BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0321700 Os10g0321700|AK072673
(317 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0321700 Similar to Ribonucleoprotein like protein 223 1e-58
Os12g0502200 Similar to Low temperature-responsive RNA-bind... 154 1e-37
Os07g0602600 Similar to RNA binding protein 148 5e-36
Os01g0916600 RNA-binding region RNP-1 (RNA recognition moti... 110 9e-25
Os03g0670700 Similar to Glycine-rich RNA-binding, abscisic ... 90 2e-18
Os12g0632000 Similar to Glycine-rich RNA-binding protein 1 ... 90 2e-18
AK111046 90 3e-18
Os01g0974600 Similar to RNA-binding glycine rich protein (R... 89 6e-18
Os08g0139000 Similar to RNA-binding glycine rich protein (R... 88 1e-17
Os07g0631900 RNA-binding region RNP-1 (RNA recognition moti... 87 2e-17
Os03g0376600 Similar to 29 kDa ribonucleoprotein, chloropla... 86 4e-17
Os07g0549800 Similar to RGP-3 (Fragment) 83 3e-16
Os03g0278800 RNA-binding region RNP-1 (RNA recognition moti... 81 1e-15
Os09g0565200 Similar to Nucleic acid-binding protein precursor 80 2e-15
Os07g0187300 RNA-binding region RNP-1 (RNA recognition moti... 79 4e-15
Os03g0836200 Similar to RNA-binding protein RZ-1 79 6e-15
Os08g0557100 Similar to Nucleic acid-binding protein precursor 76 3e-14
Os02g0815200 Similar to 29 kDa ribonucleoprotein, chloropla... 74 1e-13
Os07g0584500 RNA-binding region RNP-1 (RNA recognition moti... 73 2e-13
AK063637 73 3e-13
Os05g0223500 73 3e-13
Os07g0158300 Similar to RNA binding protein 70 2e-12
Os02g0730800 RNA-binding region RNP-1 (RNA recognition moti... 70 3e-12
Os01g0367300 RNA-binding region RNP-1 (RNA recognition moti... 69 3e-12
Os03g0681900 Similar to RGP-3 (Fragment) 69 3e-12
Os11g0637700 RNA-binding region RNP-1 (RNA recognition moti... 69 4e-12
AK120313 68 9e-12
Os10g0470900 RNA-binding region RNP-1 (RNA recognition moti... 68 1e-11
Os05g0223300 Similar to RNA-binding protein 67 1e-11
Os02g0221500 Paraneoplastic encephalomyelitis antigen famil... 67 2e-11
Os06g0566100 RNA-binding region RNP-1 (RNA recognition moti... 67 2e-11
>Os10g0321700 Similar to Ribonucleoprotein like protein
Length = 317
Score = 223 bits (569), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MAFLRKVGNLVRQSAGSGSPLFQAVRCMSSSKLFIGGISYGTDDQSLKEAFANYGEVIEA 60
MAFLRKVGNLVRQSAGSGSPLFQAVRCMSSSKLFIGGISYGTDDQSLKEAFANYGEVIEA
Sbjct: 1 MAFLRKVGNLVRQSAGSGSPLFQAVRCMSSSKLFIGGISYGTDDQSLKEAFANYGEVIEA 60
Query: 61 RVIVDRTTGRSRGFGFVTYTSTDEAAAAITGMDGKDLQGRIVRVSYAHD 109
RVIVDRTTGRSRGFGFVTYTSTDEAAAAITGMDGKDLQGRIVRVSYAHD
Sbjct: 61 RVIVDRTTGRSRGFGFVTYTSTDEAAAAITGMDGKDLQGRIVRVSYAHD 109
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 66/105 (62%)
Query: 213 NSAPGNYSSDNFNQXXXXXXXXXXXXXXXXXXXXXXXTSDDSTGKLDELLNDLKVXXXXX 272
NSAPGNYSSDNFNQ TSDDSTGKLDELLNDLKV
Sbjct: 213 NSAPGNYSSDNFNQGGAAPGAYEGANYGGGNNYMNNATSDDSTGKLDELLNDLKVDGDGK 272
Query: 273 XXXXXXXXXXXLVNEDLKGDDGQDELLQNDFKDEDVSDDYANKRR 317
LVNEDLKGDDGQDELLQNDFKDEDVSDDYANKRR
Sbjct: 273 EDGEGKADGAGLVNEDLKGDDGQDELLQNDFKDEDVSDDYANKRR 317
>Os12g0502200 Similar to Low temperature-responsive RNA-binding protein
Length = 258
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 68/109 (62%), Positives = 93/109 (85%)
Query: 1 MAFLRKVGNLVRQSAGSGSPLFQAVRCMSSSKLFIGGISYGTDDQSLKEAFANYGEVIEA 60
MA K+GNL++++ S L+Q++RCMSSSKLF+GG+SYGTD+QSL++ FANYG+VIEA
Sbjct: 1 MALANKIGNLLKRATSSSPALYQSIRCMSSSKLFVGGLSYGTDEQSLRDTFANYGQVIEA 60
