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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0327200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Virulence factor, pectin lyase fold family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.76 (0.0276) R2 : 0.0292
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.215 (0.058) R2dN8 : 0.0377 R2N8 : 0.0292
σ : 0.519
deviance : 123.59
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
117.11 0.508 2.75 0.0447 0.103 -0.334 -0.268 4.05 0.217 4.24 0.1467 9 -- --
121.16 0.513 2.75 0.0434 0.0685 0.531 -0.119 -- 0.233 4.37 0.006537 8 -- --
117.29 0.504 2.74 0.0487 0.104 -0.338 -- 3.98 0.219 4.86 0.1286 8 -- --
120.78 0.512 2.76 0.0187 0.0455 0.491 -- -- 0.231 4.23 1.2 8 -- --
117.83 0.506 2.75 0.0491 -- -0.253 -- 3.85 0.223 -- 0.1128 8 -- --
122.82 0.52 2.76 0.0487 0.113 -- -0.039 -- 0.218 4.03 -- -- -- --
122.82 0.519 2.76 0.0491 0.113 -- -- -- 0.218 3.96 -- -- -- --
120.88 0.512 2.76 0.0186 -- 0.525 -- -- 0.233 -- 1.207 8 -- --
120.79 0.512 2.76 -- 0.0455 0.495 -- -- 0.228 4.02 1.2 8 -- --
123.51 0.519 2.76 0.0537 -- -- -- -- 0.221 -- -- -- -- --
122.88 0.519 2.76 -- 0.113 -- -- -- 0.212 3.96 -- -- -- --
120.89 0.512 2.76 -- -- 0.528 -- -- 0.231 -- 1.21 8 -- --
123.59 0.519 2.76 -- -- -- -- -- 0.215 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 108.88 precipitation 0.1 90 > th dose independent rect. 7 1
7 108.88 precipitation 0.1 90 > th dose dependent rect. 7 1
13 108.89 wind 5.0 90 > th dose independent rect. 6 1
14 108.89 wind 5.0 10 > th dose independent rect. 7 1
26 108.89 wind 5.0 90 > th dose dependent rect. 6 1
27 108.89 wind 5.0 10 > th dose dependent rect. 7 1
69 110.33 radiation 10.0 10 < th dose dependent rect. 8 1
101 114.04 radiation 10.0 10 < th dose independent rect. 8 1
107 114.29 temperature 25.0 270 > th dose independent rect. 1 1
117 114.48 temperature 25.0 90 > th dose independent rect. 1 4
119 114.49 temperature 25.0 270 > th dose dependent rect. 2 1
143 115.34 precipitation 0.1 270 > th dose independent rect. 4 4
145 115.34 precipitation 0.1 270 > th dose dependent rect. 4 4
148 115.40 wind 1.0 30 < th dose dependent rect. 23 4
153 115.46 wind 1.0 10 < th dose independent rect. 23 1
157 115.46 wind 1.0 10 < th dose dependent rect. 23 1
166 115.66 wind 1.0 10 < th dose independent rect. 23 4
205 116.03 precipitation 0.1 270 > th dose independent rect. 4 1
206 116.03 precipitation 0.1 270 > th dose dependent rect. 4 1
274 116.40 wind 7.0 30 > th dose independent rect. 16 1
303 116.57 wind 1.0 10 < th dose dependent rect. 5 20
304 116.58 wind 1.0 90 < th dose independent rect. 22 2
305 116.58 wind 5.0 10 > th dose dependent rect. 16 1
311 116.59 temperature 25.0 90 > th dose independent rect. 4 1
329 116.68 temperature 25.0 90 > th dose dependent rect. 4 1
362 116.76 temperature 30.0 30 < th dose independent rect. 16 1
363 116.76 humidity 50.0 30 > th dose independent rect. 16 1
365 116.76 atmosphere 1005.0 30 > th dose independent rect. 16 1
371 116.80 atmosphere 1005.0 30 > th dose dependent rect. 16 1
389 116.85 wind 1.0 30 > th dose dependent rect. 4 1
405 116.90 humidity 50.0 30 > th dose dependent rect. 16 1
409 116.92 humidity 90.0 10 < th dose independent rect. 4 1
417 116.95 radiation 10.0 10 < th dose independent rect. 16 1
425 116.97 wind 1.0 10 < th dose dependent sin 16 NA
430 116.98 wind 1.0 30 > th dose independent rect. 4 1
454 117.04 wind 1.0 10 < th dose dependent rect. 5 23
530 117.24 atmosphere 1005.0 30 > th dose dependent rect. 4 1
562 117.40 radiation 20.0 30 < th dose dependent rect. 16 1
568 117.44 wind 1.0 10 < th dose independent rect. 5 23
593 117.53 temperature 30.0 30 < th dose dependent rect. 16 1
614 117.58 atmosphere 1005.0 270 > th dose dependent rect. 1 2
636 117.66 wind 1.0 10 < th dose independent sin 14 NA
638 117.66 atmosphere 1005.0 30 > th dose dependent rect. 2 3
639 117.67 humidity 80.0 10 < th dose independent rect. 16 1
669 117.70 temperature 25.0 10 > th dose independent rect. 16 1
673 117.72 radiation 1.0 10 > th dose independent rect. 16 1
678 117.73 wind 1.0 10 > th dose independent sin 15 NA
705 117.77 wind 9.0 10 < th dose independent rect. 16 1
706 117.77 temperature 10.0 10 > th dose independent rect. 16 1
708 117.77 atmosphere 1010.0 10 < th dose independent rect. 16 1
712 117.77 precipitation 0.1 10 < th dose independent rect. 16 1
716 117.77 temperature 10.0 10 > th dose independent rect. 17 23
718 117.77 precipitation 0.1 10 < th dose dependent rect. 16 1
732 117.82 wind 9.0 30 < th dose independent rect. 17 23
789 117.92 temperature 10.0 10 > th dose dependent rect. 16 1
796 117.94 precipitation 0.1 270 > th dose independent rect. 23 9
799 117.94 precipitation 0.1 270 > th dose dependent rect. 23 9
861 118.09 wind 1.0 90 > th dose independent rect. 15 14
864 118.09 atmosphere 1015.0 30 < th dose dependent rect. 16 1
866 118.11 atmosphere 1005.0 30 > th dose independent rect. 4 1
870 118.12 wind 5.0 30 < th dose independent rect. 4 1
875 118.12 radiation 1.0 30 < th dose dependent rect. 4 1
877 118.12 radiation 10.0 10 < th dose dependent rect. 2 7
882 118.13 temperature 10.0 30 > th dose independent rect. 4 1
884 118.13 temperature 30.0 30 < th dose independent rect. 4 1
885 118.13 humidity 50.0 30 > th dose independent rect. 4 1
889 118.13 atmosphere 995.0 30 > th dose independent rect. 4 1
891 118.13 atmosphere 1010.0 30 < th dose independent rect. 4 1
893 118.13 radiation 1.0 30 < th dose independent rect. 4 1
898 118.13 temperature 10.0 30 > th dose independent rect. 5 23
908 118.14 precipitation 0.1 30 < th dose independent rect. 4 1
910 118.14 precipitation 0.1 30 < th dose dependent rect. 4 1
917 118.15 wind 1.0 10 > th dose independent rect. 17 11
926 118.17 radiation 1.0 30 > th dose dependent rect. 16 1
932 118.19 humidity 50.0 30 > th dose dependent rect. 4 1
941 118.22 wind 9.0 30 < th dose dependent rect. 4 1
942 118.22 wind 9.0 30 < th dose dependent rect. 16 1
944 118.23 wind 9.0 30 < th dose independent rect. 5 23
952 118.24 humidity 90.0 10 < th dose dependent rect. 16 1
953 118.24 temperature 15.0 90 > th dose dependent rect. 1 7
976 118.27 temperature 25.0 1440 < th dose independent rect. 1 1
978 118.27 temperature 25.0 10 > th dose independent rect. 2 3
993 118.28 atmosphere 1015.0 30 < th dose dependent rect. 4 1
996 118.29 temperature 30.0 30 < th dose dependent rect. 4 1