BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0242800 Os11g0242800|AK061295
(283 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0242800 Similar to ASCAB9-A (ASCAB9-B) (Fragment) 514 e-146
Os09g0346500 Similar to Chlorophyll a-b binding protein, ch... 195 3e-50
Os01g0600900 Chlorophyll a-b binding protein 2, chloroplast... 194 5e-50
Os03g0592500 Similar to Photosystem II type II chlorophyll ... 192 2e-49
Os01g0720500 Similar to Type I chlorophyll a/b-binding prot... 192 3e-49
Os07g0562700 Similar to Type III chlorophyll a/b-binding pr... 182 3e-46
AK058312 181 5e-46
Os09g0296800 Chlorophyll A-B binding protein family protein 162 3e-40
Os06g0320500 Similar to Light-harvesting complex I (Fragment) 136 2e-32
AK060800 136 2e-32
Os02g0764500 Similar to Lhca5 protein 132 2e-31
D85512 127 7e-30
Os07g0577600 Similar to Type II chlorophyll a/b binding pro... 121 5e-28
Os09g0439500 Similar to Type II chlorophyll a/b binding pro... 119 2e-27
Os08g0435900 Similar to LHC I type IV chlorophyll binding p... 117 1e-26
Os07g0558400 Similar to Chlorophyll a/b-binding protein CP2... 115 4e-26
Os02g0197600 Similar to PSI type III chlorophyll a/b-bindin... 77 1e-14
>Os11g0242800 Similar to ASCAB9-A (ASCAB9-B) (Fragment)
Length = 283
Score = 514 bits (1325), Expect = e-146, Method: Compositional matrix adjust.
Identities = 258/283 (91%), Positives = 258/283 (91%)
Query: 1 MAALAPSKMLGTRLNFAGSSRYATAAPTTGAQKIVSLFSXXXXXXXXXXXVTSSSPDIGD 60
MAALAPSKMLGTRLNFAGSSRYATAAPTTGAQKIVSLFS VTSSSPDIGD
Sbjct: 1 MAALAPSKMLGTRLNFAGSSRYATAAPTTGAQKIVSLFSKKPAPKPKPAAVTSSSPDIGD 60
Query: 61 ELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIH 120
ELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIH
Sbjct: 61 ELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIH 120
Query: 121 ARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIXXXXX 180
ARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLI
Sbjct: 121 ARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAA 180
Query: 181 XXXXXXXXXYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSML 240
YYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSML
Sbjct: 181 EVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSML 240
Query: 241 GFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVISGAAERTPSL 283
GFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVISGAAERTPSL
Sbjct: 241 GFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVISGAAERTPSL 283
>Os09g0346500 Similar to Chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP)
Length = 265
Score = 195 bits (495), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 132/209 (63%), Gaps = 9/209 (4%)
Query: 65 WYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWA 124
WYG DR ++L G L E P YL GE PGDYG+D GLS PE F+K + E+IH+RWA
Sbjct: 49 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 125 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPIN---LIXXXXXX 181
MLGA G + PE + G G EAVWFK G+ + L+Y GN I+ ++
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQ 164
Query: 182 XXXXXXXXYYRIINGL--DLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSM 239
YRI G ++ D L+PGG FDPLGLA DP+ A LKVKEIKNGRLAMFSM
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 224
Query: 240 LGFFIQAYVTGEGPVENLSKHLSDPFGNN 268
GFF+QA VTG+GP+ENL+ HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>Os01g0600900 Chlorophyll a-b binding protein 2, chloroplast precursor (LHCII
type I CAB-2) (LHCP)
Length = 261
Score = 194 bits (493), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 109/222 (49%), Positives = 137/222 (61%), Gaps = 9/222 (4%)
Query: 52 TSSSPDIGDELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFS 111
+++ P + WYG DR ++L G L E P YL GE PGDYG+D GLS PE F+
Sbjct: 32 SAAKPKPAASGSPWYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFA 88
Query: 112 KYQAYELIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIP 171
K + E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y GN
Sbjct: 89 KNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSL 147
Query: 172 IN---LIXXXXXXXXXXXXXXYYRIINGL--DLEDKLHPGGPFDPLGLASDPDQAALLKV 226
I+ ++ YRI G ++ D L+PGG FDPLGLA DP+ A LKV
Sbjct: 148 IHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKV 207