Query: 61 RVIVDRTTGRSRGFGFVTYTSTDEAAAAITGMDGKDLQGRIVRVSYAHD 109
++I DR TGRSRGFGF+TY S++EA+AAIT +DGKDL GR +RV+ A++
Sbjct: 61 KIINDRETGRSRGFGFITYASSEEASAAITALDGKDLDGRNIRVNTANE 109
>Os07g0602600 Similar to RNA binding protein
Length = 238
Score = 148 bits (374), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 71/110 (64%), Positives = 95/110 (86%), Gaps = 2/110 (1%)
Query: 1 MAFLRKVGNLVRQSAGSGSP-LFQAVRCMSSSKLFIGGISYGTDDQSLKEAFANYGEVIE 59
MAF +V N +R+++ S +P L QAVRCMSS KLF+GG+SY TDD +LK+ F++YG+V+E
Sbjct: 1 MAFAGRVVNALRRTSVSSNPSLLQAVRCMSS-KLFVGGLSYATDDTTLKDVFSHYGDVLE 59
Query: 60 ARVIVDRTTGRSRGFGFVTYTSTDEAAAAITGMDGKDLQGRIVRVSYAHD 109
AR+I+DR TG+S+G+GF+TYTS++EAAAA+T MDGKDLQGRIVRVS A+D
Sbjct: 60 ARIIIDRDTGKSKGYGFITYTSSEEAAAAVTAMDGKDLQGRIVRVSTAND 109
>Os01g0916600 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 150
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 84/116 (72%), Gaps = 8/116 (6%)
Query: 1 MAFLRKVGNLVRQSA-------GSGSPLFQAVRCMSSSKLFIGGISYGTDDQSLKEAFAN 53
MA K+G+ +R S GS +F A R MS+ KLF+GG+S+ T+D SLKEAF +
Sbjct: 1 MAAFNKLGSFLRHSGLTSSASAGSSPAMFNAARLMST-KLFVGGLSWNTNDDSLKEAFTS 59
Query: 54 YGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITGMDGKDLQGRIVRVSYAHD 109
+G+V EARVI DR +GRSRGFGFV++ + D+A +A+ MDGK+L+GR +RV++A++
Sbjct: 60 FGDVTEARVINDRESGRSRGFGFVSFANGDDAKSAMDAMDGKELEGRSIRVNFANE 115
>Os03g0670700 Similar to Glycine-rich RNA-binding, abscisic acid-inducible
protein
Length = 196
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 59/77 (76%)
Query: 32 KLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITG 91
+ F+GG+++ TDD+SL+ AF+ YGE++++++I DR TGRSRGFGFVT++S AI G
Sbjct: 9 RCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRDAIEG 68
Query: 92 MDGKDLQGRIVRVSYAH 108
M+GK+L GR + V+ A
Sbjct: 69 MNGKELDGRNITVNEAQ 85
>Os12g0632000 Similar to Glycine-rich RNA-binding protein 1 (Fragment)
Length = 162
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 59/77 (76%)
Query: 32 KLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITG 91
+ F+GG+++ TDD+SL+ AF+ +GE++E+++I DR TGRSRGFGFVT++S AI G
Sbjct: 9 RCFVGGLAWATDDRSLEAAFSTFGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEG 68
Query: 92 MDGKDLQGRIVRVSYAH 108
M+GK+L GR + V+ A
Sbjct: 69 MNGKELDGRNITVNEAQ 85
>AK111046
Length = 231
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 59/76 (77%)
Query: 32 KLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITG 91
+ F+GG+++ TDD+SL+ AF+ YGE++++++I DR TGRSRGFGFVT++S AI G
Sbjct: 9 RCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRDAIEG 68
Query: 92 MDGKDLQGRIVRVSYA 107
M+GK+L GR + V+ A
Sbjct: 69 MNGKELDGRNITVNEA 84
>Os01g0974600 Similar to RNA-binding glycine rich protein (RGP-2)
Length = 116
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 57/76 (75%)
Query: 32 KLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITG 91
KLFIGG+SY T++ +LK+AF+ +G +I+ +VI TG+S+G+GFV + S DEAAAA+
Sbjct: 38 KLFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHK 97
Query: 92 MDGKDLQGRIVRVSYA 107
M G+ + GR +RV YA
Sbjct: 98 MGGEVIDGRNIRVHYA 113
>Os08g0139000 Similar to RNA-binding glycine rich protein (RGP-2)
Length = 141
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 52/81 (64%)
Query: 29 SSSKLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAA 88
S LFI G+S T LKEAFA +GEVI ARV+ DR TG S+GFGFV Y + ++AA
Sbjct: 34 PSPNLFISGLSKRTTTDGLKEAFAKFGEVIHARVVTDRVTGFSKGFGFVRYATVEDAAKG 93
