Os01g0623600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Polygalacturonase precursor (EC 3.2.1.15) (PG) (Pectinase).
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Os01g0623600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Polygalacturonase precursor (EC 3.2.1.15) (PG) (Pectinase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.4 | 0.217 | 3.22 | -0.207 | 0.0563 | 0.932 | 0.282 | -3.19 | -0.058 | 10.7 | 30.72 | 357 | -- | -- |
| 21.49 | 0.216 | 3.2 | -0.0239 | 0.0688 | 0.6 | 0.263 | -- | -0.0525 | 10 | 30.96 | 386 | -- | -- |
| 21.7 | 0.217 | 3.22 | -0.194 | 0.061 | 0.92 | -- | -3.09 | -0.0594 | 9.53 | 30.58 | 356 | -- | -- |
| 21.77 | 0.217 | 3.2 | -0.012 | 0.0611 | 0.612 | -- | -- | -0.0585 | 9.36 | 31.64 | 357 | -- | -- |
| 21.9 | 0.218 | 3.22 | -0.197 | -- | 0.907 | -- | -3.15 | -0.0582 | -- | 30.39 | 348 | -- | -- |
| 26.93 | 0.243 | 3.21 | 0.0355 | 0.105 | -- | 0.434 | -- | -0.0954 | 15.8 | -- | -- | -- | -- |
| 27.47 | 0.245 | 3.21 | 0.0417 | 0.11 | -- | -- | -- | -0.0929 | 16.4 | -- | -- | -- | -- |
| 21.96 | 0.218 | 3.2 | -0.00915 | -- | 0.6 | -- | -- | -0.0603 | -- | 31.8 | 341 | -- | -- |
| 21.77 | 0.217 | 3.2 | -- | 0.0609 | 0.612 | -- | -- | -0.0574 | 9.38 | 31.68 | 356 | -- | -- |
| 28.12 | 0.248 | 3.21 | 0.0374 | -- | -- | -- | -- | -0.0958 | -- | -- | -- | -- | -- |
| 27.52 | 0.245 | 3.21 | -- | 0.11 | -- | -- | -- | -0.0975 | 16.4 | -- | -- | -- | -- |
| 21.97 | 0.218 | 3.2 | -- | -- | 0.6 | -- | -- | -0.0594 | -- | 31.8 | 340 | -- | -- |
| 28.16 | 0.248 | 3.21 | -- | -- | -- | -- | -- | -0.0999 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.01 | temperature | 25 | 10 | > th | dose dependent | rect. | 16 | 6 |
| 3 | 21.02 | temperature | 25 | 10 | > th | dose dependent | rect. | 16 | 11 |
| 4 | 21.02 | temperature | 25 | 10 | > th | dose dependent | rect. | 16 | 15 |
| 23 | 21.16 | temperature | 30 | 270 | > th | dose dependent | rect. | 13 | 21 |
| 28 | 21.20 | temperature | 30 | 270 | > th | dose dependent | rect. | 13 | 5 |
| 45 | 21.23 | temperature | 30 | 270 | > th | dose dependent | rect. | 14 | 3 |
| 50 | 21.24 | temperature | 25 | 90 | > th | dose dependent | rect. | 15 | 18 |
| 58 | 21.29 | humidity | 80 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 60 | 21.30 | temperature | 25 | 10 | > th | dose dependent | rect. | 16 | 18 |
| 63 | 21.31 | temperature | 30 | 270 | > th | dose independent | rect. | 14 | 3 |
| 78 | 21.31 | humidity | 70 | 10 | < th | dose independent | rect. | 16 | 17 |
| 95 | 21.32 | humidity | 80 | 10 | < th | dose dependent | rect. | 16 | 4 |
| 99 | 21.33 | humidity | 80 | 90 | < th | dose dependent | rect. | 15 | 19 |
| 100 | 21.34 | temperature | 30 | 270 | > th | dose dependent | sin | 16 | NA |
| 104 | 21.35 | humidity | 80 | 10 | < th | dose dependent | rect. | 16 | 8 |
| 105 | 21.35 | humidity | 80 | 10 | < th | dose dependent | rect. | 16 | 10 |
| 123 | 21.37 | humidity | 80 | 10 | < th | dose dependent | rect. | 16 | 18 |
| 168 | 21.46 | humidity | 60 | 270 | < th | dose independent | rect. | 13 | 5 |
| 169 | 21.46 | temperature | 30 | 270 | > th | dose independent | rect. | 13 | 21 |
| 228 | 21.52 | humidity | 80 | 10 | < th | dose dependent | sin | 12 | NA |
| 264 | 21.54 | humidity | 70 | 90 | < th | dose dependent | sin | 12 | NA |
| 271 | 21.56 | temperature | 25 | 30 | > th | dose dependent | sin | 13 | NA |
| 279 | 21.59 | temperature | 30 | 90 | > th | dose dependent | sin | 11 | NA |
| 321 | 21.62 | humidity | 60 | 270 | < th | dose dependent | rect. | 13 | 4 |
| 323 | 21.63 | temperature | 30 | 90 | < th | dose independent | sin | 13 | NA |
| 332 | 21.64 | humidity | 70 | 10 | < th | dose independent | rect. | 16 | 4 |
| 381 | 21.66 | temperature | 30 | 90 | > th | dose independent | sin | 13 | NA |
| 386 | 21.67 | temperature | 30 | 270 | > th | dose dependent | no | NA | NA |
| 571 | 21.73 | temperature | 30 | 270 | < th | dose independent | rect. | 10 | 12 |
| 581 | 21.74 | temperature | 30 | 270 | > th | dose independent | sin | 17 | NA |
| 726 | 21.85 | radiation | 20 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 727 | 21.86 | humidity | 60 | 270 | > th | dose independent | sin | 15 | NA |
| 767 | 21.88 | humidity | 60 | 270 | < th | dose independent | sin | 15 | NA |
| 855 | 21.94 | radiation | 20 | 720 | > th | dose independent | rect. | 16 | 16 |
| 911 | 22.00 | temperature | 30 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 928 | 22.01 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 23 |
| 953 | 22.02 | radiation | 20 | 720 | > th | dose dependent | rect. | 16 | 16 |
| 980 | 22.04 | radiation | 1 | 90 | > th | dose dependent | rect. | 16 | 13 |