Query: 227 KEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNN 268
KEIKNGRLAMFSM GFF+QA VTG+GP+ENL+ HL+DP NN
Sbjct: 208 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 249
>Os03g0592500 Similar to Photosystem II type II chlorophyll a/b binding protein
(Fragment)
Length = 263
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/210 (51%), Positives = 132/210 (62%), Gaps = 11/210 (5%)
Query: 65 WYGPDRRIFLPEGLLDRSE-VPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARW 123
WYGPDR P+ L SE P YL GE PGDYG+D GLS PE F++ + E+IH+RW
Sbjct: 47 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRW 102
Query: 124 AMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPIN---LIXXXXX 180
AMLGA G + PE +K G G EAVWFK GA + L+Y GN ++ ++
Sbjct: 103 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAV 161
Query: 181 XXXXXXXXXYYRIINGLDLE--DKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFS 238
YR+ G E DK++PGG FDPLGLA DPD A LKVKE+KNGRLAMFS
Sbjct: 162 QVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFS 221
Query: 239 MLGFFIQAYVTGEGPVENLSKHLSDPFGNN 268
M GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 222 MFGFFVQAIVTGKGPIENLFDHVADPVANN 251
>Os01g0720500 Similar to Type I chlorophyll a/b-binding protein b (Fragment)
Length = 265
Score = 192 bits (487), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 131/209 (62%), Gaps = 9/209 (4%)
Query: 65 WYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWA 124
WYG DR ++L G L E P YL GE PGDYG+D GLS PE F+K + E+IH RWA
Sbjct: 49 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 125 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPIN---LIXXXXXX 181
MLGA G + PE + G G EAVWFK G+ + L+Y GN I+ ++
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQ 164
Query: 182 XXXXXXXXYYRIINGL--DLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSM 239
YR+ G ++ D L+PGG FDPLGLA DP+ A LKVKEIKNGRLAMFSM
Sbjct: 165 VVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 224
Query: 240 LGFFIQAYVTGEGPVENLSKHLSDPFGNN 268
GFF+QA VTG+GP+ENL+ HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>Os07g0562700 Similar to Type III chlorophyll a/b-binding protein (Fragment)
Length = 266
Score = 182 bits (461), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 127/210 (60%), Gaps = 9/210 (4%)
Query: 65 WYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWA 124
WYGPDR +L ++ P YL GE PGDYG+D GLS PE F++ +A E+IH RWA
Sbjct: 48 WYGPDRVKYLGP---FSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 104
Query: 125 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPIN---LIXXXXXX 181
MLGA G I PE K+ E VWFK GA + L+Y GN ++ ++
Sbjct: 105 MLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQ 164
Query: 182 XXXXXXXXYYRI--INGLDLEDKLHPGGP-FDPLGLASDPDQAALLKVKEIKNGRLAMFS 238
YRI + G+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMFS
Sbjct: 165 VVLMGLVEGYRINGLPGVGDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 224
Query: 239 MLGFFIQAYVTGEGPVENLSKHLSDPFGNN 268
M GFF+QA VTG+GP+ENL HL+DP NN
Sbjct: 225 MFGFFVQAIVTGKGPLENLLDHLADPVANN 254
>AK058312
Length = 266
Score = 181 bits (460), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 127/210 (60%), Gaps = 9/210 (4%)
Query: 65 WYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWA 124
WYGPDR +L ++ P YL GE PGDYG+D GLS PE F++ +A E+IH RWA
Sbjct: 48 WYGPDRVKYLGP---FSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 104
Query: 125 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPIN---LIXXXXXX 181
MLGA G I PE K+ E VWFK GA + L+Y GN ++ ++
Sbjct: 105 MLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQ 164
Query: 182 XXXXXXXXYYRI--INGLDLEDKLHPGGP-FDPLGLASDPDQAALLKVKEIKNGRLAMFS 238
YRI + G+ + L+PGG FDPLGLA DP A LKVKEIKNGRLAMFS
Sbjct: 165 VVLMGLVEGYRINGLPGVGDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 224
Query: 239 MLGFFIQAYVTGEGPVENLSKHLSDPFGNN 268
M GFF+QA VTG+GP+ENL HL+DP NN
Sbjct: 225 MFGFFVQAIVTGKGPLENLLDHLADPVNNN 254
>Os09g0296800 Chlorophyll A-B binding protein family protein
Length = 321
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 101/235 (42%), Positives = 129/235 (54%), Gaps = 29/235 (12%)
Query: 53 SSSPDIGDELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSK 112
