BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0380300 Os04g0380300|AK120132
(375 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0380300 Cyclin-like F-box domain containing protein 745 0.0
Os02g0504900 Cyclin-like F-box domain containing protein 551 e-157
Os10g0409900 Cyclin-like F-box domain containing protein 105 4e-23
Os02g0202900 Cyclin-like F-box domain containing protein 105 8e-23
Os07g0153400 Cyclin-like F-box domain containing protein 102 6e-22
Os03g0167800 Cyclin-like F-box domain containing protein 97 2e-20
Os02g0114600 Cyclin-like F-box domain containing protein 93 3e-19
Os10g0388200 Cyclin-like F-box domain containing protein 89 5e-18
Os04g0619300 Cyclin-like F-box domain containing protein 79 4e-15
Os06g0594400 Cyclin-like F-box domain containing protein 79 4e-15
Os11g0138700 Cyclin-like F-box domain containing protein 65 6e-11
>Os04g0380300 Cyclin-like F-box domain containing protein
Length = 375
Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/375 (96%), Positives = 363/375 (96%)
Query: 1 MLTLVGAREPFVKAQTNLPATMQLKFPTRTQGDSYGALIPGLPEDLAKVCLALVPRSYFP 60
MLTLVGAREPFVKAQTNLPATMQLKFPTRTQGDSYGALIPGLPEDLAKVCLALVPRSYFP
Sbjct: 1 MLTLVGAREPFVKAQTNLPATMQLKFPTRTQGDSYGALIPGLPEDLAKVCLALVPRSYFP 60
Query: 61 VMGAVSKSWMSFIGSKEFIAVRKEVGRLEERIYALITGDGGKGPYWEVLGSLEQQNRMLP 120
VMGAVSKSWMSFIGSKEFIAVRKEVGRLEERIYALITGDGGKGPYWEVLGSLEQQNRMLP
Sbjct: 61 VMGAVSKSWMSFIGSKEFIAVRKEVGRLEERIYALITGDGGKGPYWEVLGSLEQQNRMLP 120
Query: 121 PMPGLTKAGFSVVVLDGKLLVMAGYGVDYGKECVSDEVYQYDARLNRWAALAKMNVARRD 180
PMPGLTKAGFSVVVLDGKLLVMAGYGVDYGKECVSDEVYQYDARLNRWAALAKMNVARRD
Sbjct: 121 PMPGLTKAGFSVVVLDGKLLVMAGYGVDYGKECVSDEVYQYDARLNRWAALAKMNVARRD 180
Query: 181 FACAEVNGAVYVAXXXXXXXXXXXXVEVYDPQRNKWTIIESLRRPRWGSFACSFNGKLYI 240
FACAEVNGAVYVA VEVYDPQRNKWTIIESLRRPRWGSFACSFNGKLYI
Sbjct: 181 FACAEVNGAVYVAGGFGSDGDGLSSVEVYDPQRNKWTIIESLRRPRWGSFACSFNGKLYI 240
Query: 241 MGGRSSFTIGNSRFIDVYDPILHSWTEIKKGCVMVTSHAVINKRLFCIEWKNQRSLAIFN 300
MGGRSSFTIGNSRFIDVYDPILHSWTEIKKGCVMVTSHAVINKRLFCIEWKNQRSLAIFN
Sbjct: 241 MGGRSSFTIGNSRFIDVYDPILHSWTEIKKGCVMVTSHAVINKRLFCIEWKNQRSLAIFN 300
Query: 301 PSDSSWQKIPVPLTGSSATLFSLGVLDGKLLLFSQEEEPGYQTLMYDPTAPAGSEWHTST 360
PSDSSWQKIPVPLTGSSATLFSLGVLDGKLLLFSQEEEPGYQTLMYDPTAPAGSEWHTST
Sbjct: 301 PSDSSWQKIPVPLTGSSATLFSLGVLDGKLLLFSQEEEPGYQTLMYDPTAPAGSEWHTST 360
Query: 361 LKPSGLCLCSVTIES 375
LKPSGLCLCSVTIES
Sbjct: 361 LKPSGLCLCSVTIES 375
>Os02g0504900 Cyclin-like F-box domain containing protein
Length = 385
Score = 551 bits (1420), Expect = e-157, Method: Compositional matrix adjust.
