Os02g0114600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os02g0114600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.79 | 0.239 | 11.3 | -0.237 | 0.251 | -0.259 | 0.569 | -0.816 | -0.133 | 16.8 | 39.72 | 10 | -- | -- |
| 27.13 | 0.243 | 11.3 | -0.222 | 0.246 | -0.269 | 0.676 | -- | -0.134 | 16.4 | 41.26 | 14 | -- | -- |
| 26.57 | 0.24 | 11.3 | -0.237 | 0.257 | -0.242 | -- | -0.886 | -0.13 | 16.5 | 39.43 | 8 | -- | -- |
| 28.36 | 0.248 | 11.3 | -0.212 | 0.245 | -0.253 | -- | -- | -0.132 | 16.4 | 40.18 | 14 | -- | -- |
| 29.94 | 0.255 | 11.3 | -0.244 | -- | -0.299 | -- | -0.857 | -0.132 | -- | 39.39 | 8 | -- | -- |
| 29.01 | 0.253 | 11.3 | -0.219 | 0.292 | -- | 0.636 | -- | -0.132 | 15.7 | -- | -- | -- | -- |
| 30.24 | 0.258 | 11.3 | -0.209 | 0.295 | -- | -- | -- | -0.129 | 15.6 | -- | -- | -- | -- |
| 31.72 | 0.262 | 11.3 | -0.202 | -- | -0.269 | -- | -- | -0.14 | -- | 40 | 15 | -- | -- |
| 29.61 | 0.253 | 11.3 | -- | 0.261 | -0.262 | -- | -- | -0.105 | 16.6 | 40.69 | 15 | -- | -- |
| 35.07 | 0.277 | 11.3 | -0.221 | -- | -- | -- | -- | -0.137 | -- | -- | -- | -- | -- |
| 31.38 | 0.262 | 11.3 | -- | 0.299 | -- | -- | -- | -0.105 | 15.6 | -- | -- | -- | -- |
| 32.96 | 0.267 | 11.3 | -- | -- | -0.318 | -- | -- | -0.11 | -- | 40.18 | 14 | -- | -- |
| 36.35 | 0.281 | 11.3 | -- | -- | -- | -- | -- | -0.112 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.19 | wind | 9 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 2 | 25.21 | radiation | 40 | 10 | < th | dose independent | rect. | 4 | 16 |
| 4 | 25.33 | radiation | 40 | 90 | < th | dose independent | rect. | 3 | 16 |
| 6 | 25.37 | humidity | 80 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 8 | 25.41 | humidity | 80 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 9 | 25.42 | humidity | 80 | 14400 | < th | dose dependent | rect. | 21 | 6 |
| 11 | 25.43 | radiation | 40 | 10 | < th | dose independent | rect. | 23 | 23 |
| 13 | 25.44 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 14 | 25.44 | radiation | 40 | 10 | < th | dose independent | rect. | 2 | 18 |
| 15 | 25.44 | humidity | 80 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 25 | 25.46 | humidity | 80 | 14400 | < th | dose dependent | rect. | 21 | 11 |
| 27 | 25.47 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 37 | 25.50 | humidity | 80 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 47 | 25.52 | humidity | 80 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 56 | 25.55 | humidity | 80 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 61 | 25.56 | humidity | 80 | 14400 | < th | dose independent | rect. | 21 | 11 |
| 62 | 25.56 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 71 | 25.59 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 8 |
| 76 | 25.60 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 6 |
| 80 | 25.61 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 4 |
| 92 | 25.64 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 9 | 17 |
| 117 | 25.70 | radiation | 40 | 10 | < th | dose independent | rect. | 11 | 23 |
| 129 | 25.74 | radiation | 30 | 90 | > th | dose dependent | sin | 7 | NA |
| 137 | 25.75 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 140 | 25.76 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 3 | 16 |
| 149 | 25.77 | radiation | 40 | 10 | < th | dose independent | rect. | 13 | 23 |
| 154 | 25.79 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 10 | 23 |
| 163 | 25.81 | atmosphere | 1015 | 30 | < th | dose dependent | rect. | 9 | 17 |
| 166 | 25.82 | radiation | 40 | 10 | > th | dose independent | rect. | 13 | 23 |
| 168 | 25.82 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 183 | 25.83 | radiation | 40 | 10 | < th | dose independent | sin | 0 | NA |
| 187 | 25.83 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 9 | 15 |
| 211 | 25.87 | radiation | 40 | 10 | < th | dose independent | no | NA | NA |
| 216 | 25.87 | radiation | 1 | 90 | > th | dose dependent | rect. | 8 | 8 |
| 217 | 25.88 | radiation | 40 | 10 | > th | dose independent | no | NA | NA |
| 219 | 25.88 | radiation | 40 | 10 | > th | dose independent | rect. | 9 | 6 |
| 396 | 25.88 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 9 | 17 |
| 397 | 25.88 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 405 | 25.89 | wind | 9 | 14400 | > th | dose dependent | rect. | 5 | 10 |
| 413 | 25.90 | radiation | 40 | 90 | < th | dose independent | rect. | 11 | 22 |
| 420 | 25.91 | radiation | 40 | 90 | > th | dose independent | sin | 7 | NA |
| 422 | 25.91 | humidity | 80 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 425 | 25.91 | humidity | 80 | 14400 | < th | dose independent | rect. | 1 | 7 |
| 431 | 25.91 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 8 | 5 |
| 450 | 25.92 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 454 | 25.93 | radiation | 40 | 10 | > th | dose independent | sin | 1 | NA |
| 467 | 25.94 | radiation | 40 | 10 | > th | dose independent | rect. | 11 | 23 |
| 473 | 25.95 | humidity | 80 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 499 | 25.95 | wind | 9 | 14400 | > th | dose dependent | rect. | 20 | 19 |
| 504 | 25.96 | radiation | 40 | 90 | < th | dose independent | rect. | 23 | 22 |
| 533 | 26.00 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 2 | 18 |
| 535 | 26.00 | radiation | 40 | 10 | < th | dose independent | rect. | 2 | 23 |
| 538 | 26.00 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 539 | 26.00 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 545 | 26.01 | radiation | 40 | 90 | < th | dose independent | sin | 7 | NA |
| 564 | 26.02 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 9 | 13 |
| 569 | 26.02 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 571 | 26.02 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 9 | 15 |
| 582 | 26.03 | radiation | 40 | 10 | < th | dose independent | rect. | 24 | 20 |
| 587 | 26.03 | radiation | 30 | 90 | > th | dose dependent | rect. | 14 | 23 |
| 601 | 26.04 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 602 | 26.04 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 668 | 26.08 | wind | 9 | 14400 | > th | dose independent | rect. | 5 | 10 |
| 669 | 26.08 | wind | 9 | 14400 | > th | dose independent | rect. | 3 | 12 |
| 676 | 26.08 | radiation | 20 | 90 | > th | dose dependent | rect. | 8 | 5 |
| 731 | 26.10 | radiation | 40 | 90 | > th | dose independent | rect. | 14 | 23 |
| 732 | 26.10 | radiation | 30 | 90 | > th | dose dependent | no | NA | NA |
| 739 | 26.10 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 961 | 26.12 | radiation | 40 | 90 | > th | dose independent | rect. | 8 | 5 |
| 989 | 26.12 | wind | 9 | 14400 | > th | dose independent | rect. | 20 | 20 |
| 997 | 26.13 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 1 |