Os06g0594400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os06g0594400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 541.14 | 1.09 | 10.8 | -2.81 | 8.67 | 7.13 | 7.62 | 3.75 | -0.925 | 15.4 | 70.73 | 871 | 15.3 | 10.5 |
| 539.93 | 1.08 | 10.8 | -2.5 | 8.72 | 7.37 | 4.63 | -- | -1.08 | 15.4 | 68.85 | 916 | 15.1 | 10.6 |
| 629.84 | 1.17 | 10.8 | -2.36 | 10.5 | 9.31 | -- | -0.515 | -1.22 | 15.6 | 68.03 | 894 | 15.5 | 10.3 |
| 607.3 | 1.15 | 10.8 | -2.45 | 8.4 | 6.93 | -- | -- | -1.13 | 15.4 | 68.93 | 944 | 15.3 | 9.9 |
| 1619.5 | 1.88 | 10.7 | -3.07 | -- | -2.06 | -- | -1.95 | -0.819 | -- | 70.49 | 8428 | 18.3 | 10.5 |
| 950.86 | 1.45 | 10.6 | -3.05 | 4.2 | -- | 4.77 | -- | -0.758 | 14 | -- | -- | -- | -- |
| 1037.35 | 1.51 | 10.6 | -2.91 | 4.2 | -- | -- | -- | -0.732 | 13.9 | -- | -- | -- | -- |
| 1165.88 | 1.59 | 10.7 | -1.06 | -- | -2.66 | -- | -- | -0.916 | -- | 39.31 | 27552 | 18.3 | 11.3 |
| 768.39 | 1.29 | 10.7 | -- | 8.46 | 7.1 | -- | -- | -0.808 | 15.4 | 68 | 952 | 15.1 | 10.1 |
| 2103.78 | 2.14 | 10.7 | -3.08 | -- | -- | -- | -- | -0.828 | -- | -- | -- | -- | -- |
| 1260.56 | 1.66 | 10.6 | -- | 4.25 | -- | -- | -- | -0.408 | 13.9 | -- | -- | -- | -- |
| 1256.49 | 1.65 | 10.6 | -- | -- | -2.98 | -- | -- | -0.283 | -- | 35.98 | 40502 | 18.3 | 11.6 |
| 2354.47 | 2.26 | 10.6 | -- | -- | -- | -- | -- | -0.486 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 589.13 | wind | 3.0 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 2 | 591.54 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 17 | 5 |
| 9 | 599.84 | humidity | 70.0 | 720 | > th | dose independent | sin | 12 | NA |
| 12 | 601.96 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 9 |
| 14 | 603.34 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 17 |
| 27 | 609.30 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 34 | 611.72 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 57 | 614.90 | humidity | 70.0 | 720 | < th | dose independent | sin | 12 | NA |
| 64 | 618.59 | humidity | 70.0 | 720 | < th | dose independent | rect. | 17 | 3 |
| 84 | 620.17 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 3 |
| 88 | 620.82 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 3 |
| 127 | 627.89 | wind | 5.0 | 270 | < th | dose dependent | rect. | 1 | 3 |
| 129 | 628.52 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 133 | 629.41 | humidity | 50.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 134 | 629.81 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 161 | 632.74 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 3 | 3 |
| 162 | 632.74 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 167 | 634.65 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 16 |
| 168 | 634.66 | wind | 3.0 | 270 | < th | dose independent | rect. | 1 | 3 |
| 174 | 636.12 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 195 | 637.52 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 9 |
| 238 | 640.37 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 18 | 9 |
| 253 | 640.72 | temperature | 30.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 268 | 640.98 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 3 |
| 269 | 640.98 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 3 |
| 310 | 642.63 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 3 | 3 |
| 311 | 642.75 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 3 | 3 |
| 333 | 643.84 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 3 |
| 334 | 643.84 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 3 |
| 340 | 645.16 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 17 | 10 |
| 347 | 646.52 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 16 |
| 348 | 646.52 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 16 |
| 355 | 647.48 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 3 |
| 365 | 647.91 | humidity | 80.0 | 720 | < th | dose dependent | sin | 12 | NA |
| 370 | 648.06 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 10 |
| 371 | 648.16 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 7 | 20 |
| 396 | 650.08 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 3 | 3 |
| 403 | 650.66 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 3 |
| 404 | 650.71 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 406 | 650.77 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 407 | 650.87 | wind | 9.0 | 90 | < th | dose independent | rect. | 6 | 21 |
| 413 | 651.15 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 3 | 3 |
| 421 | 651.93 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 5 |
| 436 | 652.95 | radiation | 10.0 | 90 | < th | dose independent | rect. | 3 | 3 |
| 445 | 653.39 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 448 | 653.39 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 451 | 653.39 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 452 | 653.39 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 3 | 3 |
| 457 | 653.39 | temperature | 10.0 | 90 | > th | dose independent | rect. | 6 | 21 |
| 468 | 654.12 | radiation | 1.0 | 90 | < th | dose independent | rect. | 17 | 10 |
| 483 | 655.48 | wind | 9.0 | 270 | < th | dose independent | rect. | 4 | 21 |
| 484 | 655.63 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 10 |
| 496 | 656.42 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 3 |
| 499 | 656.42 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 3 |
| 502 | 656.42 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 3 |
| 503 | 656.42 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 3 |
| 505 | 656.42 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 3 |
| 510 | 656.42 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 21 |
| 511 | 656.42 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 3 |
| 527 | 657.10 | wind | 9.0 | 10 | < th | dose independent | rect. | 6 | 21 |
| 552 | 657.73 | radiation | 10.0 | 10 | < th | dose independent | rect. | 3 | 3 |
| 554 | 657.87 | temperature | 15.0 | 10 | > th | dose independent | rect. | 6 | 21 |
| 559 | 658.02 | temperature | 10.0 | 10 | > th | dose independent | rect. | 3 | 3 |
| 562 | 658.02 | humidity | 50.0 | 10 | > th | dose independent | rect. | 3 | 3 |
| 565 | 658.02 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 3 | 3 |
| 566 | 658.02 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 3 | 3 |
| 583 | 659.02 | humidity | 90.0 | 90 | > th | dose independent | rect. | 3 | 2 |
| 646 | 661.58 | temperature | 30.0 | 90 | < th | dose independent | rect. | 18 | 9 |
| 673 | 663.00 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 801 | 665.15 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 3 |
| 812 | 665.76 | humidity | 60.0 | 90 | > th | dose independent | rect. | 18 | 9 |
| 918 | 669.22 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 15 |
| 919 | 669.22 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 15 |
| 938 | 670.16 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 952 | 670.83 | temperature | 15.0 | 30 | > th | dose independent | rect. | 19 | 8 |
| 968 | 671.15 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 19 | 8 |
| 974 | 671.15 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 16 |
| 976 | 671.15 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 3 | 16 |
| 989 | 671.77 | humidity | 90.0 | 10 | > th | dose independent | rect. | 3 | 3 |