Query: 89 ITGMDGKDLQGRIVRVSYAHD 109
I GMDGK L G ++ YA
Sbjct: 94 IEGMDGKFLDGWVIFAEYARP 114
>Os07g0631900 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 264
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 59/80 (73%)
Query: 29 SSSKLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAA 88
SS+KL++G +++G D+ +L+ F+ G V++A+VI DR +GRSRGFGFVTY S +E A
Sbjct: 178 SSNKLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNA 237
Query: 89 ITGMDGKDLQGRIVRVSYAH 108
I+ +DG DL GR +RV+ A
Sbjct: 238 ISNLDGVDLDGRQIRVTVAE 257
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%)
Query: 32 KLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITG 91
K+F+G + + D L F G V V+ DR TGRSRGFGFVT ++ +EA AA+
Sbjct: 81 KVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQ 140
Query: 92 MDGKDLQGRIVRV 104
+G QGR +RV
Sbjct: 141 FNGYTFQGRPLRV 153
>Os03g0376600 Similar to 29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29)
Length = 265
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 58/79 (73%)
Query: 30 SSKLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAI 89
++++++G +S+G D+ +L F+ GEV+EA+VI DR +GRSRGFGFVTY S +E A+
Sbjct: 179 ANRVYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAV 238
Query: 90 TGMDGKDLQGRIVRVSYAH 108
+ +DG D+ GR +RV+ A
Sbjct: 239 SNLDGADMDGRQIRVTVAE 257
>Os07g0549800 Similar to RGP-3 (Fragment)
Length = 133
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 51/77 (66%)
Query: 33 LFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITGM 92
LF+ G++ T L+EAF+ +G+VIEARVI DR +G SRGFGFV Y + +EA I GM
Sbjct: 37 LFVSGLNKRTTSDGLREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIKGM 96
Query: 93 DGKDLQGRIVRVSYAHD 109
DGK L G ++ YA
Sbjct: 97 DGKFLDGWVIFAEYAKQ 113
>Os03g0278800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 173
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 56/85 (65%)
Query: 25 VRCMSSSKLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDE 84
V +++ KLFI G+S T D+ LK AFA +G+++EA+VI DR +GRS+GFGFV Y + +E
Sbjct: 61 VPPLTAPKLFISGLSRLTTDEKLKNAFAPFGQLLEAKVITDRISGRSKGFGFVRYATLEE 120
Query: 85 AAAAITGMDGKDLQGRIVRVSYAHD 109
A A M+ K L G ++ V A
Sbjct: 121 AENARQEMNAKFLDGWVIFVDPAKP 145
>Os09g0565200 Similar to Nucleic acid-binding protein precursor
Length = 322
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
Query: 11 VRQSAGSGSPLFQAVRCMSSS-KLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTG 69
V ++A G+ + + R S ++++G + + DD L + F+ +G+V++ARV+ DR TG
Sbjct: 216 VNKAAPRGARVERPPRQFGPSFRIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETG 275
Query: 70 RSRGFGFVTYTSTDEAAAAITGMDGKDLQGRIVRVSYAHD 109
RSRGFGFVT + +E AI +DG+ L GR +RV+ A +
Sbjct: 276 RSRGFGFVTMATQEELDDAIAALDGQSLDGRALRVNVAEE 315
>Os07g0187300 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 308
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 56/77 (72%)
Query: 32 KLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITG 91
++F+GG+S+ T +++L+ AF+ YG+VIE +V+++R TGRSRGFGFVT++ AAI G
Sbjct: 8 RIFVGGLSWDTTERTLERAFSEYGKVIETQVVLERDTGRSRGFGFVTFSEPRAVDAAIRG 67
Query: 92 MDGKDLQGRIVRVSYAH 108
M +L GR + V+ A
Sbjct: 68 MHNGELDGRTISVNKAQ 84
>Os03g0836200 Similar to RNA-binding protein RZ-1
Length = 205
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 51/77 (66%)
Query: 32 KLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITG 91
+ FIG +S+ T D+SLK+AF +G + EA+V+ D+ +GRSRGFGFVT+ AI G
