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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0517500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Polygalacturonase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.39 (0.0529) R2 : 0.25
β1 : 0.573 (0.191) R2dD : 0.0165 R2D : -0.0192
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.88 (0.272) R2dE : 0.342 R2E : -0.115
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 11.6 (1.12) R2dD*E : 0.325 R2D*E : -0.108
γ1 : -0.187 (0.113) R2dN8 : 0.00681 R2N8 : -0.00147
σ : 0.935
deviance : 403.34
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 5.2
memory length : 4053
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 21
open length of G : 1.01

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
394.16 0.933 3.39 0.564 0.352 2.92 0.619 11.8 -0.187 13.4 5.2 4087 21 1.01
505.77 1.05 3.3 0.711 0.312 2.77 0.342 -- 0.024 13.1 4.928 5408 20.7 1.13
395.59 0.926 3.39 0.587 0.353 2.91 -- 11.7 -0.182 12.9 5.206 4034 21 1.02
456.13 0.995 3.27 0.65 0.3 1.28 -- -- -0.0625 11.2 5.621 3865 19.7 1.38
403.34 0.935 3.39 0.573 -- 2.88 -- 11.6 -0.187 -- 5.2 4053 21 1.01
517.97 1.07 3.27 0.315 0.34 -- 0.345 -- -0.309 11.9 -- -- -- --
518.48 1.07 3.27 0.329 0.339 -- -- -- -0.308 11.9 -- -- -- --
452.11 0.99 3.21 0.487 -- 1.78 -- -- 0.0452 -- 5.903 5736 19.7 1.08
429.32 0.965 3.24 -- 0.286 2.16 -- -- -0.118 11.1 6.497 4371 20.1 0.366
525.71 1.07 3.28 0.318 -- -- -- -- -0.312 -- -- -- -- --
521.33 1.07 3.28 -- 0.335 -- -- -- -0.345 11.8 -- -- -- --
432.06 0.968 3.25 -- -- 2.22 -- -- -0.159 -- 6.778 4318 20.2 0.363
528.39 1.07 3.29 -- -- -- -- -- -0.348 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 401.66 wind 5 4320 > th dose independent rect. 21 1
2 403.75 wind 5 4320 > th dose dependent rect. 18 5
5 406.08 wind 5 4320 > th dose dependent rect. 21 1
7 408.18 wind 5 4320 < th dose independent rect. 21 1
11 410.09 wind 7 4320 < th dose independent rect. 18 7
16 411.34 wind 7 4320 < th dose independent rect. 18 5
23 413.99 wind 7 4320 > th dose independent rect. 18 7
25 414.64 wind 7 4320 > th dose independent rect. 18 4
54 419.29 wind 5 1440 > th dose independent rect. 12 22
64 420.44 wind 5 1440 < th dose independent rect. 12 22
105 422.92 wind 5 1440 > th dose independent rect. 7 20
121 423.38 wind 5 1440 < th dose independent rect. 7 19
137 423.71 humidity 80 1440 < th dose independent rect. 22 1
141 423.82 wind 5 4320 > th dose independent rect. 16 9
164 424.68 wind 7 4320 > th dose independent rect. 8 1
169 424.81 wind 5 1440 > th dose independent rect. 17 23
171 425.00 humidity 90 1440 < th dose dependent rect. 3 1
192 425.48 wind 5 4320 < th dose independent rect. 16 9
194 425.54 humidity 90 1440 < th dose dependent rect. 23 8
219 425.99 wind 5 1440 > th dose independent no NA NA
220 425.99 wind 5 1440 < th dose independent rect. 17 23
224 426.05 wind 5 1440 > th dose independent rect. 2 23
232 426.25 wind 5 1440 > th dose independent rect. 24 23
236 426.33 humidity 80 270 < th dose independent sin 11 NA
263 426.70 wind 5 1440 > th dose independent rect. 15 23
273 426.92 wind 5 1440 > th dose independent rect. 12 16
275 426.94 wind 5 1440 > th dose independent rect. 21 23
279 427.00 wind 5 1440 < th dose independent no NA NA
280 427.00 wind 5 1440 < th dose independent rect. 2 23
298 427.30 wind 5 1440 < th dose independent rect. 24 23
300 427.34 humidity 90 1440 < th dose dependent rect. 2 5
325 427.91 wind 5 1440 < th dose independent rect. 19 23
326 427.93 humidity 80 1440 < th dose independent rect. 21 4
327 427.93 wind 5 1440 < th dose independent rect. 21 23
331 427.96 wind 5 1440 < th dose independent rect. 12 16
333 428.00 wind 5 1440 < th dose independent rect. 12 14
354 428.26 wind 5 4320 > th dose independent sin 14 NA
365 428.43 wind 5 1440 < th dose independent rect. 15 23
421 429.29 temperature 20 720 < th dose independent rect. 18 1
428 429.37 wind 5 4320 < th dose independent sin 15 NA
451 429.70 humidity 80 1440 > th dose independent rect. 22 1
455 429.79 wind 5 1440 > th dose independent sin 17 NA
493 430.62 wind 5 1440 < th dose independent sin 17 NA
515 430.99 humidity 80 270 > th dose independent sin 11 NA
518 431.04 wind 5 1440 > th dose dependent rect. 15 19
523 431.23 wind 7 4320 < th dose independent rect. 8 1
577 432.42 humidity 90 1440 < th dose dependent rect. 5 2
581 432.57 wind 5 1440 > th dose dependent rect. 12 22
599 432.88 humidity 50 1440 > th dose dependent rect. 1 6
608 433.06 humidity 70 1440 > th dose dependent rect. 24 8
619 433.25 humidity 50 1440 > th dose dependent rect. 24 8
680 434.25 humidity 80 90 < th dose independent rect. 21 9
697 434.54 humidity 50 1440 > th dose dependent rect. 1 3
720 434.90 radiation 20 1440 > th dose independent rect. 6 1
760 435.21 humidity 50 1440 > th dose dependent rect. 2 1
768 435.35 wind 5 14400 < th dose independent rect. 13 16
823 435.99 wind 5 14400 > th dose independent rect. 13 16
826 436.00 humidity 50 1440 > th dose dependent rect. 23 5
866 436.63 atmosphere 995 14400 > th dose independent rect. 17 4
870 436.74 atmosphere 995 14400 > th dose independent rect. 17 1
887 436.90 wind 3 1440 > th dose dependent rect. 7 18
888 436.91 atmosphere 995 14400 < th dose independent rect. 18 1
892 436.91 atmosphere 995 14400 < th dose dependent rect. 18 1
925 437.24 humidity 80 10 < th dose independent rect. 20 11
941 437.32 humidity 80 1440 < th dose dependent rect. 21 3