Os04g0380300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os04g0380300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 172.5 | 0.617 | 9.8 | -0.674 | 4.23 | 1.55 | -1.05 | -1.56 | -0.499 | 7.46 | 23.56 | 67 | -- | -- |
| 181.71 | 0.628 | 9.81 | -0.655 | 4.19 | 1.5 | -0.277 | -- | -0.503 | 7.39 | 25.66 | 66 | -- | -- |
| 175.01 | 0.616 | 9.8 | -0.689 | 4.21 | 1.55 | -- | -1.24 | -0.499 | 7.45 | 24.65 | 66 | -- | -- |
| 181.88 | 0.628 | 9.8 | -0.66 | 4.19 | 1.51 | -- | -- | -0.506 | 7.41 | 25.53 | 66 | -- | -- |
| 207.13 | 0.67 | 9.88 | -0.27 | -- | 5.21 | -- | -2.43 | -0.37 | -- | 2.44 | 750 | -- | -- |
| 217.97 | 0.692 | 9.85 | -0.714 | 4.1 | -- | -0.962 | -- | -0.604 | 6.11 | -- | -- | -- | -- |
| 220.22 | 0.695 | 9.85 | -0.723 | 4.1 | -- | -- | -- | -0.6 | 6.13 | -- | -- | -- | -- |
| 212.98 | 0.68 | 9.89 | -0.353 | -- | 5.18 | -- | -- | -0.39 | -- | 2.218 | 752 | -- | -- |
| 193.41 | 0.648 | 9.79 | -- | 4.18 | 1.5 | -- | -- | -0.435 | 7.4 | 25.32 | 67 | -- | -- |
| 1090.27 | 1.54 | 9.92 | -0.608 | -- | -- | -- | -- | -0.509 | -- | -- | -- | -- | -- |
| 234.01 | 0.716 | 9.83 | -- | 4.09 | -- | -- | -- | -0.52 | 6.14 | -- | -- | -- | -- |
| 216.24 | 0.685 | 9.89 | -- | -- | 5.21 | -- | -- | -0.365 | -- | 1.925 | 755 | -- | -- |
| 1100.01 | 1.55 | 9.9 | -- | -- | -- | -- | -- | -0.441 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 166.83 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 2 | 167.26 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 3 | 17 |
| 8 | 169.52 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 13 | 171.00 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 6 |
| 20 | 171.69 | humidity | 70.0 | 30 | > th | dose independent | rect. | 3 | 17 |
| 24 | 171.94 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 26 | 172.02 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 3 | 17 |
| 28 | 172.19 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 33 | 172.63 | radiation | 10.0 | 90 | < th | dose dependent | sin | 0 | NA |
| 36 | 172.71 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 20 | 7 |
| 49 | 173.12 | humidity | 80.0 | 270 | > th | dose independent | rect. | 1 | 18 |
| 56 | 173.34 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 70 | 173.86 | radiation | 1.0 | 270 | > th | dose independent | sin | 2 | NA |
| 77 | 174.18 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 79 | 174.41 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 7 | 10 |
| 83 | 174.55 | radiation | 20.0 | 90 | < th | dose dependent | no | NA | NA |
| 86 | 174.60 | humidity | 50.0 | 30 | > th | dose dependent | sin | 2 | NA |
| 120 | 175.19 | radiation | 40.0 | 30 | < th | dose independent | rect. | 3 | 17 |
| 137 | 175.45 | radiation | 1.0 | 90 | > th | dose independent | sin | 0 | NA |
| 149 | 175.75 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 21 |
| 155 | 175.85 | radiation | 30.0 | 270 | < th | dose independent | rect. | 1 | 17 |
| 157 | 175.89 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 158 | 175.93 | radiation | 20.0 | 30 | < th | dose independent | rect. | 3 | 17 |
| 181 | 176.29 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 17 |
| 182 | 176.29 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 183 | 176.29 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 9 | 8 |
| 184 | 176.30 | radiation | 1.0 | 10 | > th | dose independent | sin | 23 | NA |
| 185 | 176.30 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 186 | 176.30 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 20 | 21 |
| 193 | 176.35 | radiation | 1.0 | 90 | > th | dose independent | rect. | 7 | 10 |
| 267 | 177.32 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 22 | 19 |
| 323 | 177.81 | radiation | 20.0 | 30 | < th | dose independent | rect. | 1 | 23 |
| 328 | 177.84 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 24 | 17 |
| 336 | 177.97 | humidity | 90.0 | 30 | < th | dose dependent | sin | 2 | NA |
| 357 | 178.12 | radiation | 1.0 | 10 | > th | dose independent | rect. | 7 | 10 |
| 358 | 178.17 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 3 | 13 |
| 393 | 178.43 | radiation | 20.0 | 90 | < th | dose independent | rect. | 11 | 22 |
| 437 | 178.70 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 451 | 178.83 | radiation | 1.0 | 270 | > th | dose independent | rect. | 4 | 11 |
| 523 | 179.26 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 9 | 20 |
| 556 | 179.47 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 621 | 179.71 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 21 | 7 |
| 641 | 179.86 | humidity | 80.0 | 10 | < th | dose independent | rect. | 9 | 8 |
| 651 | 179.91 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 7 | 11 |
| 687 | 180.06 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 9 | 11 |
| 695 | 180.13 | temperature | 20.0 | 270 | > th | dose independent | rect. | 20 | 5 |
| 733 | 180.39 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 10 | 10 |
| 735 | 180.40 | radiation | 10.0 | 90 | > th | dose independent | rect. | 15 | 23 |
| 748 | 180.51 | radiation | 20.0 | 30 | < th | dose independent | rect. | 17 | 23 |
| 753 | 180.52 | radiation | 1.0 | 720 | < th | dose independent | rect. | 9 | 20 |
| 768 | 180.58 | radiation | 10.0 | 90 | > th | dose independent | no | NA | NA |
| 850 | 180.61 | temperature | 15.0 | 30 | > th | dose independent | rect. | 20 | 7 |
| 856 | 180.63 | radiation | 1.0 | 720 | < th | dose independent | rect. | 7 | 22 |
| 881 | 180.70 | humidity | 80.0 | 90 | < th | dose independent | rect. | 7 | 10 |
| 900 | 180.81 | radiation | 30.0 | 270 | < th | dose independent | rect. | 13 | 16 |
| 913 | 180.87 | radiation | 1.0 | 90 | < th | dose independent | sin | 0 | NA |
| 918 | 180.89 | radiation | 10.0 | 90 | < th | dose independent | rect. | 13 | 18 |
| 920 | 180.90 | radiation | 10.0 | 90 | < th | dose independent | rect. | 13 | 20 |
| 921 | 180.91 | radiation | 1.0 | 720 | < th | dose independent | rect. | 9 | 11 |
| 934 | 180.99 | radiation | 1.0 | 720 | > th | dose independent | rect. | 9 | 8 |
| 937 | 181.01 | radiation | 1.0 | 10 | < th | dose independent | sin | 23 | NA |
| 952 | 181.09 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 7 |
| 953 | 181.09 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 7 |
| 988 | 181.23 | radiation | 1.0 | 270 | < th | dose independent | sin | 2 | NA |
| 991 | 181.25 | temperature | 25.0 | 270 | < th | dose independent | rect. | 12 | 18 |
| 996 | 181.26 | radiation | 20.0 | 90 | < th | dose independent | rect. | 11 | 20 |