BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0594400 Os06g0594400|AK065435
(381 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0594400 Cyclin-like F-box domain containing protein 652 0.0
Os02g0208700 Galactose oxidase, central domain containing p... 272 3e-73
Os11g0246200 Cyclin-like F-box domain containing protein 110 2e-24
Os02g0563000 98 9e-21
>Os06g0594400 Cyclin-like F-box domain containing protein
Length = 381
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/381 (87%), Positives = 335/381 (87%)
Query: 1 MGYNELIPGLPEEVARECLIRVGFDQLPAVRRISRQWKAEVESPAYNRLRKAEGLARPAL 60
MGYNELIPGLPEEVARECLIRVGFDQLPAVRRISRQWKAEVESPAYNRLRKAEGLARPAL
Sbjct: 1 MGYNELIPGLPEEVARECLIRVGFDQLPAVRRISRQWKAEVESPAYNRLRKAEGLARPAL 60
Query: 61 ALVQARRELAEAGPAADKQSSAGGVPGNSYRMVLLDPAEGRWTPLPEVGGASGSLPLFCQ 120
ALVQARRELAEAGPAADKQSSAGGVPGNSYRMVLLDPAEGRWTPLPEVGGASGSLPLFCQ
Sbjct: 61 ALVQARRELAEAGPAADKQSSAGGVPGNSYRMVLLDPAEGRWTPLPEVGGASGSLPLFCQ 120
Query: 121 VAAVDGGVEGRKRLVVVGGWDPETWAPTDSVLVYDFLTGAWRRGAAMPGPRRSXXXXXXX 180
VAAVDGGVEGRKRLVVVGGWDPETWAPTDSVLVYDFLTGAWRRGAAMPGPRRS
Sbjct: 121 VAAVDGGVEGRKRLVVVGGWDPETWAPTDSVLVYDFLTGAWRRGAAMPGPRRSFFACAAV 180
Query: 181 XXXXXXXXXHDEEKNALRSXXXXXXXXXXXXXXXXXXEERDEPRGLCVDGKFLVVGGYPT 240
HDEEKNALRS EERDEPRGLCVDGKFLVVGGYPT
Sbjct: 181 GGKVFVAGGHDEEKNALRSALAYDPDADAWAALPDMAEERDEPRGLCVDGKFLVVGGYPT 240
Query: 241 PAQGRFVGSAEWFDPATSTWSAVQEGFVDDGACPRTCSAAPEAGDRMYMLRDGHLVARHG 300
PAQGRFVGSAEWFDPATSTWSAVQEGFVDDGACPRTCSAAPEAGDRMYMLRDGHLVARHG
Sbjct: 241 PAQGRFVGSAEWFDPATSTWSAVQEGFVDDGACPRTCSAAPEAGDRMYMLRDGHLVARHG 300
Query: 301 AISSXXXXXXXXXXXXEDARTAAAVSVIPDGRVVVIGSDCHGGDQTVYTLREEAGKPASW 360
AISS EDARTAAAVSVIPDGRVVVIGSDCHGGDQTVYTLREEAGKPASW
Sbjct: 301 AISSAPAAWRPVAPVPEDARTAAAVSVIPDGRVVVIGSDCHGGDQTVYTLREEAGKPASW 360
Query: 361 ARAPAPPEFSGHVQAACLLEI 381
ARAPAPPEFSGHVQAACLLEI
Sbjct: 361 ARAPAPPEFSGHVQAACLLEI 381
>Os02g0208700 Galactose oxidase, central domain containing protein
Length = 375
Score = 272 bits (696), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 172/324 (53%), Positives = 195/324 (60%), Gaps = 14/324 (4%)
Query: 55 LARPALALVQARRELAEAGPAADKQSSAGGVPGNSYRMVLLDPAEGRWTPLPEVGGASGS 114
+ARP LAL QA LA AGPA + SYR+VL DP G W LP + GA G
Sbjct: 1 MARPLLALAQAEPPLAAAGPANKYAGLS-----TSYRLVLHDPVAGGWAALPPLPGAGG- 54
Query: 115 LPLFCQVAAVDGGVEGRKRLVVVGGWDPETWAPTDSVLVYDFLTGAWRRGAAMPGPRRSX 174
LPLFCQ+AAV R+RLVVVGGWDPETWAPTD+V VYDFL+G+WRRGAAMPGPRRS
Sbjct: 55 LPLFCQLAAVAACGGERRRLVVVGGWDPETWAPTDAVHVYDFLSGSWRRGAAMPGPRRSF 114
Query: 175 XXXXXXXXXXXXXXXHDEEKNALRSXXXXXXXXXXXXXXXXXXEERDEPRGLCVDGKFLV 234
HDEEKNALRS ERDE RG+CV G+F+
Sbjct: 115 FACAAVGRWVFVAGGHDEEKNALRSAVAYDAEADAWVPLPDMAAERDEARGVCVGGRFVA 174
Query: 235 VGGYPTPAQGRFVGSAEWFDPATSTWSAVQEGFVDDGACPRTCS--AAPEAGDRMYMLRD 292
VGGYPT AQGRF GSAE FDPA W VQE +D+G CPRTC AP AG MYMLRD
Sbjct: 175 VGGYPTEAQGRFAGSAEAFDPAAWAWGPVQERVLDEGTCPRTCCAAPAPAAGATMYMLRD 234
Query: 293 GHLVARHGAISSXXXXXXXXXXXXEDARTAAAVSVIPDGRVVVIGSDCHGGDQTVYTLR- 351
GHL AR A ++ ED R A++ I DGRVV IG+ HGG+Q VY L
Sbjct: 235 GHLAARD-ATNNGGAAWRAVASLPEDGRAVTALAAIGDGRVVAIGAGSHGGEQAVYLLTT 293
