BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0409900 Os10g0409900|AK068671
(442 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0409900 Cyclin-like F-box domain containing protein 845 0.0
Os03g0167800 Cyclin-like F-box domain containing protein 705 0.0
Os02g0202900 Cyclin-like F-box domain containing protein 431 e-121
Os10g0363600 Cyclin-like F-box domain containing protein 125 9e-29
Os02g0114600 Cyclin-like F-box domain containing protein 115 6e-26
Os07g0153400 Cyclin-like F-box domain containing protein 115 7e-26
Os02g0574900 Cyclin-like F-box domain containing protein 110 3e-24
Os02g0504900 Cyclin-like F-box domain containing protein 99 6e-21
Os03g0171600 Cyclin-like F-box domain containing protein 97 2e-20
Os04g0380300 Cyclin-like F-box domain containing protein 96 4e-20
Os10g0388200 Cyclin-like F-box domain containing protein 92 7e-19
Os04g0619300 Cyclin-like F-box domain containing protein 90 4e-18
Os02g0748300 Similar to VMP3 protein 85 1e-16
Os11g0602800 Galactose oxidase, central domain containing p... 80 3e-15
>Os10g0409900 Cyclin-like F-box domain containing protein
Length = 442
Score = 845 bits (2184), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/417 (97%), Positives = 407/417 (97%)
Query: 26 LVESVSCYCRLDTGLKTVVDARKFVPGAKMCMQPDVKPNKCKSRGSRKERSRTQAXXXXX 85
LVESVSCYCRLDTGLKTVVDARKFVPGAKMCMQPDVKPNKCKSRGSRKERSRTQA
Sbjct: 26 LVESVSCYCRLDTGLKTVVDARKFVPGAKMCMQPDVKPNKCKSRGSRKERSRTQAPLLPG 85
Query: 86 XXXXXAIACLIRVPRVEHPNLRIVCKRWNRLLSGNYYYSLRKRNGMAEEWVYVFKRDREG 145
AIACLIRVPRVEHPNLRIVCKRWNRLLSGNYYYSLRKRNGMAEEWVYVFKRDREG
Sbjct: 86 LPDDLAIACLIRVPRVEHPNLRIVCKRWNRLLSGNYYYSLRKRNGMAEEWVYVFKRDREG 145
Query: 146 KISWHAFDPLHQLWKSLPPVPAEYSEALGFGCAVLSGCYLYLFGGKDPLRGSMRRVVFYN 205
KISWHAFDPLHQLWKSLPPVPAEYSEALGFGCAVLSGCYLYLFGGKDPLRGSMRRVVFYN
Sbjct: 146 KISWHAFDPLHQLWKSLPPVPAEYSEALGFGCAVLSGCYLYLFGGKDPLRGSMRRVVFYN 205
Query: 206 ARTNKWHRAPDMLRKRHFFGSCVINNCLYVAGGECEGIQRTLPSAEVYDPNRNRWACVAE 265
ARTNKWHRAPDMLRKRHFFGSCVINNCLYVAGGECEGIQRTLPSAEVYDPNRNRWACVAE
Sbjct: 206 ARTNKWHRAPDMLRKRHFFGSCVINNCLYVAGGECEGIQRTLPSAEVYDPNRNRWACVAE 265
Query: 266 MNNGMVPFIGVVYDGKWFLKGLDSHRQVTSEVYLPSSNLWSTIDDEMVTGWRNPSITFNG 325
MNNGMVPFIGVVYDGKWFLKGLDSHRQVTSEVYLPSSNLWSTIDDEMVTGWRNPSITFNG
Sbjct: 266 MNNGMVPFIGVVYDGKWFLKGLDSHRQVTSEVYLPSSNLWSTIDDEMVTGWRNPSITFNG 325
Query: 326 KLYSSDCRDGCKLRVYDPNTGTWAKFMDSKHHLGSSRAFEAAALVTLNGKLCIVRNNMSI 385
KLYSSDCRDGCKLRVYDPNTGTWAKFMDSKHHLGSSRAFEAAALVTLNGKLCIVRNNMSI
