Os10g0409900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os10g0409900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.52 | 0.159 | 12.3 | 0.589 | 0.548 | -0.347 | -0.439 | -0.254 | 0.18 | 6.86 | 24.8 | 48 | -- | -- |
| 11.54 | 0.158 | 12.3 | 0.618 | 0.541 | -0.371 | -0.448 | -- | 0.189 | 6.89 | 24.84 | 57 | -- | -- |
| 11.99 | 0.161 | 12.3 | 0.605 | 0.544 | -0.341 | -- | -0.0494 | 0.188 | 6.77 | 24.8 | 57 | -- | -- |
| 11.99 | 0.161 | 12.3 | 0.602 | 0.545 | -0.345 | -- | -- | 0.184 | 6.75 | 24.9 | 57 | -- | -- |
| 20.84 | 0.213 | 12.3 | 0.937 | -- | -0.825 | -- | 1.78 | 0.294 | -- | 24.6 | 389 | -- | -- |
| 13.63 | 0.173 | 12.3 | 0.554 | 0.647 | -- | -0.203 | -- | 0.157 | 6.15 | -- | -- | -- | -- |
| 13.73 | 0.174 | 12.3 | 0.552 | 0.646 | -- | -- | -- | 0.158 | 6.1 | -- | -- | -- | -- |
| 21.77 | 0.217 | 12.3 | 0.682 | -- | -0.685 | -- | -- | 0.234 | -- | 24.47 | 355 | -- | -- |
| 21.24 | 0.215 | 12.3 | -- | 0.601 | -0.178 | -- | -- | 0.105 | 6.32 | 25.09 | 56 | -- | -- |
| 35.37 | 0.278 | 12.3 | 0.57 | -- | -- | -- | -- | 0.172 | -- | -- | -- | -- | -- |
| 21.75 | 0.218 | 12.3 | -- | 0.654 | -- | -- | -- | 0.0965 | 6.05 | -- | -- | -- | -- |
| 33.71 | 0.27 | 12.3 | -- | -- | -0.59 | -- | -- | 0.147 | -- | 24.7 | 335 | -- | -- |
| 43.94 | 0.309 | 12.3 | -- | -- | -- | -- | -- | 0.109 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.91 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 5 |
| 3 | 10.95 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 12 |
| 13 | 11.01 | temperature | 20 | 30 | > th | dose dependent | rect. | 5 | 15 |
| 20 | 11.05 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 12 |
| 53 | 11.13 | temperature | 15 | 270 | > th | dose dependent | sin | 1 | NA |
| 303 | 11.39 | temperature | 25 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 316 | 11.41 | temperature | 25 | 270 | > th | dose independent | sin | 0 | NA |
| 345 | 11.43 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 379 | 11.46 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 7 |
| 391 | 11.46 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 406 | 11.47 | temperature | 25 | 30 | > th | dose dependent | rect. | 21 | 22 |
| 498 | 11.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 541 | 11.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 11 |
| 565 | 11.54 | temperature | 25 | 720 | < th | dose independent | rect. | 4 | 8 |
| 595 | 11.54 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 22 |
| 599 | 11.55 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 762 | 11.59 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 828 | 11.60 | radiation | 1 | 270 | > th | dose dependent | rect. | 13 | 22 |
| 830 | 11.61 | radiation | 30 | 270 | > th | dose dependent | sin | 12 | NA |
| 898 | 11.62 | radiation | 40 | 270 | < th | dose dependent | rect. | 17 | 21 |
| 981 | 11.65 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |