Os10g0388200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os10g0388200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Cyclin-like F-box domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.97 | 0.266 | 10.6 | -0.105 | 0.786 | -0.162 | -0.358 | 3.54 | -0.0247 | 6.24 | 30.7 | 5002 | -- | -- |
| 34.31 | 0.275 | 10.7 | -0.645 | 0.817 | 0.357 | -0.243 | -- | -0.0578 | 6.03 | 30.7 | 5002 | -- | -- |
| 32.28 | 0.265 | 10.6 | -0.118 | 0.787 | -0.159 | -- | 3.5 | -0.0248 | 6.18 | 30.8 | 5004 | -- | -- |
| 32.8 | 0.267 | 10.7 | -0.7 | 0.794 | 0.248 | -- | -- | -0.0232 | 6.22 | 29.6 | 4906 | -- | -- |
| 63.52 | 0.371 | 10.6 | 0.037 | -- | -0.273 | -- | 4.75 | -0.00676 | -- | 30.8 | 4210 | -- | -- |
| 35.2 | 0.278 | 10.7 | -0.627 | 0.79 | -- | -0.328 | -- | -0.0685 | 6.14 | -- | -- | -- | -- |
| 35.45 | 0.279 | 10.7 | -0.631 | 0.788 | -- | -- | -- | -0.0675 | 6.08 | -- | -- | -- | -- |
| 64.46 | 0.374 | 10.7 | -0.684 | -- | 0.302 | -- | -- | 0.000255 | -- | 29.7 | 4228 | -- | -- |
| 45.07 | 0.313 | 10.7 | -- | 0.778 | 0.133 | -- | -- | 0.032 | 6.18 | 30.04 | 4955 | -- | -- |
| 67.65 | 0.384 | 10.7 | -0.608 | -- | -- | -- | -- | -0.0498 | -- | -- | -- | -- | -- |
| 45.94 | 0.317 | 10.7 | -- | 0.779 | -- | -- | -- | 0.0028 | 6.13 | -- | -- | -- | -- |
| 71.37 | 0.393 | 10.7 | -- | -- | -0.351 | -- | -- | 0.157 | -- | 25.6 | 46633 | -- | -- |
| 77.41 | 0.411 | 10.7 | -- | -- | -- | -- | -- | 0.0177 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.47 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 28.51 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 3 | 28.63 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 7 | 28.91 | wind | 9.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 9 | 29.05 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 12 | 29.20 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 19 | 6 |
| 15 | 29.29 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 17 | 29.35 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 31 | 29.48 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 44 | 29.71 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 45 | 29.71 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 54 | 29.81 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 55 | 29.81 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 59 | 29.84 | wind | 9.0 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 60 | 29.84 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 75 | 29.93 | wind | 9.0 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 79 | 29.95 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 86 | 30.00 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 90 | 30.00 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 132 | 30.12 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 138 | 30.13 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 149 | 30.16 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 170 | 30.23 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 174 | 30.24 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 250 | 30.35 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 261 | 30.37 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 6 |
| 268 | 30.39 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 8 |
| 273 | 30.40 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 6 |
| 276 | 30.40 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 11 | 8 |
| 292 | 30.44 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 9 | 10 |
| 299 | 30.45 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 9 | 12 |
| 317 | 30.48 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 437 | 30.63 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 439 | 30.63 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 441 | 30.64 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 458 | 30.66 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 483 | 30.68 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 487 | 30.68 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 497 | 30.70 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 498 | 30.70 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 517 | 30.73 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 550 | 30.77 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 2 |
| 568 | 30.79 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 628 | 30.85 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 20 | 15 |
| 685 | 30.91 | wind | 1.0 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 756 | 30.96 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 804 | 30.99 | temperature | 20.0 | 720 | > th | dose independent | rect. | 7 | 15 |
| 809 | 31.00 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 885 | 31.06 | humidity | 90.0 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 912 | 31.07 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 937 | 31.10 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 944 | 31.11 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 982 | 31.14 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 4 | 1 |