Sbjct: 326 KLYSSDCRDGCKLRVYDPNTGTWAKFMDSKHHLGSSRAFEAAALVTLNGKLCIVRNNMSI 385
Query: 386 TLVDISDPTMSIETDSARMWETVARKGQHRSFVANLWSTIAGRNLKSHIIHCQVLQV 442
TLVDISDPTMSIETDSARMWETVARKGQHRSFVANLWSTIAGRNLKSHIIHCQVLQV
Sbjct: 386 TLVDISDPTMSIETDSARMWETVARKGQHRSFVANLWSTIAGRNLKSHIIHCQVLQV 442
>Os03g0167800 Cyclin-like F-box domain containing protein
Length = 438
Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/417 (79%), Positives = 370/417 (88%)
Query: 26 LVESVSCYCRLDTGLKTVVDARKFVPGAKMCMQPDVKPNKCKSRGSRKERSRTQAXXXXX 85
LVESVSCYCR+D GLKTVV ARKFVPGAK+CMQPD+KPNK KSR S KER RTQA
Sbjct: 22 LVESVSCYCRVDGGLKTVVSARKFVPGAKLCMQPDIKPNKRKSRSSHKERCRTQAPLLPG 81
Query: 86 XXXXXAIACLIRVPRVEHPNLRIVCKRWNRLLSGNYYYSLRKRNGMAEEWVYVFKRDREG 145
AI CL+RVPR+EH NLR+VCKRWNRLLSGNYYYSLRK+ GMAEEWV+VFKRDR+
Sbjct: 82 LPDDLAITCLMRVPRLEHTNLRLVCKRWNRLLSGNYYYSLRKKLGMAEEWVFVFKRDRDR 141
Query: 146 KISWHAFDPLHQLWKSLPPVPAEYSEALGFGCAVLSGCYLYLFGGKDPLRGSMRRVVFYN 205
KISWHAFDP+HQ+WKSLPPVPAEYSEA+GFGCAVLSGCYLYLFGGKDP+RGSMRRVVFYN
Sbjct: 142 KISWHAFDPVHQVWKSLPPVPAEYSEAVGFGCAVLSGCYLYLFGGKDPVRGSMRRVVFYN 201
Query: 206 ARTNKWHRAPDMLRKRHFFGSCVINNCLYVAGGECEGIQRTLPSAEVYDPNRNRWACVAE 265
AR NKW RAPDML+KRH FGSCVINN LYVAGGECEGIQRTL SAE YDPNRNRW+ ++E
Sbjct: 202 ARINKWLRAPDMLQKRHCFGSCVINNRLYVAGGECEGIQRTLRSAEFYDPNRNRWSYISE 261
Query: 266 MNNGMVPFIGVVYDGKWFLKGLDSHRQVTSEVYLPSSNLWSTIDDEMVTGWRNPSITFNG 325
M+ GMVPFIGVVYDGKWFLKGLDSHRQV SEVY+P+SN+WS DEMVTGWRNPSI FNG
Sbjct: 262 MSTGMVPFIGVVYDGKWFLKGLDSHRQVVSEVYMPTSNVWSVTADEMVTGWRNPSICFNG 321
Query: 326 KLYSSDCRDGCKLRVYDPNTGTWAKFMDSKHHLGSSRAFEAAALVTLNGKLCIVRNNMSI 385
+LYS++CRDGCKLRVYD +T +W +FMDS+ HLG+SRAFEAAALV+LNGK+CI+RNNMSI
Sbjct: 322 RLYSAECRDGCKLRVYDRDTRSWTRFMDSRRHLGNSRAFEAAALVSLNGKICIIRNNMSI 381
Query: 386 TLVDISDPTMSIETDSARMWETVARKGQHRSFVANLWSTIAGRNLKSHIIHCQVLQV 442
TLVD+S+ IE ++A MW+ ARKGQHRSF+ANLW TIAGRN K+HIIHCQVLQV
Sbjct: 382 TLVDVSNTPTVIEINNAHMWDVFARKGQHRSFIANLWFTIAGRNFKTHIIHCQVLQV 438
>Os02g0202900 Cyclin-like F-box domain containing protein
Length = 436
Score = 431 bits (1107), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/436 (49%), Positives = 286/436 (65%), Gaps = 29/436 (6%)
Query: 27 VESVSCYCRLDTGLKTVVDARKFVPGAKMCMQPDVK----PNKCKSRGSRKERSRT---- 78
V+S +C CR++ + AR +P AK C QP ++ P K K R R
Sbjct: 10 VDSSACLCRVERSVAGAAAAR-LMPRAKACAQPSLRASIHPLKPKRSPGRDHRGGGGAGG 68
Query: 79 ----QAXXXXXXXXXXAIACLIRVPRVEHPNLRIVCKRWNRLLSGNYYYSLRKRNGMAEE 134
Q A+ACLIRVPR +H LR+VC+RW+RLL+GNY+Y LR+R G+AE+
Sbjct: 69 GGGRQCPLIPGLPDDLAVACLIRVPRGDHWKLRLVCRRWSRLLAGNYFYGLRRRLGLAEQ 128
Query: 135 WVYVFKRDREGKISWHAFDPLHQLWKSLPPVPAEYSEALGFGCAVLSGCYLYLFGGKDPL 194
WVY KRD EG++SW DP W++LPPVP EY+ A GFGCAVL GC+LYL GG DP
Sbjct: 129 WVYAVKRDGEGRVSWDVLDPARLAWRALPPVPGEYAGAAGFGCAVLGGCHLYLLGGSDPR 188
Query: 195 RGSMRRVVFYNARTNKWHRAPDMLRKRHFFGSCVINNCLYVA----GGECEGIQRTLPSA 250
RG MRRVVFY+AR+N+WHRAPDMLR+RH FG CV+ N LYVA G G L S
Sbjct: 189 RGPMRRVVFYSARSNRWHRAPDMLRRRHGFGCCVMGNRLYVAGGEGCGVGGGGGGGLRSV 248
Query: 251 EVYDPNRNRWACVAEMNNGMVPFIGVVYDGKWFLKGLDSHRQVTSEVYLPSSNLWSTID- 309
EV+DP +NRW+ V++M ++PF+ V+ G+W++KGL + RQV S+VY P ++ WS
Sbjct: 249 EVFDPAKNRWSFVSDMAASLMPFVSAVHGGRWYVKGLGAQRQVMSQVYSPEADAWSAAHE 308
Query: 310 -DEMVTGWRNPSITFNGKLYSSDCRDGCKLRVYDPNTGTWAKFMDSKHHLGSSRAFEAAA 368
D MVTGWR+PS + G+LY++DC+DGC+LR YD G W+ +D H GSS A EAAA
Sbjct: 309 LDAMVTGWRSPSASLGGRLYAADCKDGCRLRAYDEAAGAWSGRVDGGQHAGSSHAVEAAA 368
Query: 369 LVTLNGKLCIVRNNMSITLVDISDPTMSIETDSARMWETVARKGQHRSFVANLWSTIAG- 427
+V L+GKLC+VRN+MS+++VD++ ++ WETV KGQ ++FVANL S IAG
Sbjct: 369 MVALHGKLCVVRNDMSVSVVDVA--------AASPRWETVVGKGQMKAFVANLLSAIAGG 420
Query: 428 -RNLKSHIIHCQVLQV 442
K+ ++HCQVL+
Sbjct: 421 RGRAKNRVLHCQVLEA 436
>Os10g0363600 Cyclin-like F-box domain containing protein
Length = 475
Score = 125 bits (313), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 114/430 (26%), Positives = 180/430 (41%), Gaps = 86/430 (20%)
Query: 91 AIACLIRVPRVEHPNLRIVCKRWNRLLSGNYYYSLRKRNGMAEEWVYVFKRDREGKISWH 150
++ L R+PR+ + N ++V + W ++G Y +RK G++EEW+Y+ + +GK+ W+
Sbjct: 54 SLQILARMPRMGYLNAKMVSRSWKAAITGVELYRVRKELGVSEEWLYMLTKSDDGKLVWN 113
Query: 151 AFDPLHQLWKSLPPVPA-------------------------------------EYSEAL 173
AFDP+ W+ LP +P + + L
Sbjct: 114 AFDPVCGQWQRLPLMPGISHGGECKRGIPGLWLGDLLSAGIRVSDVIRGWLGQRDSLDRL 173
Query: 174 GF-GCAV--LSGCYLYLFGGKDPLRGSMRRVVF-YNARTNKWHRAPDMLRKRHFFGSCVI 229
F GCA+ ++GC +Y+ GG RGS + V+ Y+ N W M R F + ++
Sbjct: 174 PFCGCAIGTVNGC-IYVLGGFS--RGSAMKCVWRYDPFVNAWQEVSSMSTGRAFCKASLL 230
Query: 230 NNCLYVAGGECEGIQRTLP--SAEVYDPNRNRW----------------ACVAEM----N 267
NN LYV GG +G P SAEV+DP W A +AE+
Sbjct: 231 NNKLYVVGGVSKGKNGLAPLQSAEVFDPRTGIWVEVPDIPFSKAQALPTAFLAELLKPIA 290
Query: 268 NGMVPFIGVVYDGKWFLKGLDSHRQVTSEVYLPSSNLWSTIDDEMVTGW------RNPSI 321
GM F G +Y + L V E++ P +N W+ + M GW S
Sbjct: 291 TGMTSFGGKLYVPQ-SLYSWPFFVDVGGEIFDPETNSWAEMPVGMGEGWPARQAGTKLSA 349
Query: 322 TFNGKLYS---SDCRDGCKLRVYDPNTGTWAKFMDSKHHLGSSRAFE-----AAALVTLN 373
+G LY+ S D K+++YDP W K + +G E A L LN
Sbjct: 350 VIDGDLYALEPSTSSDRGKIKIYDPQEDAW-KVAIGQVPVGDFAESECPYLLAGFLGKLN 408
Query: 374 GKLCIVRNNMSITLVDISDPTMSIETDSARMWETVARKGQHRSFVANLWSTIAGRNL-KS 432
+ V + ++I D+ P +E + T + NLW I +NL +
Sbjct: 409 LIIKDVDSKINIMQTDVLKP---VELSAPGNGPTCQNQQLSSEQETNLWKVIVSKNLAAA 465
Query: 433 HIIHCQVLQV 442
++ CQVL +
Sbjct: 466 ELVSCQVLNI 475
>Os02g0114600 Cyclin-like F-box domain containing protein
Length = 360
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 134/310 (43%), Gaps = 25/310 (8%)
Query: 91 AIACLIRVPRVEHPNLRIVCKRWNRLLSGNYYYSLRKRNGMAEEWVYVFKRDREGKISWH 150
AI CL RVPR H LR V KRW LLS ++S RKRN + E WVYV R K
Sbjct: 34 AILCLARVPRRYHNALRCVSKRWRALLSSEEWHSCRKRNNLDEPWVYVICRSTGIKCYVL 93
Query: 151 AFDPLHQLWKSLPPVPAEYSEALGFGCAVLSGCYLYLFGGKDPLRGSMRRVVFYNARTNK 210
A DP + K + + S G L L+L GG L+ + V Y+A +N
Sbjct: 94 APDPTTRSLKIMQVIEPPCSSREGISIETLDK-RLFLLGGCSWLKDANDEVFCYDASSNC 152
Query: 211 WHRAPDMLRKRHFFGSCVINNCLYVAGGECEGIQRTLPSA-EVYDPNRNRWACVAE---M 266
W M R +F S ++ LY+ GG G+ P++ ++YDP N W CV + +
Sbjct: 153 WSSVAPMPTARCYFVSAALDKKLYITGG--LGLTDKSPNSWDIYDPVTNSW-CVHKNPML 209
Query: 267 NNGMVPFIGV------VYDGKWFLKGLDSHRQVTSEVYLPSSNLWSTIDDEMVTGWRNPS 320
+V F+ + V+ W +R + +Y P W ++E+ W +
Sbjct: 210 TPDIVKFVALDGELVTVHKAAW-------NRMYFAGIYDPLCRTWRGTENEIALCWSGST 262
Query: 321 ITFNGKLYSSDCRDGCKLRVYDPNTGTWAKFMDSKHHLGSSRAFEAAALVTLNGKLCIVR 380
+ +G LY + G KL ++ T W L LV + K+ I+
Sbjct: 263 VVMDGTLYMLEQSLGTKLMMWQKETKEWIML----GRLSDKLTRPPCELVGIGRKIYIIG 318
Query: 381 NNMSITLVDI 390
+SI +D+
Sbjct: 319 RGLSIVTIDL 328
>Os07g0153400 Cyclin-like F-box domain containing protein
Length = 406
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 131/305 (42%), Gaps = 12/305 (3%)
Query: 91 AIACLIRVPRVEHPNLRIVCKRWNRLLSGNY-YYSLRKRNGMAEEWVYVFKRDR-EGKIS 148
A+ CL+R+P H R+VC+RW+ LL+ ++ RK G ++ R GKI
Sbjct: 62 ALNCLLRLPVETHEACRLVCRRWHHLLADKARFFMQRKVMGFRSPLLFTLAFHRCTGKIQ 121
Query: 149 WHAFDPLHQLWKSLPPVPA-EYSEALGFGCAVL--SGCYLYLFGGKDPLRGSMRRVVFYN 205
W D + W ++P +P + + GFGC + G L G + + V+ Y+
Sbjct: 122 WKVLDLNYLTWHTIPAMPCRDRACPRGFGCVAIPSDGTLLVCGGLVSDMDCPLHLVLKYD 181
Query: 206 ARTNKWHRAPDMLRKRHFFGSCVINNCLYVAGGECEGIQRTLPSAEVYDPNRNRWACVAE 265
N+W ML R FF VI+ +YVAGG Q L SAEV DP + W VA
Sbjct: 182 VYKNRWTVMTRMLAARSFFAGGVIDGRVYVAGGYSTD-QFELNSAEVLDPVKGVWQPVAS 240
Query: 266 MNNGMVPFIGVVYDGKWFLK---GLDSHRQVTSEVYLPSSNLWSTIDDEMVTGWRNPSIT 322
M M V G+ ++ +VY P + W + M GW S+