Identities = 267/385 (69%), Positives = 308/385 (80%), Gaps = 10/385 (2%)
Query: 1 MLTLVGAREPFVKAQTNLPATMQLKFPTR---TQG-------DSYGALIPGLPEDLAKVC 50
MLTLVG R+ F ++Q L A MQLK PTR +QG D+Y ALIPGLPEDLAK+C
Sbjct: 1 MLTLVGTRDSFAQSQAQLCAGMQLKAPTRAKYSQGFMPIGESDAYCALIPGLPEDLAKIC 60
Query: 51 LALVPRSYFPVMGAVSKSWMSFIGSKEFIAVRKEVGRLEERIYALITGDGGKGPYWEVLG 110
LALVPRS FPVMG+VSK WMSF+ SKEFIAVRKEVG+LEE +Y L G KG +WEVLG
Sbjct: 61 LALVPRSQFPVMGSVSKRWMSFLESKEFIAVRKEVGKLEEWVYVLTADAGSKGSHWEVLG 120
Query: 111 SLEQQNRMLPPMPGLTKAGFSVVVLDGKLLVMAGYGVDYGKECVSDEVYQYDARLNRWAA 170
Q++ LPPMPG TKAGF VVVLDGKL V+AGY D+GKECVSDEVY+YD+ LNRW
Sbjct: 121 CSGQKHSPLPPMPGPTKAGFGVVVLDGKLFVIAGYAADHGKECVSDEVYRYDSCLNRWVE 180
Query: 171 LAKMNVARRDFACAEVNGAVYVAXXXXXXXXXXXXVEVYDPQRNKWTIIESLRRPRWGSF 230
L+KMNVAR DFACAEVNG +YVA VEVYD ++NKWT+IESLRRPRWG F
Sbjct: 181 LSKMNVARCDFACAEVNGMIYVAGGFGPNGDSLSSVEVYDAEQNKWTLIESLRRPRWGCF 240
Query: 231 ACSFNGKLYIMGGRSSFTIGNSRFIDVYDPILHSWTEIKKGCVMVTSHAVINKRLFCIEW 290
ACSF GKLY+MGGRS FTIGN+RF+DVY+P +SW E+K GCVMVT+HAV++K+LFCIEW
Sbjct: 241 ACSFEGKLYVMGGRSRFTIGNTRFVDVYNPNDNSWGEVKNGCVMVTAHAVLDKKLFCIEW 300
Query: 291 KNQRSLAIFNPSDSSWQKIPVPLTGSSATLFSLGVLDGKLLLFSQEEEPGYQTLMYDPTA 350
KNQRSLA+FNP+D+SWQK+PVPLTGSS+T F G+ DGKLLLFS +EEP Y+TLMYDP A
Sbjct: 301 KNQRSLAVFNPADNSWQKVPVPLTGSSSTRFCFGIHDGKLLLFSLDEEPCYKTLMYDPAA 360
Query: 351 PAGSEWHTSTLKPSGLCLCSVTIES 375
P GSEW TS LKP GLCLCSVTI +
Sbjct: 361 PTGSEWFTSELKPPGLCLCSVTIRA 385
>Os10g0409900 Cyclin-like F-box domain containing protein
Length = 442
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/314 (28%), Positives = 135/314 (42%), Gaps = 20/314 (6%)
Query: 28 TRTQGDSYGALIPGLPEDLAKVCLALVPRSYFPVMGAVSKSWMSFIGSKEFIAVRKEVGR 87
+RTQ L+PGLP+DLA CL VPR P + V K W + + ++RK G
Sbjct: 76 SRTQA----PLLPGLPDDLAIACLIRVPRVEHPNLRIVCKRWNRLLSGNYYYSLRKRNGM 131
Query: 88 LEERIYALITGDGGKGPYWEVLGSLEQQNRMLPPMPGLTKA--GFSVVVLDGKLLVMAGY 145
EE +Y GK W L Q + LPP+P GF VL G L + G
Sbjct: 132 AEEWVYVFKRDREGK-ISWHAFDPLHQLWKSLPPVPAEYSEALGFGCAVLSGCYLYLFG- 189