Query: 352 ----EEAGKPASWARAPAPPEFSG 371
++ G SWARA APPEF+G
Sbjct: 294 GEGGDKNGAAQSWARAAAPPEFAG 317
>Os11g0246200 Cyclin-like F-box domain containing protein
Length = 383
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 118/262 (45%), Gaps = 16/262 (6%)
Query: 3 YNELIPGLPEEVARECLIRVGFDQLPAVRRISRQWKAEVESPAYNRLRKAEGLARPALAL 62
+ ELIPG+P++VA +CL RV A+RR+ R W++ +PA+ R G + L
Sbjct: 20 HVELIPGMPDDVAVDCLARVPHGAHRAMRRVCRGWRSAAATPAFAMARAEAGANEDLVYL 79
Query: 63 VQARRELAEAGPAADKQSSAGGVPGNS--YRMVLLDPAEGRWTPLPEVGGASGSLPLFCQ 120
+Q A A A + + G P NS Y + + + G W A+ +P+F Q
Sbjct: 80 LQFANPAAAAAAAEEAKED-GDAPANSPAYGVAVYNVTTGEW----RREKAAPPVPMFAQ 134
Query: 121 VAAVDGGVEGRKRLVVVGGWDPETWAPTDSVLVYDFLTGAWRRGAAMPGPRRSXXXXXXX 180
AAV RL V+GGWDPET+ P V V D TG WR M RS
Sbjct: 135 CAAVG------TRLAVLGGWDPETFEPVADVHVLDASTGVWRSAPPMRSA-RSFFACAEA 187
Query: 181 XXXXXXXXXHDEEKNALRSXXXXXXXXXXXXXXXXXXEERDEPRGLCV--DGKFLVVGGY 238
HD+ KNAL++ EERDE G+ +FL V GY
Sbjct: 188 GGRIYVAGGHDKHKNALKTAEAYDAVADAWDPLPDMSEERDECDGMATVAGDRFLAVSGY 247
Query: 239 PTPAQGRFVGSAEWFDPATSTW 260
T QG F AEWFDPA W
Sbjct: 248 RTARQGGFERDAEWFDPAARAW 269
>Os02g0563000
Length = 391
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 150/386 (38%), Gaps = 26/386 (6%)
Query: 5 ELIPGLPEEVARECLIRVGFDQLPAVRRISRQWKAEVESPAYNRLRKAEGLARPALALVQ 64
ELIPGLP++VA ECL RV AVRR+ R W+ S A+ R R+A G A + LVQ
Sbjct: 23 ELIPGLPDDVAMECLARVPSRSHRAVRRVCRGWRRAAASEAFRRRRRAAGAAEDVVFLVQ 82
Query: 65 ARRELAEAGPAADKQSSAGGVPGNSYRMVLLDPAEGRWTPL-----PEVGGASGSLPLFC 119
A PA G + + G W + E G +P F
Sbjct: 83 AT-------PARGGDDGKGPSAATECALAAANLTTGEWRRVEGAGEGEEEAWGGGVPFFA 135
Query: 120 QVAAVDGGVEGRKRLVVVGGWDPETWAPTDSVLVYDFLTGAWRRGAAMPGPRRSXXXXXX 179
+ AA G + + VVGGW+P T V V D G WRRGAAMP R
Sbjct: 136 RCAAAGDG----RHVAVVGGWEPAALCLTRDVRVLDVPAGVWRRGAAMP-DSRGFFGCTG 190
Query: 180 XXXXXXXXXXHDEEKNALRSXXXXXXXXXXXXXXXXXXEERDEPRGLCVDGKFLVVGGYP 239
HDE KNALRS EERDEP+ + G+ L GYP
Sbjct: 191 SGGVVYVAGGHDESKNALRSAYAYDVASDAWRALPDMSEERDEPQLVANPGRVLAASGYP 250
Query: 240 TPAQGRFVGSAEWFDPA----TSTWSAVQEGFVDDGACPRTCSAAPEAGDRMYMLRDGHL 295
T AQG F +AE + + WS+ EG + TC AA G +++ + G
Sbjct: 251 TDAQGAFKKTAERYTTTTTGDATAWSS--EGDMAPNTA-ETCLAA--VGGKVWAVGAGKG 305
Query: 296 VARHGAISSXXXXXXXXXXXXEDARTAAAVSVIPDGRVVVIGSDCHGGDQTVYTLREEAG 355
R + + A V + G Q + E+AG
Sbjct: 306 GVREWDGGAWRDVADGPPGMKACVKAVGAGDGDGAAMFVFVFGKVEDGKQYAAWVMEDAG 365
Query: 356 KPASWARAPAPPEFSGHVQAACLLEI 381
A W PP F G V + + +
Sbjct: 366 GAARWRGVAVPPGFGGFVYSGAAVRV 391
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.135 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,345,292
Number of extensions: 658109
Number of successful extensions: 1895
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1876
Number of HSP's successfully gapped: 4
Length of query: 381
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 278
Effective length of database: 11,657,759
Effective search space: 3240857002
Effective search space used: 3240857002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)