Sbjct: 241 MGMNMASSDSAVISGRLYVTEGCAWPFFSSPRGQVYDPKIDRWEVMPVGMREGWTGLSVV 300
Query: 323 FNGKLYSSDCRDGCKLRVYDPNTGTWAKFMDSKHHLGSSRAFEAAALVTLNGKLCIVRNN 382
+ L+ + K++VYDP T +W K R + ++ L K+ +V
Sbjct: 301 IDKHLFVISEYERMKVKVYDPETDSWDSV---KGPPMPERIMKPFSVSCLENKIVVVGRG 357
Query: 383 MSITL 387
+ + +
Sbjct: 358 LHVAI 362
>Os02g0574900 Cyclin-like F-box domain containing protein
Length = 460
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 105/431 (24%), Positives = 165/431 (38%), Gaps = 100/431 (23%)
Query: 91 AIACLIRVPRVEHPNLRIVCKRWNRLLSGNYYYSLRKRNGMAEEWVYVFKRDREGKISWH 150
+ L R+PR+ + L++V + W ++ + LR+ G+ EEW+YV + K+ +
Sbjct: 51 SFQILARLPRLYYLKLKLVSQAWKAAITSSELSQLRRELGLTEEWLYVLTKLEPNKLDCY 110
Query: 151 AFDPLHQLWKSLPPVPAEYSEALGFG---------------------------------- 176
A DPL + W+ LPP+P+ SE G
Sbjct: 111 ALDPLFRKWQRLPPMPSFVSEEESTGRTQSSWFQTWNVVGSSIRIADFIKGWFRRRYGLD 170
Query: 177 --------CAVLSGCYLYLFGGKDPLRGSMRRVVF-YNARTNKWHRAPDMLRKRHFFGSC 227
V GC LY+FGG R VF YN N W M+ R F +
Sbjct: 171 QMPFCGCSVGVADGC-LYVFGGFS--RAVALNCVFRYNPCLNVWQEVSPMISGRAFSKAA 227
Query: 228 VINNCLYVAGGECEGIQRTLP--SAEVYDPNRNRWACVAEM------------------- 266
++ + LYV GG G LP S EV+DP W+ + EM
Sbjct: 228 LLQSKLYVVGGVSRGRNGLLPLRSGEVFDPKTGIWSELPEMPFMKAQVLPTAFLADVLKP 287
Query: 267 -NNGMVPFIGVVYDGKWFLKGLDSHRQVTSEVYLPSSNLWSTIDDEMVTGW------RNP 319
GM + G +Y + L + E+Y P N W T+ D + GW
Sbjct: 288 IATGMASYKGKLYVPQ-SLYSWPFFFDIGGEIYDPELNSWETMADGLGDGWPARQAGTKL 346
Query: 320 SITFNGKLYS---SDCRDGCKLRVYDPNTGTWAKFMDSKHHLGSSRAFEAAALVTLNGKL 376
I N +LY+ S D +++ YD TW + + A L L+GK+
Sbjct: 347 GIVVNEELYTLEPSSSLDSGQIKRYDSEQDTWKTIVPQVPVHDFTDAEAPFLLAGLHGKV 406
Query: 377 CIV----RNNMSITLVDISDPTMSIETDSARMWETVARKGQHRSFVANLWSTIAGRNLKS 432
++ NN+ + + + +IE + E + +W+ +A +N S
Sbjct: 407 HVITKEANNNLQVMQAVLQN---NIENSPSE--ENI------------IWNILASKNFGS 449
Query: 433 -HIIHCQVLQV 442
++ CQVL V
Sbjct: 450 AELVSCQVLDV 460
>Os02g0504900 Cyclin-like F-box domain containing protein
Length = 385
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 117/272 (43%), Gaps = 22/272 (8%)
Query: 91 AIACLIRVPRVEHPNLRIVCKRWNRLLSGNYYYSLRKRNGMAEEWVYVFKRDREGKIS-W 149
A CL VPR + P + V KRW L + ++RK G EEWVYV D K S W
Sbjct: 57 AKICLALVPRSQFPVMGSVSKRWMSFLESKEFIAVRKEVGKLEEWVYVLTADAGSKGSHW 116
Query: 150 HAFDPLHQLWKSLPPVPAEYSEALGFGCAVLSGCYLYLFG-----GKDPLRGSMRRVVFY 204
Q LPP+P GFG VL G + G GK+ + + R Y
Sbjct: 117 EVLGCSGQKHSPLPPMPGPTKA--GFGVVVLDGKLFVIAGYAADHGKECVSDEVYR---Y 171
Query: 205 NARTNKWHRAPDMLRKRHFFGSCVINNCLYVAGGECEGIQRTLPSAEVYDPNRNRWACVA 264
++ N+W M R F +N +YVAGG +L S EVYD +N+W +
Sbjct: 172 DSCLNRWVELSKMNVARCDFACAEVNGMIYVAGGFGPN-GDSLSSVEVYDAEQNKWTLIE 230
Query: 265 EMNNGMVPFIGVVYDGKWFLKGLDSHRQVTS----EVYLPSSNLWSTIDDE--MVTGWRN 318
+ ++GK ++ G S + + +VY P+ N W + + MVT
Sbjct: 231 SLRRPRWGCFACSFEGKLYVMGGRSRFTIGNTRFVDVYNPNDNSWGEVKNGCVMVTA--- 287
Query: 319 PSITFNGKLYSSDCRDGCKLRVYDPNTGTWAK 350
+ KL+ + ++ L V++P +W K
Sbjct: 288 -HAVLDKKLFCIEWKNQRSLAVFNPADNSWQK 318
>Os03g0171600 Cyclin-like F-box domain containing protein
Length = 431
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 123/266 (46%), Gaps = 23/266 (8%)
Query: 92 IACLIRVPRVEHPNLRIVCKRWNRLLSGNYYYSLRKRNGMAEEWVYVFKRDREGKISWHA 151
I CL+R+ R ++ ++ + K + L+ Y LR+++G+AE WVY E W A
Sbjct: 105 INCLLRLSRSDYGSVASLNKDFRSLVRNGEIYRLRRQSGVAEHWVYFSCNVLE----WDA 160
Query: 152 FDPLHQLWKSLPPVPAEYSEALGFGCAVLSGCYLYLFGGKDPLRGSMRRVVF-YNARTNK 210
+DP + W +P +P + ++ G L +F +M +VF Y+ TN
Sbjct: 161 YDPYRERWIQVPKMPPDECFMCSDKESLAVGTELLVF--------AMAHIVFRYSILTNS 212
Query: 211 WHRAPDMLRKRHFFGSCVINNCLYVAGGECEGIQRTLPSAEVYDPNRNRWACVAEMNNGM 270
W RA M+ R FGS + YVAGG + R L SAE+YD + W + MN
Sbjct: 213 WTRADPMISPRCLFGSTSVGAKAYVAGG-TDSSGRILSSAEMYDSETHSWTPLPSMNRAR 271
Query: 271 VPFIGVVYDGKWF-LKGLDSHRQVTS--EVYLPSSNLWSTIDD-----EMVTGWRNPSIT 322
GV DGK++ + G+ S+ +V + E Y W I++ VTG
Sbjct: 272 KMCSGVFMDGKFYVVGGVASNNKVLTCGEEYDLKRRSWRVIENMSEGLNGVTGAPPLIAV 331
Query: 323 FNGKLYSSDCRDGCKLRVYDPNTGTW 348
N +LY++D + ++ YD W
Sbjct: 332 VNNELYAADYSEK-DVKKYDKQNNKW 356
>Os04g0380300 Cyclin-like F-box domain containing protein
Length = 375
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 129/298 (43%), Gaps = 22/298 (7%)
Query: 91 AIACLIRVPRVEHPNLRIVCKRWNRLLSGNYYYSLRKRNGMAEEWVYVFKRDREGKIS-W 149
A CL VPR P + V K W + + ++RK G EE +Y GK W
Sbjct: 47 AKVCLALVPRSYFPVMGAVSKSWMSFIGSKEFIAVRKEVGRLEERIYALITGDGGKGPYW 106
Query: 150 HAFDPLHQLWKSLPPVPAEYSEALGFGCAVLSGCYLYLFG-GKDPLRGSMRRVVF-YNAR 207
L Q + LPP+P GF VL G L + G G D + + V+ Y+AR
Sbjct: 107 EVLGSLEQQNRMLPPMPGLTKA--GFSVVVLDGKLLVMAGYGVDYGKECVSDEVYQYDAR 164
Query: 208 TNKWHRAPDMLRKRHFFGSCVINNCLYVAGG---ECEGIQRTLPSAEVYDPNRNRWACVA 264
N+W M R F +N +YVAGG + +G L S EVYDP RN+W +
Sbjct: 165 LNRWAALAKMNVARRDFACAEVNGAVYVAGGFGSDGDG----LSSVEVYDPQRNKWTIIE 220
Query: 265 EMNNGMVPFIGVVYDGKWFLKGLDSHRQVTS----EVYLPSSNLWSTIDDEMVTGWRNPS 320
+ ++GK ++ G S + + +VY P + W+ I V +
