Os10g0363600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os10g0363600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.31 | 0.405 | 11.6 | -0.732 | 0.17 | -0.428 | -0.795 | -0.408 | -0.362 | 10.5 | 24.7 | 252 | -- | -- |
| 74.56 | 0.402 | 11.6 | -0.846 | 0.145 | -0.44 | -0.896 | -- | -0.419 | 9.59 | 24.5 | 212 | -- | -- |
| 76.28 | 0.407 | 11.6 | -0.797 | 0.148 | -0.387 | -- | -0.326 | -0.38 | 12 | 24.5 | 192 | -- | -- |
| 76.41 | 0.407 | 11.6 | -0.892 | 0.19 | -0.399 | -- | -- | -0.389 | 12.8 | 24.5 | 212 | -- | -- |
| 77.83 | 0.411 | 11.6 | -0.806 | -- | -0.429 | -- | -0.284 | -0.396 | -- | 24.5 | 177 | -- | -- |
| 85.08 | 0.432 | 11.5 | -0.745 | 0.384 | -- | 0.0669 | -- | -0.179 | 15.1 | -- | -- | -- | -- |
| 85.09 | 0.432 | 11.5 | -0.743 | 0.383 | -- | -- | -- | -0.178 | 15 | -- | -- | -- | -- |
| 78.13 | 0.412 | 11.6 | -0.889 | -- | -0.449 | -- | -- | -0.427 | -- | 24.53 | 177 | -- | -- |
| 95.3 | 0.455 | 11.6 | -- | 0.253 | -0.27 | -- | -- | -0.233 | 14.2 | 24.6 | 181 | -- | -- |
| 93.52 | 0.452 | 11.5 | -0.76 | -- | -- | -- | -- | -0.188 | -- | -- | -- | -- | -- |
| 99.65 | 0.467 | 11.5 | -- | 0.398 | -- | -- | -- | -0.0957 | 15 | -- | -- | -- | -- |
| 98.39 | 0.462 | 11.6 | -- | -- | -0.362 | -- | -- | -0.285 | -- | 24.59 | 172 | -- | -- |
| 108.74 | 0.487 | 11.5 | -- | -- | -- | -- | -- | -0.104 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.34 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 16 |
| 8 | 65.40 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 16 |
| 18 | 66.15 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 16 |
| 25 | 66.43 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 34 | 66.75 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 38 | 66.93 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 42 | 67.09 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 20 |
| 48 | 67.30 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 16 |
| 50 | 67.32 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 8 |
| 52 | 67.34 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 8 |
| 70 | 67.81 | temperature | 10 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 101 | 68.20 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 17 |
| 107 | 68.36 | temperature | 25 | 270 | < th | dose independent | sin | 7 | NA |
| 158 | 69.05 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 178 | 69.23 | temperature | 10 | 270 | > th | dose dependent | sin | 7 | NA |
| 181 | 69.31 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 208 | 69.59 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 227 | 69.76 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 230 | 69.78 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 7 |
| 246 | 69.84 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 278 | 70.12 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 13 | 8 |
| 279 | 70.13 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 15 | 8 |
| 303 | 70.30 | temperature | 25 | 270 | > th | dose independent | sin | 6 | NA |
| 312 | 70.39 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 16 | 16 |
| 319 | 70.46 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 6 |
| 325 | 70.49 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 7 |
| 330 | 70.51 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 18 |
| 363 | 70.68 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 15 | 16 |
| 388 | 70.78 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 407 | 70.86 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 19 |
| 431 | 71.00 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 449 | 71.09 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 14 | 17 |
| 459 | 71.12 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 9 | 18 |
| 474 | 71.21 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 4 |
| 507 | 71.32 | temperature | 15 | 10 | > th | dose dependent | rect. | 10 | 18 |
| 537 | 71.43 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 7 | 20 |
| 540 | 71.45 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 10 | 17 |
| 561 | 71.52 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 590 | 71.60 | wind | 9 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 600 | 71.64 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 605 | 71.65 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 8 |
| 608 | 71.66 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 647 | 71.78 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 19 |
| 657 | 71.82 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 8 |
| 667 | 71.84 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 669 | 71.85 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 1 |
| 679 | 71.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 684 | 71.90 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 1 |
| 690 | 71.91 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 4 |
| 707 | 71.96 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 15 | 8 |
| 724 | 72.00 | wind | 9 | 14400 | > th | dose independent | rect. | 5 | 7 |
| 764 | 72.08 | wind | 9 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 782 | 72.11 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 8 |
| 806 | 72.18 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 878 | 72.33 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 16 | 16 |
| 888 | 72.35 | humidity | 50 | 270 | > th | dose independent | rect. | 6 | 8 |
| 921 | 72.42 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 1 | 7 |
| 927 | 72.42 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 975 | 72.51 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 2 | 5 |
| 985 | 72.53 | wind | 9 | 14400 | < th | dose independent | rect. | 21 | 17 |
| 990 | 72.55 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 15 |
| 992 | 72.55 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 5 | 16 |