Os01g0974600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RNA-binding glycine rich protein (RGP-2).
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Os01g0974600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RNA-binding glycine rich protein (RGP-2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 103.21 | 0.477 | 5.88 | -2.62 | 0.39 | -5.62 | -0.00744 | -9.59 | -0.44 | 13.3 | 20.1 | 5365 | -- | -- |
| 119.94 | 0.51 | 6.15 | -2.73 | 0.266 | -1.92 | 0.209 | -- | -0.607 | 16.1 | 23.05 | 3263 | -- | -- |
| 103.18 | 0.473 | 5.88 | -2.61 | 0.385 | -5.73 | -- | -9.79 | -0.435 | 13.2 | 20 | 5359 | -- | -- |
| 112.6 | 0.494 | 6.14 | -2.49 | 0.395 | -1.7 | -- | -- | -0.572 | 13.6 | 25.4 | 2939 | -- | -- |
| 110.42 | 0.489 | 5.84 | -2.78 | -- | -6.69 | -- | -11.9 | -0.444 | -- | 19.85 | 6247 | -- | -- |
| 159.86 | 0.593 | 6.04 | -1.76 | 0.325 | -- | -0.0261 | -- | -0.136 | 13.2 | -- | -- | -- | -- |
| 159.86 | 0.592 | 6.04 | -1.76 | 0.325 | -- | -- | -- | -0.136 | 13.2 | -- | -- | -- | -- |
| 121.15 | 0.513 | 6.14 | -2.52 | -- | -1.67 | -- | -- | -0.571 | -- | 25.3 | 3130 | -- | -- |
| 233.6 | 0.716 | 6.02 | -- | 0.129 | -0.88 | -- | -- | -0.0447 | 11.5 | 38.94 | 30 | -- | -- |
| 166.41 | 0.603 | 6.04 | -1.78 | -- | -- | -- | -- | -0.143 | -- | -- | -- | -- | -- |
| 241.82 | 0.727 | 6 | -- | 0.355 | -- | -- | -- | 0.06 | 13.3 | -- | -- | -- | -- |
| 234.39 | 0.715 | 6.03 | -- | -- | -1.01 | -- | -- | -0.0587 | -- | 62.26 | 2 | -- | -- |
| 249.6 | 0.737 | 6 | -- | -- | -- | -- | -- | 0.0541 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.44 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 14 | 8 |
| 3 | 101.51 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 9 | 101.59 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 13 | 101.64 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 12 | 12 |
| 14 | 101.64 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 11 | 13 |
| 25 | 101.76 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 40 | 101.93 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 44 | 101.96 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 18 | 6 |
| 76 | 102.14 | atmosphere | 1015.0 | 14400 | > th | dose dependent | sin | 17 | NA |
| 138 | 102.54 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 151 | 102.63 | atmosphere | 1015.0 | 14400 | < th | dose independent | sin | 18 | NA |
| 158 | 102.67 | atmosphere | 1015.0 | 14400 | > th | dose independent | sin | 18 | NA |
| 167 | 102.73 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 252 | 103.22 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 265 | 103.25 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 11 | 7 |
| 272 | 103.28 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 274 | 103.28 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 286 | 103.36 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 306 | 103.47 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 10 | 4 |
| 308 | 103.48 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 11 | 4 |
| 311 | 103.48 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 9 | 10 |
| 322 | 103.50 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 11 | 4 |
| 326 | 103.50 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 3 |
| 342 | 103.52 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 343 | 103.52 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 429 | 103.77 | wind | 1.0 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 450 | 103.84 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 472 | 103.90 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 563 | 104.11 | atmosphere | 1015.0 | 14400 | > th | dose dependent | no | NA | NA |
| 606 | 104.22 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 17 | 23 |
| 630 | 104.27 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 711 | 104.49 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 758 | 104.63 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 789 | 104.70 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 849 | 104.83 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 857 | 104.85 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 905 | 104.98 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 927 | 105.03 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 932 | 105.05 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 6 |