FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0611500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Polygalacturonase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.13 (0.0245) R2 : 0.45
β1 : 0.52 (0.0891) R2dD : 0.0444 R2D : 0.00183
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.8 (0.113) R2dE : 0.461 R2E : -0.108
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.44 (0.498) R2dD*E : 0.501 R2D*E : -0.00302
γ1 : 0.0447 (0.053) R2dN8 : 0.00128 R2N8 : -0.0162
σ : 0.446
deviance : 91.64
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 6.622
memory length : 4322
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.3
open length of G : 4.24

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
91.7 0.45 3.13 0.502 0.045 -1.75 -0.557 -8.15 0.042 5.92 6.563 4323 18.3 4.01
149.92 0.57 3.12 0.462 0.0654 -0.834 -0.0249 -- 0.0339 6.61 6.621 4328 18.3 3.96
91.74 0.446 3.13 0.512 0.0433 -1.77 -- -8.32 0.043 5.89 6.603 4322 18.3 4.19
140.63 0.552 3.11 0.494 0.0735 -0.803 -- -- 0.0224 5.83 6.798 4319 18.3 2.71
91.64 0.446 3.13 0.52 -- -1.8 -- -8.44 0.0447 -- 6.622 4322 18.3 4.24
162.95 0.598 3.07 0.317 0.105 -- -0.144 -- -0.0323 8.47 -- -- -- --
162.99 0.598 3.07 0.313 0.106 -- -- -- -0.0317 9.31 -- -- -- --
139.53 0.55 3.1 0.492 -- -0.809 -- -- 0.0351 -- 6.611 4319 18.3 2.67
143.18 0.557 3.1 -- 0.0877 -0.785 -- -- 0.0114 6.64 6.6 4320 18.6 2.48
163.64 0.598 3.08 0.313 -- -- -- -- -0.0312 -- -- -- -- --
165.58 0.602 3.08 -- 0.106 -- -- -- -0.0665 9.08 -- -- -- --
120.68 0.512 3.1 -- -- -0.801 -- -- 0.0131 -- 8.8 4319 18.7 2.42
166.22 0.602 3.08 -- -- -- -- -- -0.0659 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 95.62 wind 5 4320 > th dose dependent rect. 20 3
2 95.81 wind 7 4320 < th dose independent rect. 18 4
9 96.81 wind 7 4320 > th dose independent rect. 18 4
28 98.52 humidity 90 1440 < th dose dependent rect. 3 1
35 98.94 wind 9 4320 > th dose dependent rect. 20 1
58 99.32 wind 5 4320 > th dose independent rect. 21 1
156 103.71 wind 7 1440 > th dose independent rect. 8 1
157 103.72 humidity 90 1440 < th dose dependent rect. 2 5
159 103.99 humidity 90 1440 < th dose dependent rect. 23 8
161 104.15 atmosphere 995 14400 < th dose independent rect. 18 1
164 104.15 atmosphere 995 14400 < th dose dependent rect. 18 1
186 104.38 atmosphere 995 14400 > th dose independent rect. 16 5
187 104.40 atmosphere 995 14400 > th dose independent rect. 16 3
197 104.87 wind 7 1440 < th dose independent rect. 8 1
248 106.27 atmosphere 995 14400 > th dose independent rect. 8 13
249 106.28 atmosphere 995 14400 > th dose independent rect. 8 11
250 106.28 atmosphere 995 14400 > th dose independent rect. 10 11
251 106.29 atmosphere 995 14400 > th dose independent rect. 10 9
295 107.08 humidity 90 1440 < th dose dependent rect. 23 5
327 107.25 humidity 80 1440 < th dose independent rect. 22 1
384 108.38 temperature 20 720 < th dose independent rect. 18 2
424 109.20 humidity 70 1440 > th dose dependent rect. 2 5
433 109.29 temperature 20 720 < th dose independent rect. 11 9
439 109.36 wind 7 1440 > th dose independent rect. 1 8
454 109.58 humidity 90 1440 < th dose dependent rect. 5 1
517 110.09 wind 5 1440 > th dose dependent rect. 8 1
531 110.16 atmosphere 995 14400 < th dose dependent sin 0 NA
532 110.17 atmosphere 995 14400 < th dose independent sin 22 NA
537 110.19 atmosphere 995 14400 > th dose independent sin 22 NA
555 110.32 atmosphere 995 14400 < th dose independent rect. 18 22
558 110.34 atmosphere 995 14400 > th dose independent rect. 19 21
565 110.35 humidity 80 1440 > th dose dependent rect. 5 1
591 110.40 atmosphere 995 14400 > th dose independent sin 3 NA
628 110.51 atmosphere 995 14400 < th dose independent sin 3 NA
635 110.53 humidity 70 1440 > th dose dependent rect. 3 1
780 110.98 atmosphere 995 14400 > th dose independent rect. 24 21
829 111.04 atmosphere 995 14400 > th dose independent no NA NA
845 111.04 atmosphere 995 14400 > th dose independent rect. 10 23
846 111.04 atmosphere 995 14400 > th dose independent rect. 12 23
847 111.04 atmosphere 995 14400 > th dose independent rect. 14 23
863 111.06 atmosphere 995 14400 > th dose independent rect. 12 21
994 111.23 atmosphere 995 14400 > th dose independent rect. 14 19
998 111.24 atmosphere 995 14400 < th dose independent no NA NA