Os11g0249600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Polygalacturonase C (Fragment).
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Os11g0249600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Polygalacturonase C (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.92 | 0.384 | 1130 | -6870 | 0.107 | 282000 | -0.0538 | -1720000 | 0.0452 | 5.64 | 995 | 90 | -- | -- |
| 82.39 | 0.426 | 3.1 | 0.0847 | 0.0688 | 1.83 | -0.213 | -- | 0.0371 | 4.77 | 995 | 90 | -- | -- |
| 67.93 | 0.384 | 1130 | -6870 | 0.107 | 282000 | -- | -1720000 | 0.0453 | 5.83 | 995 | 90 | -- | -- |
| 58.11 | 0.355 | 3.1 | 0.032 | 0.082 | 5.41 | -- | -- | 0.0677 | 5.36 | 994.6 | 31 | -- | -- |
| 68.52 | 0.386 | 1130 | -6870 | -- | 282000 | -- | -1720000 | 0.0477 | -- | 995 | 90 | -- | -- |
| 86.05 | 0.435 | 3.1 | 0.0967 | 0.0426 | -- | -0.291 | -- | 0.0318 | 4.32 | -- | -- | -- | -- |
| 86.25 | 0.435 | 3.1 | 0.0997 | 0.0496 | -- | -- | -- | 0.0334 | 6.34 | -- | -- | -- | -- |
| 58.46 | 0.356 | 3.1 | 0.0732 | -- | 5.29 | -- | -- | 0.0462 | -- | 994.6 | 111 | -- | -- |
| 58.04 | 0.355 | 3.1 | -- | 0.105 | 5.37 | -- | -- | 0.036 | 6.08 | 994.6 | 150 | -- | -- |
| 86.37 | 0.434 | 3.1 | 0.101 | -- | -- | -- | -- | 0.0345 | -- | -- | -- | -- | -- |
| 86.51 | 0.435 | 3.1 | -- | 0.051 | -- | -- | -- | 0.0223 | 6.23 | -- | -- | -- | -- |
| 58.6 | 0.357 | 3.1 | -- | -- | 5.3 | -- | -- | 0.0381 | -- | 994.7 | 124 | -- | -- |
| 86.64 | 0.434 | 3.1 | -- | -- | -- | -- | -- | 0.0233 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.70 | atmosphere | 995 | 30 | > th | dose independent | sin | 9 | NA |
| 5 | 57.85 | atmosphere | 995 | 30 | < th | dose dependent | rect. | 16 | 2 |
| 27 | 57.86 | atmosphere | 995 | 30 | < th | dose independent | rect. | 16 | 3 |
| 48 | 57.87 | atmosphere | 995 | 30 | < th | dose independent | sin | 8 | NA |
| 50 | 57.87 | atmosphere | 995 | 90 | < th | dose dependent | sin | 9 | NA |
| 96 | 57.91 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 17 | 1 |
| 381 | 58.22 | temperature | 30 | 10 | > th | dose independent | rect. | 17 | 1 |
| 383 | 58.26 | humidity | 70 | 30 | < th | dose independent | rect. | 18 | 1 |
| 489 | 59.28 | temperature | 30 | 90 | > th | dose dependent | rect. | 16 | 1 |
| 491 | 59.33 | temperature | 30 | 90 | > th | dose dependent | rect. | 16 | 17 |
| 530 | 60.17 | radiation | 10 | 90 | > th | dose dependent | rect. | 17 | 1 |
| 551 | 61.14 | radiation | 10 | 90 | > th | dose independent | rect. | 17 | 1 |
| 770 | 66.49 | temperature | 30 | 10 | > th | dose independent | sin | 11 | NA |
| 773 | 66.70 | humidity | 70 | 30 | < th | dose dependent | rect. | 18 | 1 |
| 792 | 67.44 | temperature | 30 | 10 | < th | dose independent | sin | 11 | NA |
| 799 | 67.94 | atmosphere | 995 | 90 | < th | dose dependent | no | NA | NA |