Sbjct: 8 RCFIGNLSWSTTDESLKDAFGKFGNLTEAKVVFDKYSGRSRGFGFVTFDEKKAMEDAIEG 67
Query: 92 MDGKDLQGRIVRVSYAH 108
M+G DL GR + V A
Sbjct: 68 MNGLDLDGRAITVDKAQ 84
>Os08g0557100 Similar to Nucleic acid-binding protein precursor
Length = 194
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
Query: 11 VRQSAGSGSPLFQAVRCMSSS-KLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTG 69
V ++A GS + + R + + + ++G + + DD L + F+ +GEV+ A V+ DR +G
Sbjct: 89 VNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESG 148
Query: 70 RSRGFGFVTYTSTDEAAAAITGMDGKDLQGRIVRVSYAHD 109
RSRGFGFV+ S +E AI+ +DG++L GR +RV+ A +
Sbjct: 149 RSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAE 188
>Os02g0815200 Similar to 29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29)
Length = 316
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 52/79 (65%)
Query: 29 SSSKLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAA 88
+ KLF+G +S+ + L E F G V+ ARV+ D TGRSRG+GFV Y++ +E A
Sbjct: 234 TEHKLFVGNLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEA 293
Query: 89 ITGMDGKDLQGRIVRVSYA 107
++ ++G +L+GR +RV+ A
Sbjct: 294 LSSLNGTELEGREIRVNLA 312
>Os07g0584500 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 472
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 30 SSKLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAI 89
S KLF+GGIS+ TD+ L+E F+ +GEV EA ++ DR TGR+RGFGFV + TD A
Sbjct: 5 SGKLFVGGISWETDEDRLREYFSRFGEVTEAVIMRDRNTGRARGFGFVVF--TDAGVAER 62
Query: 90 TGMDGKDLQGRIVRVSYA 107
MD + GR+V A
Sbjct: 63 VTMDKHMIDGRMVEAKKA 80
>AK063637
Length = 122
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 44/50 (88%)
Query: 32 KLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTS 81
+ F+GG+++ TDD+SL+ AF+ YGE++++++I DR TGRSRGFGFVT++S
Sbjct: 9 RCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSS 58
>Os05g0223500
Length = 102
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 32 KLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITG 91
++++G + + +D+SLK++FANYG I A + D GRSRGFGFV + ++ AAI G
Sbjct: 19 RVYVGNLPFSANDRSLKDSFANYG-AISAEIAWDSVMGRSRGFGFVNFEDSESVNAAIQG 77
Query: 92 MDGKDLQGRIVRVSYAH 108
M+G+D+ GR V V+ A+
Sbjct: 78 MNGQDIGGRNVTVAQAN 94
>Os07g0158300 Similar to RNA binding protein
Length = 364
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 53/76 (69%)
Query: 32 KLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITG 91
K++ G + +G +L+ AF +++ARVI +R +GRSRGFGFV++ + ++A AA+
Sbjct: 237 KIYAGNLGWGVRADALRAAFEGQPGLLDARVIFERDSGRSRGFGFVSFRTAEDAQAALEA 296
Query: 92 MDGKDLQGRIVRVSYA 107
+DG +L+GR +R+S A
Sbjct: 297 LDGVELEGRPLRLSMA 312
>Os02g0730800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 399
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 55/80 (68%)
Query: 28 MSSSKLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAA 87
+ + +LF+ G+S+ T +++L+ AF +GE++E ++I+D+ + RS+G+ F+ YT+ + A
Sbjct: 292 VKTKRLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGA 351
Query: 88 AITGMDGKDLQGRIVRVSYA 107
A+ M+G+ + G ++ V A
Sbjct: 352 ALKAMNGQIINGWMIVVDVA 371
>Os01g0367300 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 698
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (63%)
Query: 33 LFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITGM 92
LF+ G SY T ++ L++ F+ YG V ARV+ D+ +G SRGFGF++ ++A AAI
Sbjct: 619 LFVAGFSYATTERDLEKKFSKYGRVTSARVVRDKRSGDSRGFGFLSLEKDEDADAAIRAC 678