++S GDE +W GP +P E P +L GE PGDYG+D GL + P F+
Sbjct: 97 TASSWYGDERPRWLGP-----VP------YEYPAHLTGEYPGDYGFDIAGLGRDPVAFAN 145
Query: 113 YQAYELIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIP- 171
Y +E++H RWAML A G ++PE + FG E VW+K G L G+TL+Y G IP
Sbjct: 146 YFNFEILHCRWAMLAALGVVVPELLDLFGVVHFVEPVWWKVGYAKLQGDTLDYLG--IPG 203
Query: 172 ------INLIXXXXXXXXXXXXXXYYRIINGLDLE--------DKLHPGGP-FDPLGLAS 216
+I Y R LE D +PGG FDPLGL+
Sbjct: 204 FRIAGGQGVIVIAICQALLMVGPEYARYCGIEALEPLGLYLPGDINYPGGALFDPLGLSK 263
Query: 217 DPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNNLLT 271
DP LKVKEIKNGRLAM + LGF+IQA VTG+GP++NL +HLSDP NN+L+
Sbjct: 264 DPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNNILS 318
>Os06g0320500 Similar to Light-harvesting complex I (Fragment)
Length = 241
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 103/191 (53%), Gaps = 10/191 (5%)
Query: 85 PDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 144
P +L+G PGD+G+DP GL+ PE+F +++ E+ H RWAML G ++PEA
Sbjct: 52 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGL----- 106
Query: 145 GPEAVWFKTGALLLD-GNTLNYFGNSIPINLIXXXXXXXXXXXXXXYYRIINGLDLEDKL 203
W + + G Y GN +P + ++ D E K
Sbjct: 107 ---GNWVQAQEWAAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPEKKK 163
Query: 204 HPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFI-QAYVTGEGPVENLSKHLS 262
+PGG FDPLG + DP + K+KEIKNGRLAM + +GF + Q+ G GP+ENL+ HLS
Sbjct: 164 YPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLS 223
Query: 263 DPFGNNLLTVI 273
DP+ NN+ +I
Sbjct: 224 DPWHNNIGDII 234
>AK060800
Length = 241
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 103/191 (53%), Gaps = 10/191 (5%)
Query: 85 PDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 144
P +L+G PGD+G+DP GL+ PE+F +++ E+ H RWAML G ++PEA
Sbjct: 52 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGL----- 106
Query: 145 GPEAVWFKTGALLLD-GNTLNYFGNSIPINLIXXXXXXXXXXXXXXYYRIINGLDLEDKL 203
W + + G Y GN +P + ++ D E K
Sbjct: 107 ---GNWVQAQEWAAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPEKKK 163
Query: 204 HPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFI-QAYVTGEGPVENLSKHLS 262
+PGG FDPLG + DP + K+KEIKNGRLAM + +GF + Q+ G GP+ENL+ HLS
Sbjct: 164 YPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLS 223
Query: 263 DPFGNNLLTVI 273
DP+ NN+ +I
Sbjct: 224 DPWHNNIGDII 234
>Os02g0764500 Similar to Lhca5 protein
Length = 261
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 111/208 (53%), Gaps = 26/208 (12%)
Query: 85 PDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 144
P +L+G +PGD+G+DP GL ++P + Y EL+H R+AM G AG + + G N
Sbjct: 64 PPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSGINN 123
Query: 145 GPEAVWFKTGALLLDGNTLNYFGNSIPINLIXXXXXXXXXXXXXXYYRIING-------- 196
P VWF+ GA D F N+ + + Y IN
Sbjct: 124 LP--VWFEAGATKFD------FANTTALFFVQLLLMGFAETKR--YMDFINPGSQAEEGT 173
Query: 197 -LDLEDKL------HPGGP-FDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYV 248
L +E L +PGGP F+PLGLA D + A K+KEIKNGRLAM +MLGF +QA V
Sbjct: 174 FLGIEAALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQASV 233
Query: 249 TGEGPVENLSKHLSDPFGNNLLTVISGA 276
T GP++NL HLSDPF N++ +S +
Sbjct: 234 THVGPIDNLLTHLSDPFNKNIIHTLSSS 261
>D85512
Length = 124
Score = 127 bits (320), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 62/64 (96%), Positives = 63/64 (98%)
Query: 220 QAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVISGAAER 279
Q ALLK+KEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVISGAAER
Sbjct: 61 QTALLKLKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVISGAAER 120
Query: 280 TPSL 283
TPSL
Sbjct: 121 TPSL 124
>Os07g0577600 Similar to Type II chlorophyll a/b binding protein from photosystem
I precursor
Length = 263
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 102/207 (49%), Gaps = 21/207 (10%)
Query: 68 PDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLG 127
PDR I+ P S P +L+G +PGD+G+DP GL PE EL+H RWAMLG
Sbjct: 56 PDRPIWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLG 110
Query: 128 AAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIXXXXXXXXXXXX 187
AAG IPE K G P W+ G +T F I LI
Sbjct: 111 AAGIFIPEFLTKIGILNTPS--WYTAGEQQYFTDTTTLF----IIELILIGWAEGRRWAD 164
