Os03g0808000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Polygalacturonase B (Fragment).
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Os03g0808000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Polygalacturonase B (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 155.37 | 0.586 | 3.58 | -0.699 | 0.72 | 3.82 | -0.243 | -9.6 | 0.564 | 4.93 | 0.9072 | 108 | 3.97 | 0.986 |
| 162.52 | 0.594 | 3.5 | -0.163 | 0.611 | 2.78 | -0.544 | -- | 0.602 | 4.45 | 1.237 | 114 | 3.94 | 1.13 |
| 155.29 | 0.58 | 3.58 | -0.697 | 0.703 | 3.75 | -- | -9.47 | 0.558 | 4.87 | 0.9693 | 186 | 3.97 | 0.983 |
| 158.25 | 0.586 | 3.53 | -0.317 | 0.629 | 2.97 | -- | -- | 0.538 | 4.69 | 1.234 | 93 | 3.91 | 1.07 |
| 176.16 | 0.618 | 3.58 | -0.685 | -- | 4 | -- | -8.65 | 0.607 | -- | 0.9 | 176 | 3.98 | 0.783 |
| 264.94 | 0.763 | 3.55 | -0.112 | 1.26 | -- | 0.635 | -- | 0.412 | 5.11 | -- | -- | -- | -- |
| 265.96 | 0.764 | 3.55 | -0.112 | 1.27 | -- | -- | -- | 0.409 | 5.1 | -- | -- | -- | -- |
| 164.09 | 0.597 | 3.52 | -0.241 | -- | 3.22 | -- | -- | 0.659 | -- | 1.407 | 122 | 3.62 | 1.14 |
| 159.82 | 0.589 | 3.52 | -- | 0.626 | 2.9 | -- | -- | 0.592 | 4.98 | 1.36 | 96 | 3.88 | 1.04 |
| 349.92 | 0.874 | 3.56 | -0.0671 | -- | -- | -- | -- | 0.442 | -- | -- | -- | -- | -- |
| 266.29 | 0.763 | 3.55 | -- | 1.26 | -- | -- | -- | 0.422 | 5.11 | -- | -- | -- | -- |
| 165.33 | 0.599 | 3.52 | -- | -- | 3.05 | -- | -- | 0.646 | -- | 1.6 | 123 | 3.58 | 1.2 |
| 350.04 | 0.873 | 3.56 | -- | -- | -- | -- | -- | 0.449 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 158.10 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 2 | 161.08 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 16 | 161.40 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 18 | 161.97 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 3 | 3 |
| 33 | 164.34 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 34 | 164.42 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 35 | 164.93 | humidity | 50.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 36 | 165.00 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 39 | 166.42 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 4 | 2 |
| 40 | 166.79 | temperature | 20.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 43 | 167.87 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 2 | 5 |
| 51 | 170.13 | temperature | 20.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 53 | 170.27 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 56 | 170.57 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 59 | 170.95 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 69 | 172.31 | temperature | 20.0 | 10 | > th | dose independent | rect. | 4 | 2 |
| 97 | 173.97 | wind | 3.0 | 10 | < th | dose dependent | rect. | 4 | 2 |
| 113 | 175.18 | humidity | 90.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 123 | 176.21 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 126 | 176.37 | temperature | 30.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 155 | 177.78 | temperature | 20.0 | 10 | > th | dose independent | rect. | 2 | 5 |
| 163 | 178.85 | humidity | 70.0 | 720 | < th | dose independent | rect. | 19 | 12 |
| 165 | 179.12 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 18 | 13 |
| 166 | 179.18 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 18 | 2 |
| 180 | 179.47 | humidity | 70.0 | 720 | < th | dose independent | rect. | 19 | 1 |
| 265 | 182.06 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 9 |
| 270 | 182.15 | temperature | 25.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 279 | 182.59 | wind | 1.0 | 90 | < th | dose dependent | rect. | 4 | 13 |
| 335 | 183.71 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 339 | 183.87 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 16 | 13 |
| 341 | 183.93 | radiation | 1.0 | 720 | > th | dose independent | rect. | 18 | 11 |
| 342 | 183.96 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 16 | 11 |
| 365 | 184.09 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 16 | 9 |
| 367 | 184.15 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 16 | 4 |
| 369 | 184.19 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 17 |
| 372 | 184.23 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 16 | 17 |
| 378 | 184.32 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 460 | 185.10 | humidity | 70.0 | 720 | > th | dose independent | rect. | 19 | 8 |
| 467 | 185.21 | temperature | 30.0 | 1440 | > th | dose dependent | sin | 12 | NA |
| 482 | 185.28 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 486 | 185.29 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 489 | 185.37 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 5 |
| 505 | 185.41 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 507 | 185.47 | radiation | 1.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 523 | 185.52 | temperature | 15.0 | 90 | > th | dose independent | rect. | 5 | 23 |
| 524 | 185.53 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 4 | 1 |
| 526 | 185.53 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 529 | 185.56 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 11 |
| 530 | 185.57 | wind | 7.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 531 | 185.57 | radiation | 1.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 535 | 185.58 | temperature | 10.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 538 | 185.58 | humidity | 50.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 541 | 185.58 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 542 | 185.58 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 548 | 185.60 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 557 | 185.67 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 14 |
| 566 | 185.82 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 568 | 185.85 | wind | 9.0 | 90 | < th | dose independent | rect. | 5 | 23 |
| 738 | 186.97 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 4 | 2 |
| 764 | 187.45 | temperature | 20.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 778 | 187.57 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 6 |
| 900 | 189.38 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 902 | 189.38 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 18 | 11 |
| 943 | 189.63 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 9 |
| 992 | 189.90 | temperature | 30.0 | 1440 | > th | dose dependent | no | NA | NA |