Sbjct: 221 SLRRPRWGSFACSFNGKLYIMGGRSSFTIGNSRFIDVYDPILHSWTEIKKGCVMVTSHAV 280
Query: 321 ITFNGKLYSSDCRDGCKLRVYDPNTGTWAKFMDSKHHLGSSRAFEAAALVTLNGKLCI 378
I N +L+ + ++ L +++P+ +W K GSS +L L+GKL +
Sbjct: 281 I--NKRLFCIEWKNQRSLAIFNPSDSSWQKI--PVPLTGSSATL--FSLGVLDGKLLL 332
>Os10g0388200 Cyclin-like F-box domain containing protein
Length = 347
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 109/249 (43%), Gaps = 22/249 (8%)
Query: 91 AIACLIRVPRVEHPNLRIVCKRWNRLLSGNYYYSLRKRNGMAEEWVYVFKRDREGKISWH 150
A+ CL RVP + HP L++VC W + +R + E+ + V + E W
Sbjct: 14 ALQCLARVPFLSHPVLQMVCHSWRASVRNGELSKVRNQISATEDLLCVLAFEPENM--WQ 71
Query: 151 AFDPLHQLWKSLPPVPAEYSEALGFGCAVLSGCYLYLFGGK----DPLRGSMRRVVF--- 203
+DPL W +LP +P++ FG A ++G LY+ GG DPL G R+
Sbjct: 72 LYDPLRDKWITLPVMPSQIRNIARFGVASVAG-KLYVIGGGSDRVDPLTGDHDRIFASNE 130
Query: 204 ---YNARTNKWHRAPDMLRKRHFFGSCVINNCLYVAGGECEGIQRTLPSAEVYDPNRNRW 260
Y+ W + ML R F C ++ + VAGG ++++ AE+Y+P + W
Sbjct: 131 VWSYDPLCRLWVQRAPMLVARAMFACCALDGNIIVAGG-FTNCRKSISKAEIYNPEADTW 189
Query: 261 ACVAEMNNGMVPFI-GVVYDGKWFLKGLDSHRQVTSEVYLPSSNLWSTIDDEMVTGWRNP 319
+ ++ G+V GK + H+ + + L N W+ D + G P
Sbjct: 190 EPLPDLRQAHSSACSGLVIKGKMHVL----HKGLPTVQILEDGNAWAVEDYSWLQG---P 242
Query: 320 SITFNGKLY 328
G+LY
Sbjct: 243 MAMVRGELY 251
>Os04g0619300 Cyclin-like F-box domain containing protein
Length = 455
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 116/266 (43%), Gaps = 18/266 (6%)
Query: 91 AIACLIRVPRVEHPNLRIVCKRWNRLLSGNYYYSLRKRNGMAEEWVYVFKRDREGKISWH 150
A CL R ++P+L + K++N L++ Y Y LR++ G+ E WVY+ + W
Sbjct: 122 AQDCLAWASRSDYPSLSCLNKKFNLLINSGYLYRLRRKYGIVEHWVYL----ACSLMPWE 177
Query: 151 AFDPLHQLWKSLPPVPAEYSEALGFGCAVLSGCYLYLFGGKDPLRGSMRRVVFYNARTNK 210
AFDP + W LP +P + + ++ G L +FG + + + YN
Sbjct: 178 AFDPSRKRWMRLPRMPCDECFSCADKESLAVGTQLLVFGRE----YTGLAIWMYNLLARG 233
Query: 211 WHRAPDMLRKRHFFGSCVINNCLYVAGGECEGIQRTLPSAEVYDPNRNRWACVAEMNNGM 270
W R M R F S VAGG C+ + L SAE+Y+ W + +MN
Sbjct: 234 WSRCTPMNLPRCLFASGSFGEIAIVAGG-CDKNGQVLKSAELYNSETGHWETLPDMNLPR 292
Query: 271 VPFIGVVYDGKWF-LKGLDSHRQ--VTSEVYLPSSNLWSTIDDEMVTGW---RNPSI--T 322
G DGK++ + G+ S R E Y + W I D G ++P +
Sbjct: 293 RLSSGFFMDGKFYVIGGVSSQRDSLTCGEEYNLETRTWRRIHDMYPGGTSASQSPPLVAV 352
Query: 323 FNGKLYSSDCRDGCKLRVYDPNTGTW 348
N +LY++D ++ YD TW
Sbjct: 353 VNNQLYAADQATNV-VKKYDKGNNTW 377
>Os02g0748300 Similar to VMP3 protein
Length = 426
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 118/270 (43%), Gaps = 20/270 (7%)