Query: 146 GVDYGKECVSDEVYQYDARLNRWAALAKMNVARRDFACAEVNGAVYVAXXXXXXXXXXX- 204
G D + + V+ Y+AR N+W M R F +N +YVA
Sbjct: 190 GKDPLRGSMRRVVF-YNARTNKWHRAPDMLRKRHFFGSCVINNCLYVAGGECEGIQRTLP 248
Query: 205 XVEVYDPQRNKWTIIESLRRPRWGSFACSFNGKLYIMGGRSSFTIGNSRFIDVYDPILHS 264
EVYDP RN+W + + ++GK ++ G S + + +VY P +
Sbjct: 249 SAEVYDPNRNRWACVAEMNNGMVPFIGVVYDGKWFLKGLDSHRQVTS----EVYLPSSNL 304
Query: 265 WTEIKKGCVMVTSHAVI--NKRLFCIEWKNQRSLAIFNPSDSSWQKI--PVPLTGSSATL 320
W+ I V + I N +L+ + ++ L +++P+ +W K GSS
Sbjct: 305 WSTIDDEMVTGWRNPSITFNGKLYSSDCRDGCKLRVYDPNTGTWAKFMDSKHHLGSSRAF 364
Query: 321 --FSLGVLDGKLLL 332
+L L+GKL +
Sbjct: 365 EAAALVTLNGKLCI 378
>Os02g0202900 Cyclin-like F-box domain containing protein
Length = 436
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 89/319 (27%), Positives = 134/319 (42%), Gaps = 35/319 (10%)
Query: 14 AQTNLPATMQLKFPTRTQGDSYGA-------------LIPGLPEDLAKVCLALVPRSYFP 60
AQ +L A++ P R+ G + LIPGLP+DLA CL VPR
Sbjct: 39 AQPSLRASIHPLKPKRSPGRDHRGGGGAGGGGGRQCPLIPGLPDDLAVACLIRVPRGDHW 98
Query: 61 VMGAVSKSWMSFIGSKEFIAVRKEVGRLEERIYALITGDGGKGPYWEVLGSLEQQNRMLP 120
+ V + W + F +R+ +G E+ +YA + DG W+VL R LP
Sbjct: 99 KLRLVCRRWSRLLAGNYFYGLRRRLGLAEQWVYA-VKRDGEGRVSWDVLDPARLAWRALP 157
Query: 121 PMPG--LTKAGFSVVVLDGKLLVMAGYGVDYGKECVSDEVYQYDARLNRWAALAKMNVAR 178
P+PG AGF VL G L + G G D + + V+ Y AR NRW M R
Sbjct: 158 PVPGEYAGAAGFGCAVLGGCHLYLLG-GSDPRRGPMRRVVF-YSARSNRWHRAPDMLRRR 215
Query: 179 RDFACAEVNGAVYVAXXXXXXXXXX-----XXVEVYDPQRNKWTIIESLRRPRWGSFACS 233
F C + +YVA VEV+DP +N+W+ + + +
Sbjct: 216 HGFGCCVMGNRLYVAGGEGCGVGGGGGGGLRSVEVFDPAKNRWSFVSDMAASLMPFVSAV 275
Query: 234 FNGKLYIMGGRSSFTIGNSRFI--DVYDPILHSWTEIKKGCVMVTS----HAVINKRLFC 287
G+ Y+ G +G R + VY P +W+ + MVT A + RL+
Sbjct: 276 HGGRWYVKG------LGAQRQVMSQVYSPEADAWSAAHELDAMVTGWRSPSASLGGRLYA 329
Query: 288 IEWKNQRSLAIFNPSDSSW 306
+ K+ L ++ + +W
Sbjct: 330 ADCKDGCRLRAYDEAAGAW 348
>Os07g0153400 Cyclin-like F-box domain containing protein
Length = 406
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 132/309 (42%), Gaps = 16/309 (5%)
