Os03g0171600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os03g0171600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.24 | 0.258 | 10.8 | 0.593 | 1.09 | -0.718 | -0.0151 | 0.869 | 0.00454 | 5.96 | 24.59 | 6055 | -- | -- |
| 30 | 0.255 | 10.8 | 0.499 | 1.1 | -0.749 | 0.143 | -- | 0.057 | 5.86 | 23.1 | 8174 | -- | -- |
| 29.52 | 0.253 | 10.8 | 0.745 | 1.09 | -0.756 | -- | 1.34 | 0.0937 | 6.01 | 26.33 | 7398 | -- | -- |
| 29.79 | 0.254 | 10.8 | 0.436 | 1.12 | -0.723 | -- | -- | 0.0121 | 5.92 | 23.07 | 8168 | -- | -- |
| 79.74 | 0.418 | 10.9 | 0.0553 | -- | -0.51 | -- | -0.407 | -0.16 | -- | 26.33 | 7398 | -- | -- |
| 46.26 | 0.319 | 10.9 | -0.0133 | 1.09 | -- | -0.0469 | -- | -0.29 | 6.06 | -- | -- | -- | -- |
| 46.27 | 0.319 | 10.9 | -0.0137 | 1.09 | -- | -- | -- | -0.289 | 6.06 | -- | -- | -- | -- |
| 80.31 | 0.419 | 10.9 | 0.145 | -- | -0.523 | -- | -- | -0.134 | -- | 26.33 | 7398 | -- | -- |
| 32.86 | 0.267 | 10.8 | -- | 1.11 | -0.578 | -- | -- | -0.0723 | 5.88 | 23.6 | 7050 | -- | -- |
| 107.43 | 0.484 | 10.9 | 0.0175 | -- | -- | -- | -- | -0.265 | -- | -- | -- | -- | -- |
| 46.27 | 0.318 | 10.9 | -- | 1.09 | -- | -- | -- | -0.288 | 6.06 | -- | -- | -- | -- |
| 80.85 | 0.42 | 10.9 | -- | -- | -0.514 | -- | -- | -0.152 | -- | 26.33 | 7398 | -- | -- |
| 107.44 | 0.484 | 10.9 | -- | -- | -- | -- | -- | -0.267 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.94 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 4 |
| 3 | 29.02 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 4 |
| 6 | 29.06 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 16 |
| 20 | 29.20 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 21 | 29.20 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 10 |
| 30 | 29.23 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 7 |
| 34 | 29.24 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 5 |
| 41 | 29.28 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 83 | 29.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 127 | 29.70 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 136 | 29.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 196 | 29.95 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 218 | 30.03 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 228 | 30.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 18 |
| 229 | 30.04 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 320 | 30.24 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 341 | 30.29 | temperature | 20 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 375 | 30.36 | temperature | 20 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 387 | 30.38 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 16 |
| 395 | 30.41 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 430 | 30.46 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 17 |
| 444 | 30.47 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 457 | 30.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 21 |
| 469 | 30.52 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 6 |
| 537 | 30.60 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 550 | 30.61 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 585 | 30.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 23 |
| 586 | 30.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 618 | 30.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 626 | 30.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 633 | 30.68 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 638 | 30.68 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 640 | 30.69 | temperature | 20 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 649 | 30.69 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 699 | 30.72 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 732 | 30.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 20 |
| 736 | 30.77 | temperature | 20 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 737 | 30.77 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 784 | 30.80 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 796 | 30.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 817 | 30.81 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 832 | 30.83 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 897 | 30.87 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 16 |
| 918 | 30.88 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |