Os02g0208700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Galactose oxidase, central domain containing protein.
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Os02g0208700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Galactose oxidase, central domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 134.5 | 0.545 | 2.87 | -0.289 | 0.111 | -0.637 | -0.574 | 2.77 | 0.108 | 18.8 | 1 | 16 | -- | -- |
| 140.7 | 0.552 | 2.84 | -0.182 | 0.0601 | -0.407 | -0.541 | -- | 0.136 | 20.4 | 1.007 | 14 | -- | -- |
| 135.29 | 0.542 | 2.87 | -0.277 | 0.118 | -0.649 | -- | 2.7 | 0.108 | 17.8 | 1.028 | 16 | -- | -- |
| 140.04 | 0.555 | 2.84 | -0.159 | 0.0894 | -0.385 | -- | -- | 0.148 | 17.7 | 1.2 | 9 | -- | -- |
| 135.91 | 0.543 | 2.87 | -0.27 | -- | -0.584 | -- | 2.63 | 0.106 | -- | 1.052 | 16 | -- | -- |
| 145.08 | 0.565 | 2.84 | -0.129 | 0.0233 | -- | -0.493 | -- | 0.134 | 21.2 | -- | -- | -- | -- |
| 145.8 | 0.565 | 2.84 | -0.114 | 0.055 | -- | -- | -- | 0.133 | 1.78 | -- | -- | -- | -- |
| 140.41 | 0.554 | 2.84 | -0.157 | -- | -0.353 | -- | -- | 0.145 | -- | 1.169 | 9 | -- | -- |
| 140.7 | 0.555 | 2.84 | -- | 0.0881 | -0.372 | -- | -- | 0.165 | 17.7 | 1.184 | 9 | -- | -- |
| 145.99 | 0.565 | 2.84 | -0.112 | -- | -- | -- | -- | 0.134 | -- | -- | -- | -- | -- |
| 146.14 | 0.565 | 2.84 | -- | 0.0529 | -- | -- | -- | 0.146 | 1.72 | -- | -- | -- | -- |
| 141.06 | 0.555 | 2.83 | -- | -- | -0.341 | -- | -- | 0.162 | -- | 1.169 | 9 | -- | -- |
| 146.31 | 0.565 | 2.84 | -- | -- | -- | -- | -- | 0.147 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 118.16 | temperature | 30.0 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 31 | 118.33 | temperature | 30.0 | 90 | > th | dose independent | rect. | 8 | 1 |
| 126 | 121.38 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 144 | 121.69 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 160 | 121.72 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 162 | 121.83 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 164 | 121.85 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 166 | 121.87 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 167 | 121.88 | temperature | 20.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 168 | 121.88 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 170 | 121.90 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 173 | 121.95 | wind | 5.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 175 | 121.98 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 176 | 121.98 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 178 | 122.00 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 183 | 122.03 | wind | 1.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 184 | 122.03 | wind | 9.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 186 | 122.03 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 188 | 122.03 | temperature | 10.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 190 | 122.03 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 191 | 122.03 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 192 | 122.03 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 195 | 122.03 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 200 | 122.03 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 202 | 122.03 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 204 | 122.03 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 209 | 122.03 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 214 | 122.03 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 215 | 122.03 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 1 |
| 216 | 122.03 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 217 | 122.03 | temperature | 10.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 218 | 122.03 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 219 | 122.03 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 224 | 122.03 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 229 | 122.03 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 230 | 122.03 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 231 | 122.04 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 234 | 122.04 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 238 | 122.04 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 244 | 122.04 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 245 | 122.04 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 265 | 122.04 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 268 | 122.04 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 271 | 122.05 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 278 | 122.11 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 292 | 122.22 | wind | 1.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 297 | 122.31 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 300 | 122.37 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 316 | 122.39 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 329 | 122.79 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 352 | 123.18 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 356 | 123.23 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 368 | 123.52 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 369 | 123.52 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 372 | 123.52 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 376 | 123.52 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 385 | 123.52 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 386 | 123.52 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 406 | 123.52 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 409 | 123.52 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 435 | 123.86 | wind | 1.0 | 10 | > th | dose independent | rect. | 21 | 23 |
| 501 | 124.82 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 537 | 126.34 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 538 | 126.34 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 554 | 128.01 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 556 | 128.33 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 557 | 128.40 | wind | 9.0 | 30 | < th | dose independent | rect. | 21 | 23 |
| 560 | 128.95 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 9 | 1 |
| 587 | 130.10 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 21 | 23 |
| 588 | 130.10 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 592 | 130.42 | humidity | 50.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 655 | 132.80 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 657 | 132.82 | humidity | 70.0 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 658 | 132.84 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 746 | 133.85 | humidity | 50.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 785 | 134.26 | wind | 1.0 | 10 | < th | dose independent | rect. | 8 | 19 |
| 798 | 134.65 | wind | 1.0 | 10 | > th | dose independent | rect. | 21 | 12 |
| 799 | 134.66 | humidity | 70.0 | 720 | > th | dose independent | rect. | 3 | 6 |
| 800 | 134.68 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 4 |
| 813 | 134.94 | wind | 1.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 817 | 135.09 | humidity | 70.0 | 90 | < th | dose independent | rect. | 8 | 1 |
| 832 | 135.34 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 3 | 6 |
| 841 | 135.47 | temperature | 30.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 849 | 135.62 | wind | 1.0 | 10 | < th | dose independent | rect. | 2 | 8 |
| 883 | 135.92 | wind | 1.0 | 10 | > th | dose independent | sin | 5 | NA |
| 890 | 135.98 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 892 | 135.99 | wind | 1.0 | 10 | > th | dose independent | no | NA | NA |
| 902 | 136.11 | temperature | 30.0 | 30 | > th | dose independent | sin | 8 | NA |
| 904 | 136.12 | humidity | 90.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 907 | 136.16 | temperature | 30.0 | 90 | < th | dose independent | sin | 9 | NA |
| 913 | 136.22 | wind | 1.0 | 10 | > th | dose independent | sin | 15 | NA |
| 924 | 136.29 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 20 | 7 |
| 925 | 136.30 | radiation | 40.0 | 10 | > th | dose independent | rect. | 9 | 1 |
| 998 | 136.76 | wind | 1.0 | 10 | > th | dose independent | rect. | 16 | 23 |