Query: 38 LIPGLPEDLAKVCLALVPRSYFPVMGAVSKSWMSFIGSK-EFIAVRKEVGRLEERIYALI 96
LIPGLP+D A CL +P V + W + K F RK +G ++ L
Sbjct: 53 LIPGLPDDAALNCLLRLPVETHEACRLVCRRWHHLLADKARFFMQRKVMGFRSPLLFTLA 112
Query: 97 TGDGGKGPYWEVLGSLEQQNRMLPPMPGLTKA---GFSVVVL--DGKLLVMAGYGVDYGK 151
W+VL +P MP +A GF V + DG LLV G D
Sbjct: 113 FHRCTGKIQWKVLDLNYLTWHTIPAMPCRDRACPRGFGCVAIPSDGTLLVCGGLVSDM-- 170
Query: 152 ECVSDEVYQYDARLNRWAALAKMNVARRDFACAEVNGAVYVAXXXXXXXXXXXXVEVYDP 211
+C V +YD NRW + +M AR FA ++G VYVA EV DP
Sbjct: 171 DCPLHLVLKYDVYKNRWTVMTRMLAARSFFAGGVIDGRVYVAGGYSTDQFELNSAEVLDP 230
Query: 212 QRNKWTIIESLRRPRWGSFACSFNGKLYIMGGRSSFTIGNSRFIDVYDPILHSW----TE 267
+ W + S+ S + +G+LY+ G ++ +S VYDP + W
Sbjct: 231 VKGVWQPVASMGMNMASSDSAVISGRLYVTEG-CAWPFFSSPRGQVYDPKIDRWEVMPVG 289
Query: 268 IKKGCVMVTSHAVINKRLFCIEWKNQRSLAIFNPSDSSWQKIP-VPLTGSSATLFSLGVL 326
+++G ++ VI+K LF I + + +++P SW + P+ FS+ L
Sbjct: 290 MREGWTGLS--VVIDKHLFVISEYERMKVKVYDPETDSWDSVKGPPMPERIMKPFSVSCL 347
Query: 327 DGKLLLFSQ 335
+ K+++ +
Sbjct: 348 ENKIVVVGR 356
>Os03g0167800 Cyclin-like F-box domain containing protein
Length = 438
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 126/296 (42%), Gaps = 12/296 (4%)
Query: 19 PATMQLKFPTRTQGDSYGALIPGLPEDLAKVCLALVPRSYFPVMGAVSKSWMSFIGSKEF 78
P + + + + + L+PGLP+DLA CL VPR + V K W + +
Sbjct: 59 PNKRKSRSSHKERCRTQAPLLPGLPDDLAITCLMRVPRLEHTNLRLVCKRWNRLLSGNYY 118
Query: 79 IAVRKEVGRLEERIYALITGDGGKGPYWEVLGSLEQQNRMLPPMPG--LTKAGFSVVVLD 136
++RK++G EE ++ + D + W + Q + LPP+P GF VL
Sbjct: 119 YSLRKKLGMAEEWVF-VFKRDRDRKISWHAFDPVHQVWKSLPPVPAEYSEAVGFGCAVLS 177
Query: 137 GKLLVMAGYGVDYGKECVSDEVYQYDARLNRWAALAKMNVARRDFACAEVNGAVYVA-XX 195
G L + G G D + + V+ Y+AR+N+W M R F +N +YVA
Sbjct: 178 GCYLYLFG-GKDPVRGSMRRVVF-YNARINKWLRAPDMLQKRHCFGSCVINNRLYVAGGE 235
Query: 196 XXXXXXXXXXVEVYDPQRNKWTIIESLRRPRWGSFACSFNGKLYIMGGRSSFTIGNSRFI 255
E YDP RN+W+ I + ++GK ++ G S + +
Sbjct: 236 CEGIQRTLRSAEFYDPNRNRWSYISEMSTGMVPFIGVVYDGKWFLKGLDSHRQVVS---- 291
Query: 256 DVYDPILHSWTEIKKGCVMVTSHAVI--NKRLFCIEWKNQRSLAIFNPSDSSWQKI 309
