05 | 0.972 | 4.08 | -0.914 | 0.495 | -- | 0.831 | -- | -0.466 | 4.24 | -- | -- | -- | -- |
| 431.96 | 0.973 | 4.09 | -0.922 | 0.501 | -- | -- | -- | -0.47 | 4.33 | -- | -- | -- | -- |
| 304.01 | 0.812 | 4.05 | -1.04 | -- | 3.02 | -- | -- | -0.274 | -- | 1.339 | 95 | 3.95 | 0.65 |
| 332.99 | 0.85 | 4.03 | -- | 0.178 | 2.78 | -- | -- | -0.172 | 19.8 | 1.428 | 104 | 3.93 | 0.6 |
| 445.46 | 0.986 | 4.09 | -0.902 | -- | -- | -- | -- | -0.457 | -- | -- | -- | -- | -- |
| 454.38 | 0.997 | 4.06 | -- | 0.483 | -- | -- | -- | -0.368 | 4.37 | -- | -- | -- | -- |
| 334.7 | 0.852 | 4.03 | -- | -- | 2.65 | -- | -- | -0.194 | -- | 1.4 | 104 | 3.94 | 0.583 |
| 466.94 | 1.01 | 4.07 | -- | -- | -- | -- | -- | -0.357 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 306.81 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 2 | 307.61 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 3 | 316.47 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 5 | 316.78 | humidity | 50.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 6 | 317.75 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 36 | 329.15 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 38 | 329.75 | humidity | 70.0 | 720 | < th | dose independent | rect. | 19 | 1 |
| 50 | 330.68 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 66 | 334.77 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 81 | 337.27 | temperature | 30.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 95 | 337.38 | wind | 3.0 | 10 | < th | dose dependent | rect. | 4 | 3 |
| 98 | 338.36 | humidity | 90.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 99 | 338.90 | humidity | 70.0 | 720 | > th | dose independent | rect. | 19 | 8 |
| 102 | 340.17 | temperature | 25.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 147 | 342.71 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 152 | 343.81 | temperature | 20.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 156 | 345.69 | wind | 3.0 | 10 | < th | dose dependent | rect. | 4 | 5 |
| 174 | 346.62 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 6 |
| 186 | 347.81 | humidity | 90.0 | 10 | > th | dose independent | rect. | 4 | 2 |
| 188 | 348.63 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 18 |
| 191 | 348.77 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 4 | 2 |
| 212 | 351.34 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 13 |
| 217 | 351.43 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 4 | 2 |
| 226 | 352.73 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 7 |
| 231 | 353.01 | temperature | 20.0 | 10 | > th | dose independent | rect. | 4 | 2 |
| 290 | 353.78 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 18 | 10 |
| 295 | 353.99 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 301 | 354.33 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 18 | 2 |
| 320 | 354.53 | humidity | 50.0 | 1440 | < th | dose independent | sin | 11 | NA |
| 327 | 354.75 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 18 | 4 |
| 346 | 354.85 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 348 | 354.86 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 15 | 3 |
| 376 | 355.06 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 8 |
| 385 | 355.23 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 404 | 355.54 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 15 | 13 |
| 423 | 355.65 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 15 | 5 |
| 424 | 355.66 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 425 | 355.68 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 15 | 10 |
| 428 | 355.72 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 14 |
| 430 | 355.76 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 431 | 355.78 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 15 | 18 |
| 438 | 355.90 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 446 | 356.07 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 503 | 356.44 | humidity | 50.0 | 1440 | > th | dose independent | sin | 11 | NA |
| 511 | 356.58 | wind | 9.0 | 90 | < th | dose independent | rect. | 5 | 23 |
| 521 | 356.75 | radiation | 1.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 543 | 356.84 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 546 | 356.88 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 4 | 1 |
| 547 | 356.88 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 556 | 356.96 | temperature | 10.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 559 | 356.96 | humidity | 50.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 563 | 356.96 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 568 | 356.96 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 23 |
| 576 | 357.28 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 655 | 357.95 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 4 | 2 |
| 656 | 358.12 | humidity | 90.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 683 | 358.70 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 18 |
| 706 | 359.67 | humidity | 60.0 | 1440 | < th | dose dependent | sin | 12 | NA |
| 748 | 360.31 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 876 | 362.00 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 891 | 362.15 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 13 |
| 907 | 362.26 | wind | 7.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 909 | 362.26 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 912 | 362.26 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 916 | 362.26 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 925 | 362.26 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 926 | 362.26 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 927 | 362.26 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 936 | 362.26 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 23 |