Query: 91 AIACLIRVPRVEHPNLRIVCKRWNRLLSGNYYYSLRKRNGMAEEWVYVFKRDREGKISWH 150
+I+CL R R ++ ++ V + ++ L+ Y R++ G+AE WVY +E W
Sbjct: 96 SISCLARCSRSDYGSIASVNRNFHSLVRSGELYKERRQLGIAEHWVYFSCNVQE----WE 151
Query: 151 AFDPLHQLWKSLPPVPAEYSEALGFGCAVLSGCYLYLFGGKDPLRGSMRRVVFYNARTNK 210
A+DP W +LP +P ++ G L +F GK+ L V+ Y+ TN
Sbjct: 152 AYDPYRSRWMTLPKMPHNECFMCSDKESLAVGTELLVF-GKEILS---HIVLSYSILTNS 207
Query: 211 WHRAPDMLRKRHFFGSCVINNCLYVAGGECEGIQRTLPSAEVYDPNRNRWACVAEMNNGM 270
W DM R FGS VAGG + R L SAE+Y+ RW + MN
Sbjct: 208 WSPGVDMNAPRCLFGSASFGEKAIVAGG-MDAQGRVLRSAELYNSETKRWITLPCMNKAR 266
Query: 271 VPFIGVVYDGKWF-LKGLDSHRQVTS--EVYLPSSNLWSTIDDEMVTGWRNPS------I 321
GV +GK++ + G+ S+ +V + E Y W I++ M G S
Sbjct: 267 RMCSGVFMNGKFYVIGGMASNTEVLTCGEEYDLEKGTWRVIEN-MSEGLNGASGAPPLVA 325
Query: 322 TFNGKLYSSDCRDGCKLRVYDPNTGTWAKF 351
+LY++ G +R Y+ TW
Sbjct: 326 VVENELYAAQ-YAGKLVRKYNIKDNTWTTL 354
>Os11g0602800 Galactose oxidase, central domain containing protein
Length = 432
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 109/268 (40%), Gaps = 22/268 (8%)
Query: 91 AIACLIRVPRVEHPNLRIVCKRWNRLLSGNYYYSLRKRNGMAEEWVYVFKRDREGKISWH 150
AI CL+ PR + + + + + L+ Y LR+ + E +Y E W
Sbjct: 102 AITCLLHTPRSYYGMIACLNRSFCSLMRSGQLYRLRREARIVEHMIYCSCNVLE----WD 157
Query: 151 AFDPLHQLWKSLPPVPAEYSEALGFGCAVLSGCYLYLFGGKDPLRGSMRRVVFYNARTNK 210
FDP Q W ++P +P L ++ G + +FG K +R Y+ +N
Sbjct: 158 GFDPCRQRWFNIPSMPPIECFTLADKESLAVGTNILVFGKKVEAHVVLR----YSLLSNS 213
Query: 211 WHRAPDMLRKRHFFGSCVINNCLYVAGGECEGIQRTLPSAEVYDPNRNRWACVAEMNNGM 270
W M R FGS VAGG G TL SAE+YD W + MN
Sbjct: 214 WTTGDMMNSPRCLFGSASFGEKAIVAGGI--GDNGTLSSAELYDSEAKTWTTLPSMNRAR 271
Query: 271 VPFIGVVYDGKWFLKG--LDSHRQVTS--EVYLPSSNLWSTIDDEMVTGWRNPS------ 320
G DGK+++ G D+H ++ + E + W I D M +G S
Sbjct: 272 KMCSGFFMDGKFYVIGGKADNHNEILNCGEEFDLEKGTWRLIPD-MASGLNGGSGAPPLV 330
Query: 321 ITFNGKLYSSDCRDGCKLRVYDPNTGTW 348
N +LY++D + ++R YD W
Sbjct: 331 AVVNNELYAADYAEK-EVRRYDKVNNAW 357
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,632,482
Number of extensions: 679009
Number of successful extensions: 1507
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 1442
Number of HSP's successfully gapped: 16
Length of query: 442
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 338
Effective length of database: 11,605,545
Effective search space: 3922674210
Effective search space used: 3922674210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 158 (65.5 bits)