+VY P + W+ V + I N RL+ E ++ L +++ SW +
Sbjct: 292 EVYMPTSNVWSVTADEMVTGWRNPSICFNGRLYSAECRDGCKLRVYDRDTRSWTRF 347
>Os02g0114600 Cyclin-like F-box domain containing protein
Length = 360
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 128/281 (45%), Gaps = 21/281 (7%)
Query: 35 YGALIPGLPEDLAKVCLALVPRSYFPVMGAVSKSWMSFIGSKEFIAVRKEVGRLEERIYA 94
+ +LI GLP+++A +CLA VPR Y + VSK W + + S+E+ + RK E +Y
Sbjct: 22 HTSLIHGLPDEIAILCLARVPRRYHNALRCVSKRWRALLSSEEWHSCRKRNNLDEPWVYV 81
Query: 95 LITGDGGKGPYWEVLG------SLEQQNRMLPPMPGLTKAGFSVVVLDGKLLVMAGYGVD 148
+ G K VL SL+ + PP ++ G S+ LD +L ++ G
Sbjct: 82 ICRSTGIKC---YVLAPDPTTRSLKIMQVIEPPCS--SREGISIETLDKRLFLLG--GCS 134
Query: 149 YGKECVSDEVYQYDARLNRWAALAKMNVARRDFACAEVNGAVYVAXXXXXXXXXXXXVEV 208
+ K+ +DEV+ YDA N W+++A M AR F A ++ +Y+ ++
Sbjct: 135 WLKD-ANDEVFCYDASSNCWSSVAPMPTARCYFVSAALDKKLYITGGLGLTDKSPNSWDI 193
Query: 209 YDPQRNKWTIIES-LRRPRWGSFACSFNGKLYIMGGRSSFTIGNSRFIDVYDPILHSW-- 265
YDP N W + ++ + P F + +G+L + F +YDP+ +W
Sbjct: 194 YDPVTNSWCVHKNPMLTPDIVKFV-ALDGELVTV---HKAAWNRMYFAGIYDPLCRTWRG 249
Query: 266 TEIKKGCVMVTSHAVINKRLFCIEWKNQRSLAIFNPSDSSW 306
TE + S V++ L+ +E L ++ W
Sbjct: 250 TENEIALCWSGSTVVMDGTLYMLEQSLGTKLMMWQKETKEW 290
>Os10g0388200 Cyclin-like F-box domain containing protein
Length = 347
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 98/216 (45%), Gaps = 17/216 (7%)
Query: 38 LIPGLPEDLAKVCLALVPRSYFPVMGAVSKSWMSFIGSKEFIAVRKEVGRLEERIYALIT 97
LI GLP ++A CLA VP PV+ V SW + + + E VR ++ E+ + L
Sbjct: 5 LIDGLPNEVALQCLARVPFLSHPVLQMVCHSWRASVRNGELSKVRNQISATEDLLCVLAF 64
Query: 98 GDGGKGPYWEVLGSLEQQNRMLPPMPGLTK--AGFSVVVLDGKLLVMAG-------YGVD 148
W++ L + LP MP + A F V + GKL V+ G D
Sbjct: 65 EPEN---MWQLYDPLRDKWITLPVMPSQIRNIARFGVASVAGKLYVIGGGSDRVDPLTGD 121
Query: 149 YGKECVSDEVYQYDARLNRWAALAKMNVARRDFACAEVNGAVYVAXXXXXXXXXXXXVEV 208
+ + S+EV+ YD W A M VAR FAC ++G + VA E+
Sbjct: 122 HDRIFASNEVWSYDPLCRLWVQRAPMLVARAMFACCALDGNIIVAGGFTNCRKSISKAEI 181
Query: 209 YDPQRNKWTIIESLRRPRWGSFACS---FNGKLYIM 241
