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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0138700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.5 (0.0523) R2 : 0.226
β1 : -0.825 (0.2) R2dD : 0.0369 R2D : -0.0353
β2 : 0.87 (0.125) R2dC : 0.0833 R2C : 0.0256
β3 : -0.753 (0.303) R2dE : 0.031 R2E : -0.094
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 4.25 (0.857) R2dD*E : 0.107 R2D*E : 0.0156
γ1 : -0.656 (0.114) R2dN8 : 0.0865 R2N8 : 0.0591
σ : 0.928
deviance : 396.9
__
_____
C
peak time of C : 8.54
E
wheather : humidity
threshold : 51.47
memory length : 4432
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
391.62 0.93 5.51 -0.785 0.859 -0.754 -1.28 4.29 -0.654 8.76 51.43 4432 -- --
414.92 0.949 5.42 -0.775 0.843 -0.204 -1.21 -- -0.723 8.77 68.35 2669 -- --
396.9 0.928 5.5 -0.825 0.87 -0.753 -- 4.25 -0.656 8.54 51.47 4432 -- --
418.55 0.953 5.42 -0.822 0.884 -0.279 -- -- -0.723 8.75 68 1322 -- --
439.21 0.976 5.53 -0.81 -- -0.702 -- 4.24 -0.655 -- 51.75 4432 -- --
416.46 0.957 5.42 -0.723 0.864 -- -1.25 -- -0.732 8.71 -- -- -- --
421.47 0.961 5.42 -0.766 0.874 -- -- -- -0.733 8.49 -- -- -- --
443.91 0.981 5.44 -0.551 -- 0.97 -- -- -0.84 -- 42 5495 -- --
435.95 0.972 5.4 -- 0.873 -0.155 -- -- -0.646 8.64 69 1337 -- --
464.2 1.01 5.44 -0.762 -- -- -- -- -0.725 -- -- -- -- --
436.94 0.978 5.4 -- 0.871 -- -- -- -0.648 8.55 -- -- -- --
445.8 0.983 5.44 -- -- 1.24 -- -- -0.727 -- 42.81 5489 -- --
479.52 1.02 5.42 -- -- -- -- -- -0.64 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 390.36 wind 5.0 10 < th dose independent rect. 16 10
3 390.92 temperature 25.0 720 < th dose dependent rect. 13 1
7 392.70 temperature 20.0 30 > th dose dependent rect. 21 3
8 392.80 humidity 50.0 4320 > th dose independent rect. 11 4
9 392.87 wind 3.0 10 < th dose dependent rect. 22 1
12 393.10 precipitation 0.1 10 < th dose independent rect. 16 10
13 393.10 precipitation 0.1 10 < th dose dependent rect. 16 10
14 393.12 humidity 60.0 4320 < th dose dependent rect. 13 1
16 393.20 temperature 25.0 10 < th dose dependent rect. 12 4
18 393.25 humidity 50.0 4320 > th dose independent rect. 24 15
19 393.25 temperature 20.0 10 > th dose independent rect. 6 19
22 393.32 humidity 50.0 4320 > th dose independent rect. 2 13
26 393.41 temperature 25.0 30 < th dose independent rect. 12 18
27 393.43 humidity 50.0 4320 > th dose independent rect. 20 19
29 393.45 wind 3.0 14400 > th dose independent rect. 1 1
43 393.68 humidity 50.0 4320 > th dose independent rect. 6 9
47 393.72 temperature 25.0 270 < th dose dependent rect. 11 5
55 393.99 temperature 20.0 90 > th dose independent rect. 1 2
56 393.99 radiation 10.0 4320 > th dose independent rect. 10 21
57 394.02 wind 3.0 14400 < th dose independent rect. 1 1
60 394.13 temperature 20.0 30 > th dose dependent rect. 1 3
62 394.17 wind 1.0 14400 < th dose dependent rect. 8 5
66 394.22 radiation 20.0 10 < th dose dependent rect. 16 10
67 394.24 radiation 10.0 4320 < th dose independent rect. 10 21
68 394.27 radiation 10.0 720 < th dose dependent rect. 12 1
