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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0619300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.87 (0.0257) R2 : 0.671
β1 : -2.37 (0.0969) R2dD : 0.477 R2D : 0.229
β2 : 0.826 (0.0621) R2dC : 0.133 R2C : 0.128
β3 : 0.832 (0.0748) R2dE : 0.0975 R2E : -0.000306
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.713 (0.0549) R2dN8 : 0.161 R2N8 : 0.0317
σ : 0.48
deviance : 106.41
__
_____
C
peak time of C : 0.315
E
wheather : temperature
threshold : 26.7
memory length : 1256
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
105.61 0.483 9.92 -2.78 0.81 1.02 -0.203 -1.62 -0.821 0.35 26.2 1237 -- --
106.25 0.48 9.87 -2.39 0.844 0.851 -0.357 -- -0.69 0.2 27.06 1260 -- --
105.74 0.479 9.92 -2.79 0.822 1.02 -- -1.72 -0.808 0.35 26.45 1256 -- --
106.41 0.48 9.87 -2.37 0.826 0.832 -- -- -0.713 0.315 26.7 1256 -- --
140.05 0.551 9.88 -2.76 -- 1.38 -- -1.56 -0.817 -- 25 1068 -- --
134.93 0.545 9.87 -2.12 0.96 -- -0.0631 -- -0.694 0.478 -- -- -- --
134.95 0.544 9.87 -2.12 0.96 -- -- -- -0.694 0.484 -- -- -- --
141.38 0.554 9.88 -2.45 -- 1.26 -- -- -0.819 -- 24.71 1066 -- --
247.22 0.732 9.8 -- 0.877 0.363 -- -- -0.413 0.334 28.68 2657 -- --
192.86 0.649 9.85 -2.08 -- -- -- -- -0.678 -- -- -- -- --
253.1 0.744 9.81 -- 0.93 -- -- -- -0.458 0.37 -- -- -- --
288.39 0.794 9.78 -- -- -0.87 -- -- -0.387 -- 24.71 1066 -- --
307.43 0.818 9.8 -- -- -- -- -- -0.447 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 106.60 temperature 25 720 > th dose dependent rect. 17 15
3 107.33 temperature 25 1440 > th dose dependent rect. 15 4
4 107.39 temperature 25 720 > th dose dependent rect. 17 6
7 107.47 temperature 25 1440 > th dose dependent rect. 16 1
15 107.71 temperature 25 1440 > th dose dependent rect. 18 1
37 107.99 humidity 70 14400 < th dose dependent rect. 17 2
40 108.09 temperature 25 1440 > th dose dependent rect. 14 19
50 108.16 temperature 25 1440 > th dose dependent sin 18 NA
62 108.21 humidity 70 720 < th dose independent rect. 18 2
80 108.23 radiation 20 1440 < th dose independent rect. 16 1
92 108.30 radiation 20 1440 < th dose independent rect. 16 11
97 108.32 temperature 25 1440 > th dose dependent rect. 6 15
140 108.39 radiation 20 1440 < th dose independent rect. 16 15
155 108.42 radiation 20 1440 < th dose independent rect. 16 7
171 108.45 humidity 70 1440 > th dose independent rect. 18 9
187 108.47 radiation 20 1440 < th dose independent rect. 16 4
193 108.48 humidity 70 1440 > th dose independent rect. 18 7
225 108.52 humidity 70 1440 > th dose independent rect. 18 2
227 108.52 humidity 70 1440 > th dose independent rect. 18 5
229 108.52 temperature 30 1440 < th dose independent rect. 14 13
231 108.52 humidity 70 14400 < th dose dependent rect. 17 14
248 108.54 temperature 30 1440 < th dose independent rect. 14 11
254 108.55 temperature 30 1440 > th dose independent rect. 14 5
272 108.56 temperature 30 1440 < th dose independent rect. 14 5
275 108.56 radiation 20 1440 > th dose independent rect. 16 15
289 108.58 humidity 70 14400 < th dose dependent rect. 17 5
350 108.66 temperature 25 1440 > th dose dependent no NA NA
351 108.66 wind 3 43200 > th dose dependent rect. 4 12
364 108.70 temperature 30 1440 > th dose independent sin 14 NA
381 108.73 temperature 30 1440 < th dose independent sin 14 NA
416 108.81 radiation 20 1440 > th dose independent rect. 16 1
433 108.82 temperature 25 1440 > th dose dependent rect. 18 23
439 108.85 temperature 30 1440 < th dose independent rect. 14 22
447 108.90 wind 5 43200 < th dose independent rect. 3 14
449 108.92 temperature 30 1440 < th dose independent rect. 14 20
469 108.98 radiation 20 1440 > th dose dependent rect. 16 15
478 109.01 temperature 30 1440 > th dose independent rect. 14 22
479 109.01 temperature 25 720 > th dose dependent sin 12 NA
480 109.02 radiation 20 1440 > th dose dependent rect. 16 1
496 109.03 wind 3 43200 > th dose dependent sin 2 NA
510 109.07 wind 3 43200 > th dose dependent rect. 24 17
536 109.10 wind 5 43200 < th dose independent rect. 5 11
549 109.15 temperature 30 1440 < th dose independent rect. 10 17
554 109.16 temperature 30 1440 < th dose independent rect. 10 15
563 109.16 temperature 30 1440 < th dose independent rect. 9 23
564 109.17 wind 5 43200 < th dose independent sin 1 NA
565 109.17 temperature 30 1440 < th dose independent rect. 9 10
584 109.18 wind 5 43200 > th dose independent rect. 4 13
588 109.18 wind 5 43200 < th dose independent rect. 24 18
616 109.24 radiation 20 1440 < th dose dependent rect. 18 9
620 109.26 temperature 30 1440 > th dose independent rect. 11 8
638 109.27 wind 5 43200 > th dose independent rect. 5 11
640 109.27 temperature 30 1440 < th dose independent rect. 17 23
679 109.30 wind 5 43200 < th dose independent rect. 24 21
682 109.31 wind 5 43200 > th dose independent sin 1 NA
707 109.34 wind 5 43200 < th dose independent rect. 2 20
757 109.37 wind 5 43200 > th dose independent rect. 24 21
762 109.38 temperature 30 1440 < th dose independent rect. 6 21
785 109.39 temperature 30 1440 < th dose independent rect. 7 18
800 109.40 temperature 30 1440 < th dose independent no NA NA
801 109.40 temperature 30 1440 < th dose independent rect. 6 13
805 109.40 temperature 30 1440 < th dose independent rect. 24 19
819 109.40 temperature 30 1440 < th dose independent rect. 2 23
899 109.42 wind 5 43200 > th dose independent rect. 2 20
909 109.42 temperature 30 1440 > th dose independent rect. 17 23
940 109.43 wind 5 43200 > th dose dependent rect. 24 21
962 109.46 humidity 80 720 < th dose dependent rect. 18 1
964 109.46 wind 5 43200 > th dose dependent rect. 2 19