Y+P+ + W + LR+ S ACS GK++++
Sbjct: 182 YNPEADTWEPLPDLRQAH--SSACSGLVIKGKMHVL 215
>Os04g0619300 Cyclin-like F-box domain containing protein
Length = 455
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 81/358 (22%), Positives = 145/358 (40%), Gaps = 38/358 (10%)
Query: 28 TRTQGDSYGA-----LIPGLPEDLAKVCLALVPRSYFPVMGAVSKSWMSFIGSKEFIAVR 82
T+++GDS + PGL +DLA+ CLA RS +P + ++K + I S +R
Sbjct: 98 TQSKGDSSASGSNDCFFPGLHDDLAQDCLAWASRSDYPSLSCLNKKFNLLINSGYLYRLR 157
Query: 83 KEVGRLEERIYALITGDGGKGPYWEVLGSLEQQNRMLPPMPGLTKAGFSVVVLDGKLLVM 142
++ G +E +Y + P WE ++ LP MP FS D + L +
Sbjct: 158 RKYGIVEHWVYLACS----LMP-WEAFDPSRKRWMRLPRMP--CDECFSCA--DKESLAV 208
Query: 143 AGYGVDYGKECVSDEVYQYDARLNRWAALAKMNVARRDFACAEVNGAVYVAXXXXXXXXX 202
+ +G+E ++ Y+ W+ MN+ R FA VA
Sbjct: 209 GTQLLVFGREYTGLAIWMYNLLARGWSRCTPMNLPRCLFASGSFGEIAIVAGGCDKNGQV 268
Query: 203 XXXVEVYDPQRNKWTIIESLRRPRWGSFACSFNGKLYIMGG----RSSFTIGNSRFIDVY 258
E+Y+ + W + + PR S +GK Y++GG R S T G Y
Sbjct: 269 LKSAELYNSETGHWETLPDMNLPRRLSSGFFMDGKFYVIGGVSSQRDSLTCGEE-----Y 323
Query: 259 DPILHSWTEIKKGCVMVTSH-------AVINKRLFCIEWKNQRSLAIFNPSDSSWQKI-P 310
+ +W I TS AV+N +L+ + + + ++ +++W + P
Sbjct: 324 NLETRTWRRIHDMYPGGTSASQSPPLVAVVNNQLYAAD-QATNVVKKYDKGNNTWNIVKP 382
Query: 311 VPLTGSSATLFSLG--VLDGKLLLFSQEEEPGYQTLMYDPTAP----AGSEWHTSTLK 362
+P+ S+ + L +LL+ P + ++ P G++W ++K
Sbjct: 383 LPVRADSSNGWGLAFKACGDRLLVIGGHRVPRGEVILLHSWCPEDGNGGADWEVLSVK 440
>Os06g0594400 Cyclin-like F-box domain containing protein
Length = 381
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 143/351 (40%), Gaps = 47/351 (13%)
Query: 35 YGALIPGLPEDLAKVCLALVPRSYFPVMGAVSKSWMSFIGSKEFIAVRKEVGRLEERIYA 94
Y LIPGLPE++A+ CL V P + +S+ W + + S + +RK G L A
Sbjct: 3 YNELIPGLPEEVARECLIRVGFDQLPAVRRISRQWKAEVESPAYNRLRKAEG-LARPALA 61
Query: 95 LITGD---GGKGPYWEVLGS-------------LEQQNRMLPPMPGLTKAGFS------V 132
L+ GP + S L+ P+P + A S V
Sbjct: 62 LVQARRELAEAGPAADKQSSAGGVPGNSYRMVLLDPAEGRWTPLPEVGGASGSLPLFCQV 121
Query: 133 VVLDG-----KLLVMAGYGVDYGKECVSDEVYQYDARLNRWAALAKMNVARRDF-ACAEV 186