Query: 188 XXYYRIING--------LDLEDKLHPGG-PFDPLGLAS-DPDQAALLKVKEIKNGRLAMF 237
+N L D +PGG FDPLG + P++ L+ KEIKNGRLAM
Sbjct: 165 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAML 224
Query: 238 SMLGFFIQAYVTGEGPVENLSKHLSDP 264
+++G + QA TG GP++NL HL+DP
Sbjct: 225 AVMGAWFQAEYTGTGPIDNLFAHLADP 251
>Os09g0439500 Similar to Type II chlorophyll a/b binding protein from photosystem
I precursor
Length = 264
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 109/223 (48%), Gaps = 31/223 (13%)
Query: 67 GPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAML 126
GPDR ++ P S P +L+G +PGD+G+DP GL PE + EL+H+RWAML
Sbjct: 56 GPDRPLWFPG-----SSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAML 110
Query: 127 GAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIXXXXXXXXXXX 186
AG ++PE K+G F +D +YF + P L
Sbjct: 111 AVAGILVPEVLEKWG---------FMEDYSWIDAGARDYFAD--PWTLFVSQMALMGWAE 159
Query: 187 XXXYYRIIN--GLDLEDKL-----------HPGGPFDPLGL--ASDPDQAALLKVKEIKN 231
+ +N + +E +L +PGG + G P+ +L+ KEIKN
Sbjct: 160 GRRWADYLNPGCVAVEPRLPNRRNPVPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEIKN 219
Query: 232 GRLAMFSMLGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVIS 274
GRLAM + +GF+ QA TGEGP++NL HL+DP N+ + +
Sbjct: 220 GRLAMLAFVGFWFQAVYTGEGPIDNLLHHLADPGHCNVFSAFT 262
>Os08g0435900 Similar to LHC I type IV chlorophyll binding protein (Fragment)
Length = 244
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 105/204 (51%), Gaps = 28/204 (13%)
Query: 85 PDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANC 144
P YLNG +PGD G+DP GL++ PE+ + EL++ RWAMLG AG ++PE K G
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 145 GPEAVWFKTGALLLDGNTLNYFGNSIPINLIXXXXXXXXXXXXXXYYRIIN-GLDLEDKL 203
P+ W+ D YF +S + +I + I N G +D +
Sbjct: 116 APQ--WY-------DAGKATYFASSSTLFVI--EFILFHYVEIRRWQDIKNPGCVNQDPI 164
Query: 204 ------------HPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGE 251
+PG F+PL +P A K KE+ NGRLAM + LGF +Q VT +
Sbjct: 165 FKSYSLPPHECGYPGSVFNPLNF--EPTLEA--KEKELANGRLAMLAFLGFLVQHNVTQK 220
Query: 252 GPVENLSKHLSDPFGNNLLTVISG 275
GP +NL +HLSDP+ N ++ +SG
Sbjct: 221 GPFDNLLQHLSDPWHNTIIQTLSG 244
>Os07g0558400 Similar to Chlorophyll a/b-binding protein CP29 precursor
Length = 290
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 113/254 (44%), Gaps = 61/254 (24%)
Query: 69 DRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPE-------------------- 108
DR ++ P + PDYL+G + GDYG+DPFGL K E
Sbjct: 53 DRPLWFPGAV-----APDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNNAGE 107
Query: 109 -----------------------DFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANCG 145
+++ ELIH RWAML G + E
Sbjct: 108 IIGTRFETGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG------ 161
Query: 146 PEAVWFKTGAL-LLDGNTLNYFGNSIPINLIXXXXXXXXXXXXXXYYRIINGLDLEDKLH 204
W G + L+DG++ Y G +P ++ + R LD E +L+
Sbjct: 162 --VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDPEKRLY 216
Query: 205 PGGP-FDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLSD 263
PGG FDPLGLASDP++ L++ EIK+ RLAM + LGF +QA TG+GP+ N + HLSD
Sbjct: 217 PGGSYFDPLGLASDPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSD 276
Query: 264 PFGNNLLTVISGAA 277
P + S ++
Sbjct: 277 PLHTTIFDTFSSSS 290
>Os02g0197600 Similar to PSI type III chlorophyll a/b-binding protein
Length = 180
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 2/73 (2%)
Query: 204 HPGGP-FDPLGLASDPD-QAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHL 261
+PGGP F+PLG + + + LK+KEIKNGRLAM + LGF +QA TG GPV+NL HL
Sbjct: 106 YPGGPLFNPLGFGTKSEAEMKELKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHL 165
Query: 262 SDPFGNNLLTVIS 274
+DP NN+LT +
Sbjct: 166 ADPVHNNILTSLK 178
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.139 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,883,727
Number of extensions: 408787
Number of successful extensions: 701
Number of sequences better than 1.0e-10: 17
Number of HSP's gapped: 664
Number of HSP's successfully gapped: 21
Length of query: 283
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 183
Effective length of database: 11,814,401
Effective search space: 2162035383
Effective search space used: 2162035383
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)