Os06g0545400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Polygalacturonase (Fragment).
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Os06g0545400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Polygalacturonase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.58 | 0.256 | 3.04 | 0.0299 | 0.0928 | 0.189 | -0.227 | 0.101 | -0.00612 | 7.3 | 1010 | 114 | -- | -- |
| 29.62 | 0.253 | 3.04 | 0.0388 | 0.0929 | 0.186 | -0.214 | -- | -0.00428 | 7.31 | 1010 | 113 | -- | -- |
| 29.67 | 0.254 | 3.04 | 0.0254 | 0.0926 | 0.189 | -- | 0.0911 | -0.00773 | 8.55 | 1010 | 113 | -- | -- |
| 29.69 | 0.254 | 3.04 | 0.0352 | 0.095 | 0.183 | -- | -- | -0.0036 | 8.52 | 1010 | 113 | -- | -- |
| 30.17 | 0.256 | 3.04 | 0.0289 | -- | 0.195 | -- | 0.0802 | -0.00311 | -- | 1010 | 113 | -- | -- |
| 30.45 | 0.259 | 3.04 | 0.0251 | 0.102 | -- | -0.163 | -- | -0.0197 | 7.89 | -- | -- | -- | -- |
| 30.5 | 0.259 | 3.04 | 0.0217 | 0.103 | -- | -- | -- | -0.019 | 8.74 | -- | -- | -- | -- |
| 30.2 | 0.256 | 3.04 | 0.0363 | -- | 0.193 | -- | -- | -0.00174 | -- | 1010 | 113 | -- | -- |
| 29.72 | 0.254 | 3.04 | -- | 0.0957 | 0.181 | -- | -- | -0.00699 | 8.45 | 1010 | 113 | -- | -- |
| 31.1 | 0.261 | 3.05 | 0.0219 | -- | -- | -- | -- | -0.0182 | -- | -- | -- | -- | -- |
| 30.51 | 0.258 | 3.05 | -- | 0.103 | -- | -- | -- | -0.0214 | 8.73 | -- | -- | -- | -- |
| 30.23 | 0.256 | 3.04 | -- | -- | 0.19 | -- | -- | -0.00599 | -- | 1010 | 113 | -- | -- |
| 31.11 | 0.26 | 3.05 | -- | -- | -- | -- | -- | -0.0206 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.86 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 21 | 7 |
| 2 | 28.07 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 4 | 28.27 | atmosphere | 1010.0 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 122 | 28.41 | atmosphere | 1010.0 | 10 | > th | dose dependent | sin | 23 | NA |
| 339 | 28.45 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 383 | 28.49 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 20 | 10 |
| 506 | 28.53 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 528 | 28.62 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 4 | 16 |
| 541 | 28.65 | temperature | 20.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 560 | 28.69 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 20 | 1 |
| 561 | 28.69 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 21 | 1 |
| 583 | 28.69 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 20 | 1 |
| 584 | 28.69 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 21 | 1 |
| 618 | 28.71 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 630 | 28.71 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 650 | 28.74 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 723 | 28.81 | wind | 1.0 | 90 | < th | dose dependent | rect. | 20 | 1 |
| 734 | 28.84 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 742 | 28.87 | atmosphere | 1010.0 | 10 | > th | dose independent | rect. | 10 | 2 |
| 876 | 28.94 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 878 | 28.96 | radiation | 1.0 | 720 | < th | dose independent | rect. | 8 | 1 |
| 880 | 28.96 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 882 | 28.96 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 8 | 1 |
| 893 | 28.98 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 895 | 28.98 | wind | 9.0 | 10 | < th | dose independent | rect. | 3 | 23 |
| 900 | 28.99 | humidity | 50.0 | 10 | > th | dose independent | sin | 8 | NA |
| 901 | 28.99 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 922 | 29.00 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 924 | 29.00 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 925 | 29.00 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 929 | 29.00 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 931 | 29.00 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 933 | 29.00 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 938 | 29.00 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 939 | 29.00 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 940 | 29.00 | wind | 5.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 945 | 29.00 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 948 | 29.00 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 953 | 29.00 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 976 | 29.02 | atmosphere | 1010.0 | 10 | < th | dose independent | sin | 20 | NA |
| 994 | 29.03 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 8 |