+DG K LV+ G G D +D V YD W A M RR F ACA V
Sbjct: 122 AAVDGGVEGRKRLVVVG-GWDPETWAPTDSVLVYDFLTGAWRRGAAMPGPRRSFFACAAV 180
Query: 187 NGAVYVAXXXXXXXXXXXXVEVYDPQRNKWTIIESLRRPRWGSFACSFNGKLYIMGGRSS 246
G V+VA YDP + W + + R +GK ++GG
Sbjct: 181 GGKVFVAGGHDEEKNALRSALAYDPDADAWAALPDMAEERDEPRGLCVDGKFLVVGGYP- 239
Query: 247 FTIGNSRFI---DVYDPILHSWTEIKKG------CVMVTSHAV-INKRLFCIEWKN--QR 294
T RF+ + +DP +W+ +++G C S A R++ + + R
Sbjct: 240 -TPAQGRFVGSAEWFDPATSTWSAVQEGFVDDGACPRTCSAAPEAGDRMYMLRDGHLVAR 298
Query: 295 SLAIFNPSDSSWQKI-PVPLTGSSATLFSLGVLDGKLLLFSQEEEPGYQTL 344
AI + + ++W+ + PVP +A S+ + DG++++ + G QT+
Sbjct: 299 HGAISS-APAAWRPVAPVPEDARTAAAVSV-IPDGRVVVIGSDCHGGDQTV 347
>Os11g0138700 Cyclin-like F-box domain containing protein
Length = 415
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 83/205 (40%), Gaps = 12/205 (5%)
Query: 42 LPEDLAKVCLALVPRSYFPVMGAVSKSWMSFIGSKEFIAVRKEVGRLEERIYALITGDGG 101
LP+DL CLA VPR+ P + AVS+ + + + S F+ +R+ L + AL D G
Sbjct: 53 LPDDLLLECLARVPRASLPPLPAVSRRFATLLASDAFLHLRRAHAHLRPSLLALSVSDNG 112
Query: 102 KGPYWEVLGSLEQQNRMLPPMPGLTKAGFSVVVLDGKLLVMAGYGVDYGKECV---SDEV 158
P +L + +P + ++ G + V G++
Sbjct: 113 CVPQ-----ALLRFESSVPVLEVAPLPLPPTLLHCGGSVFAHARAVVLGRDVFLIGRGAT 167
Query: 159 YQYDARLNRWAALAKMNVARRDFACAEVNGAVYVAXXXXXXXXXXXXVEVYDPQRNKWTI 218
+ DA A A R+ FA A V +YVA VE YDP+ + W +
Sbjct: 168 LRVDALTGAARACAPTLFPRKKFAAAAVGDRIYVAGGSARTAA----VEEYDPEVDAWRV 223
Query: 219 IESLRRPRWGSFACSFNGKLYIMGG 243
+ R R+G S G Y+ GG
Sbjct: 224 VGEAPRRRYGCAGASAGGVFYVAGG 248
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,732,642
Number of extensions: 574748
Number of successful extensions: 1266
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 1228
Number of HSP's successfully gapped: 12
Length of query: 375
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 273
Effective length of database: 11,709,973
Effective search space: 3196822629
Effective search space used: 3196822629
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)