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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0130200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Virulence factor, pectin lyase fold family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.75 (0.0329) R2 : 0.216
β1 : -0.359 (0.121) R2dD : 0.0159 R2D : -0.00794
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.1 (0.326) R2dE : 0.0722 R2E : 0.0418
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.36 (1.1) R2dD*E : 0.102 R2D*E : 0.0715
γ1 : -0.365 (0.0703) R2dN8 : 0.0623 R2N8 : 0.0447
σ : 0.615
deviance : 174.44
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 88.62
memory length : 45
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.67
open length of G : 1.08

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
162.25 0.598 3.76 -0.407 0.387 1.98 -0.783 -8.22 -0.374 23.7 90 48 2.8 0.957
179.96 0.625 3.76 -0.438 0.414 2.51 -0.951 -- -0.388 0.0269 87.16 19 2.95 1.03
164.77 0.598 3.76 -0.368 0.394 2.03 -- -8.38 -0.37 23.2 88.81 45 2.73 1.05
183.42 0.631 3.76 -0.378 0.396 2.66 -- -- -0.38 23.3 87.64 19 2.89 1.17
174.44 0.615 3.75 -0.359 -- 2.1 -- -8.36 -0.365 -- 88.62 45 2.67 1.08
193.49 0.652 3.76 -0.443 0.406 -- -1.04 -- -0.407 0.599 -- -- -- --
197.74 0.659 3.76 -0.401 0.416 -- -- -- -0.4 23.8 -- -- -- --
193.21 0.647 3.75 -0.368 -- 2.73 -- -- -0.375 -- 88 20 3.11 1.31
187.17 0.637 3.75 -- 0.392 2.72 -- -- -0.337 23.2 87.64 18 2.96 1.3
208.61 0.675 3.75 -0.389 -- -- -- -- -0.395 -- -- -- -- --
201.99 0.665 3.75 -- 0.411 -- -- -- -0.355 23.7 -- -- -- --
196.76 0.653 3.74 -- -- 2.78 -- -- -0.334 -- 87.59 19 3.08 1.49
212.61 0.681 3.74 -- -- -- -- -- -0.352 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 162.28 humidity 90 30 < th dose independent rect. 3 1
2 162.29 humidity 80 90 < th dose independent rect. 2 3
3 162.31 humidity 80 90 < th dose dependent rect. 2 3
5 162.33 humidity 90 30 < th dose dependent rect. 3 1
33 168.00 temperature 25 30 > th dose independent rect. 7 1
54 170.87 atmosphere 1005 10 > th dose dependent rect. 3 1
63 174.48 humidity 80 10 < th dose independent rect. 7 1
82 176.60 radiation 10 30 > th dose independent rect. 7 1
87 177.27 wind 7 90 > th dose independent rect. 1 8
88 177.37 wind 7 90 > th dose independent rect. 4 5
89 177.37 wind 7 90 > th dose dependent rect. 1 8
93 177.51 wind 7 90 > th dose dependent rect. 3 6
95 177.54 wind 7 90 > th dose independent rect. 7 2
99 177.60 wind 7 90 > th dose dependent rect. 7 2
110 177.79 radiation 10 10 > th dose independent rect. 16 16
159 178.99 atmosphere 1005 30 > th dose independent rect. 2 7
188 179.35 temperature 20 10 < th dose dependent rect. 3 1
196 179.49 temperature 25 10 > th dose dependent rect. 7 1
202 179.58 atmosphere 1000 720 > th dose independent rect. 17 4
203 179.67 radiation 10 10 > th dose independent sin 12 NA
226 180.06 humidity 90 90 < th dose dependent rect. 14 19
229 180.10 atmosphere 1010 10 < th dose dependent rect. 14 10
246 180.57 humidity 90 90 < th dose independent rect. 14 18
248 180.68 humidity 90 270 < th dose independent rect. 12 20
251 180.73 atmosphere 995 720 > th dose dependent rect. 18 2
252 180.74 atmosphere 1010 1440 < th dose dependent rect. 14 1
261 180.98 atmosphere 995 720 > th dose dependent rect. 16 4
276 181.15 atmosphere 1000 270 > th dose independent rect. 17 12
283 181.22 humidity 80 720 < th dose independent rect. 7 1
299 181.46 atmosphere 1005 90 > th dose independent rect. 2 2
301 181.47 humidity 90 90 < th dose independent rect. 2 17
338 181.79 radiation 20 720 > th dose dependent rect. 16 15
339 181.80 atmosphere 1000 90 > th dose independent rect. 19 11
343 181.82 radiation 20 720 > th dose dependent rect. 16 1
361 181.89 atmosphere 1000 10 > th dose independent sin 13 NA
376 181.95 temperature 20 90 < th dose independent rect. 2 2
381 181.96 atmosphere 995 1440 > th dose dependent rect. 14 1
384 181.97 atmosphere 995 1440 > th dose independent rect. 18 9
398 182.03 temperature 30 720 > th dose dependent rect. 14 1
399 182.03 atmosphere 995 720 > th dose dependent rect. 14 6
401 182.04 temperature 30 720 > th dose dependent rect. 13 4
409 182.09 atmosphere 1000 10 > th dose dependent rect. 2 7
426 182.16 humidity 50 720 > th dose dependent rect. 24 20
436 182.20 atmosphere 1010 720 < th dose dependent rect. 12 11
439 182.22 humidity 70 90 < th dose independent rect. 14 20
442 182.23 atmosphere 1000 720 < th dose independent rect. 17 3
483 182.36 atmosphere 995 720 > th dose independent rect. 8 22
523 182.49 atmosphere 1000 30 < th dose dependent sin 13 NA
593 182.63 temperature 25 10 > th dose dependent rect. 14 19
600 182.64 atmosphere 1000 90 > th dose independent rect. 8 23
602 182.65 temperature 30 720 < th dose independent rect. 10 19
605 182.65 atmosphere 1010 30 < th dose dependent rect. 14 13
607 182.66 temperature 30 1440 < th dose dependent rect. 14 2
613 182.67 atmosphere 995 720 > th dose independent rect. 10 19
616 182.67 temperature 20 30 > th dose dependent rect. 14 13
641 182.70 temperature 30 720 > th dose dependent sin 21 NA
645 182.70 humidity 90 90 < th dose dependent rect. 14 14
651 182.71 radiation 1 720 > th dose dependent rect. 15 17
689 182.74 humidity 80 720 > th dose dependent rect. 24 20
707 182.77 atmosphere 1000 30 < th dose independent sin 14 NA
726 182.78 atmosphere 1005 270 > th dose independent rect. 23 9
727 182.78 atmosphere 1000 10 < th dose independent rect. 16 10
737 182.80 temperature 20 720 > th dose dependent rect. 12 5
781 182.83 humidity 70 10 < th dose independent rect. 15 19
804 182.84 temperature 30 720 > th dose dependent no NA NA
900 182.85 atmosphere 1000 90 < th dose independent rect. 17 10
902 182.85 temperature 10 1440 > th dose dependent rect. 14 2
909 182.85 temperature 10 720 > th dose dependent rect. 4 14
924 182.88 temperature 10 720 > th dose dependent rect. 6 11
944 182.91 atmosphere 1000 10 > th dose independent rect. 8 23
947 182.92 temperature 30 90 < th dose independent rect. 16 14
952 182.92 temperature 20 720 > th dose dependent rect. 6 12
996 182.97 atmosphere 995 720 > th dose independent rect. 22 23
1000 182.97 temperature 10 720 > th dose dependent rect. 10 7