Query: 93 DGKDLQGRIVRV 104
D + GRI+ V
Sbjct: 679 DETEWNGRIILV 690
>Os03g0681900 Similar to RGP-3 (Fragment)
Length = 308
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 55/76 (72%)
Query: 32 KLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITG 91
++F+GG+S+ TD++ L +AF +G+V++A+++++R T R RGFGFVT++ + +AI
Sbjct: 8 RIFVGGLSFHTDERKLADAFRRFGKVVDAQIMLERHTQRHRGFGFVTFSDPEAVDSAIKE 67
Query: 92 MDGKDLQGRIVRVSYA 107
M ++L GR + V+ A
Sbjct: 68 MHCQELDGRTISVNKA 83
>Os11g0637700 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 467
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 30 SSKLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAI 89
+ KLFIGGIS+ T++ L+E F YGEV+EA ++ DR TGR+RGFGF+ + D A A
Sbjct: 5 AGKLFIGGISWDTNEDRLREYFDKYGEVVEAVIMRDRATGRARGFGFIVF--ADPAVAER 62
Query: 90 TGMDGKDLQGRIVRVSYA 107
M+ + GR+V A
Sbjct: 63 VIMEKHMIDGRMVEAKKA 80
>AK120313
Length = 409
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 32 KLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITG 91
K+F+GG+ + L+E F+ YG+++E ++++D +TGRSRGFGFVT+ S D I+
Sbjct: 168 KIFVGGLPSSLTEDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISE 227
Query: 92 MDGKDLQGRIVRVSYA 107
+DL G+ V + A
Sbjct: 228 GRMRDLGGKQVEIKKA 243
>Os10g0470900 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 464
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 32 KLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITG 91
KLFIGGIS+ T ++ L++ FA YG+V +A V+ D+ TGR RGFGFV ++ AA+
Sbjct: 7 KLFIGGISWETTEEKLRDHFAAYGDVSQAAVMRDKLTGRPRGFGFVVFSDPSSVDAAL-- 64
Query: 92 MDGKDLQGRIVRVSYA 107
+D L GR V V A
Sbjct: 65 VDPHTLDGRTVDVKRA 80
>Os05g0223300 Similar to RNA-binding protein
Length = 102
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 32 KLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITG 91
++++G + Y D+Q+L + FA+YG I A + D GR RGFGFV + + AAI G
Sbjct: 19 RVYVGNLPYSVDEQTLMDYFADYG-AISAEIAWDSEMGRPRGFGFVNFEDNESVNAAIHG 77
Query: 92 MDGKDLQGRIVRVSYAH 108
M+G+D+ GR V V+ A
Sbjct: 78 MNGQDIGGRKVTVARAQ 94
>Os02g0221500 Paraneoplastic encephalomyelitis antigen family protein
Length = 397
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 32 KLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITG 91
K+F+GG+ + L+E F+ YG+++E ++++D +TGRSRGFGFVT+ S D I+
Sbjct: 156 KIFVGGLPSSLTEDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISE 215
Query: 92 MDGKDLQGRIVRVSYA 107
+DL G+ V + A
Sbjct: 216 GRMRDLGGKQVEIKKA 231
>Os06g0566100 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 285
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%)
Query: 32 KLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITG 91
K+F+GGI + LKE F++YG+V+E ++++D TGRSRGFGFVT+ + D ++
Sbjct: 59 KIFVGGIPPSLTEDKLKEHFSSYGKVVEHQIMLDHGTGRSRGFGFVTFENEDAVERVMSE 118
Query: 92 MDGKDLQGRIVRVSYA 107
DL G+ V + A
Sbjct: 119 GRMHDLAGKQVEIKKA 134
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.133 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,084,388
Number of extensions: 194226
Number of successful extensions: 717
Number of sequences better than 1.0e-10: 32
Number of HSP's gapped: 727
Number of HSP's successfully gapped: 35
Length of query: 317
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 216
Effective length of database: 11,762,187
Effective search space: 2540632392
Effective search space used: 2540632392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)