70 394.28 atmosphere 1015.0 4320 < th dose independent rect. 18 2
72 394.30 radiation 10.0 720 < th dose independent rect. 12 1
76 394.38 atmosphere 1005.0 90 > th dose dependent rect. 2 1
77 394.39 radiation 30.0 4320 < th dose dependent rect. 11 1
83 394.47 radiation 10.0 4320 > th dose independent rect. 10 2
86 394.48 wind 1.0 14400 > th dose independent rect. 9 4
87 394.49 wind 1.0 14400 > th dose independent rect. 12 1
95 394.55 temperature 10.0 30 > th dose dependent rect. 17 9
96 394.56 wind 1.0 14400 < th dose independent rect. 8 5
97 394.56 humidity 60.0 4320 < th dose dependent rect. 9 6
124 394.69 humidity 50.0 4320 > th dose independent sin 5 NA
126 394.70 radiation 30.0 4320 < th dose dependent rect. 10 3
167 394.89 temperature 20.0 10 > th dose independent rect. 4 21
169 394.89 temperature 20.0 10 > th dose dependent rect. 21 13
187 395.05 radiation 20.0 4320 < th dose dependent rect. 10 21
189 395.09 temperature 25.0 270 < th dose dependent rect. 10 11
192 395.13 wind 1.0 14400 < th dose independent rect. 12 1
205 395.23 temperature 25.0 10 < th dose independent rect. 19 11
213 395.27 atmosphere 1010.0 10 < th dose dependent rect. 2 1
217 395.30 humidity 60.0 4320 < th dose dependent sin 6 NA
235 395.33 temperature 20.0 10 > th dose independent rect. 1 3
236 395.33 radiation 10.0 4320 > th dose independent rect. 10 7
244 395.36 wind 3.0 30 < th dose independent rect. 21 2
256 395.45 radiation 40.0 4320 < th dose dependent rect. 3 3
259 395.48 wind 1.0 14400 < th dose dependent rect. 12 1
261 395.49 radiation 10.0 4320 > th dose independent rect. 13 19
270 395.54 radiation 10.0 4320 < th dose dependent rect. 9 5
271 395.54 radiation 20.0 4320 < th dose dependent rect. 10 7
292 395.65 radiation 20.0 4320 < th dose dependent rect. 10 12
293 395.66 humidity 60.0 4320 < th dose independent rect. 9 2
301 395.68 humidity 50.0 4320 > th dose independent rect. 16 23
304 395.68 temperature 30.0 30 < th dose dependent rect. 13 17
305 395.68 radiation 20.0 4320 < th dose dependent rect. 10 18
307 395.69 radiation 30.0 43200 < th dose independent rect. 17 10
308 395.69 wind 5.0 14400 < th dose dependent rect. 1 1
321 395.74 temperature 25.0 720 < th dose independent rect. 12 1
324 395.75 temperature 25.0 720 < th dose independent rect. 11 3
328 395.76 radiation 10.0 30 < th dose independent rect. 16 10
330 395.76 precipitation 0.1 30 < th dose independent rect. 2 15
331 395.76 precipitation 0.1 30 < th dose dependent rect. 2 15
334 395.77 atmosphere 1015.0 30 < th dose independent rect. 17 9
339 395.78 humidity 90.0 14400 < th dose dependent rect. 1 6
340 395.79 humidity 90.0 10 > th dose independent rect. 24 14
354 395.84 humidity 50.0 4320 > th dose independent rect. 11 20
355 395.85 wind 3.0 14400 > th dose independent rect. 18 14
357 395.85 humidity 50.0 4320 > th dose independent rect. 11 17
359 395.85 temperature 25.0 10 < th dose dependent sin 21 NA
379 395.88 humidity 50.0 4320 > th dose independent rect. 11 11
398 395.90 atmosphere 1015.0 4320 < th dose independent rect. 14 6
405 395.92 temperature 20.0 10 > th dose independent rect. 1 5
414 395.95 wind 7.0 30 < th dose independent rect. 2 15
424 395.98 humidity 50.0 4320 > th dose independent rect. 11 14
456 396.04 atmosphere 1015.0 4320 > th dose independent rect. 13 7
473 396.12 radiation 1.0 4320 > th dose dependent rect. 11 2
475 396.13 wind 3.0 14400 < th dose independent rect. 18 13
480 396.15 atmosphere 1000.0 270 > th dose independent rect. 23 4
501 396.20 temperature 25.0 10 < th dose dependent rect. 2 22
506 396.22 temperature 25.0 90 < th dose independent rect. 12 4
510 396.24 humidity 50.0 10 > th dose independent rect. 17 9
520 396.26 radiation 10.0 4320 < th dose independent rect. 10 12
523 396.26 wind 1.0 10 < th dose dependent rect. 2 1
524 396.26 radiation 40.0 4320 < th dose dependent rect. 1 5
533 396.27 radiation 10.0 4320 < th dose independent rect. 10 9
547 396.28 radiation 10.0 4320 < th dose independent rect. 10 18
550 396.28 humidity 50.0 4320 > th dose independent rect. 24 22
560 396.30 humidity 50.0 4320 > th dose independent rect. 2 20
588 396.34 atmosphere 1015.0 4320 > th dose dependent rect. 9 12
589 396.35 humidity 60.0 4320 > th dose independent rect. 9 2
591 396.35 temperature 25.0 270 < th dose independent rect. 11 10
630 396.40 wind 3.0 14400 > th dose independent rect. 23 8
636 396.40 humidity 50.0 4320 > th dose independent rect. 6 22
646 396.41 humidity 50.0 4320 > th dose independent no NA NA
648 396.41 humidity 90.0 30 < th dose independent rect. 22 21
654 396.42 humidity 50.0 4320 > th dose independent rect. 8 14
666 396.43 humidity 50.0 4320 > th dose independent rect. 6 16
672 396.43 atmosphere 1015.0 4320 > th dose dependent rect. 11 9
685 396.45 temperature 10.0 30 > th dose independent rect. 17 9
694 396.45 temperature 10.0 30 > th dose independent rect. 2 15
697 396.45 atmosphere 1015.0 30 < th dose independent rect. 2 15
736 396.48 humidity 70.0 14400 < th dose dependent rect. 21 11
741 396.49 humidity 90.0 30 < th dose independent rect. 22 12
756 396.51 atmosphere 995.0 30 > th dose independent rect. 2 15
763 396.52 humidity 70.0 14400 < th dose dependent rect. 6 2
813 396.59 temperature 25.0 30 < th dose dependent rect. 2 20
829 396.63 radiation 1.0 43200 < th dose dependent rect. 3 1
835 396.64 wind 9.0 30 < th dose independent rect. 17 9
852 396.66 humidity 70.0 14400 < th dose independent rect. 6 2
865 396.67 wind 3.0 14400 < th dose independent rect. 23 8
875 396.68 wind 3.0 14400 > th dose independent sin 11 NA
876 396.68 humidity 50.0 4320 < th dose independent rect. 12 1
884 396.69 radiation 10.0 4320 < th dose independent sin 14 NA
910 396.72 radiation 10.0 4320 > th dose independent sin 22 NA
926 396.73 humidity 60.0 4320 > th dose independent rect. 24 11
942 396.75 humidity 60.0 4320 > th dose independent rect. 2 9
953 396.76 wind 9.0 720 < th dose dependent rect. 3 6
956 396.77 humidity 60.0 4320 > th dose independent rect. 20 15
960 396.78 atmosphere 1015.0 4320 < th dose independent rect. 14 1
963 396.78 humidity 70.0 14400 > th dose independent rect. 22 10
973 396.79 radiation 1.0 4320 > th dose dependent rect. 4 2