BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0974600 Os01g0974600|J053024D16
(116 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0974600 Similar to RNA-binding glycine rich protein (R... 204 1e-53
Os12g0502200 Similar to Low temperature-responsive RNA-bind... 93 3e-20
Os07g0602600 Similar to RNA binding protein 89 8e-19
Os10g0321700 Similar to Ribonucleoprotein like protein 88 2e-18
Os01g0916600 RNA-binding region RNP-1 (RNA recognition moti... 88 2e-18
Os03g0670700 Similar to Glycine-rich RNA-binding, abscisic ... 76 5e-15
Os12g0632000 Similar to Glycine-rich RNA-binding protein 1 ... 76 6e-15
AK111046 75 9e-15
Os07g0187300 RNA-binding region RNP-1 (RNA recognition moti... 71 2e-13
Os08g0139000 Similar to RNA-binding glycine rich protein (R... 69 6e-13
Os03g0278800 RNA-binding region RNP-1 (RNA recognition moti... 69 8e-13
Os02g0730800 RNA-binding region RNP-1 (RNA recognition moti... 68 2e-12
Os07g0549800 Similar to RGP-3 (Fragment) 67 2e-12
Os09g0565200 Similar to Nucleic acid-binding protein precursor 67 4e-12
Os07g0631900 RNA-binding region RNP-1 (RNA recognition moti... 67 4e-12
Os03g0376600 Similar to 29 kDa ribonucleoprotein, chloropla... 66 5e-12
Os02g0815200 Similar to 29 kDa ribonucleoprotein, chloropla... 65 1e-11
Os05g0223500 64 2e-11
Os03g0245900 64 3e-11
Os09g0565150 63 4e-11
>Os01g0974600 Similar to RNA-binding glycine rich protein (RGP-2)
Length = 116
Score = 204 bits (518), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 101/116 (87%), Positives = 101/116 (87%)
Query: 1 MLNRRPKLVPYAATPFGILSHPXXXXXXXXXXXXXXXKLFIGGLSYDTNETALKDAFSQH 60
MLNRRPKLVPYAATPFGILSHP KLFIGGLSYDTNETALKDAFSQH
Sbjct: 1 MLNRRPKLVPYAATPFGILSHPSSTARARASSSSCRSKLFIGGLSYDTNETALKDAFSQH 60
Query: 61 GHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHKMGGEVIDGRNIRVHYANSG 116
GHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHKMGGEVIDGRNIRVHYANSG
Sbjct: 61 GHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHKMGGEVIDGRNIRVHYANSG 116
>Os12g0502200 Similar to Low temperature-responsive RNA-binding protein
Length = 258
Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 60/77 (77%)
Query: 38 KLFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHK 97
KLF+GGLSY T+E +L+D F+ +G +I+ K+I TG+S+G+GF+ +AS +EA+AA+
Sbjct: 32 KLFVGGLSYGTDEQSLRDTFANYGQVIEAKIINDRETGRSRGFGFITYASSEEASAAITA 91
Query: 98 MGGEVIDGRNIRVHYAN 114
+ G+ +DGRNIRV+ AN
Sbjct: 92 LDGKDLDGRNIRVNTAN 108
>Os07g0602600 Similar to RNA binding protein
Length = 238
Score = 89.0 bits (219), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 56/77 (72%)
Query: 38 KLFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHK 97
KLF+GGLSY T++T LKD FS +G +++ ++I TGKSKGYGF+ + S +EAAAA+
Sbjct: 32 KLFVGGLSYATDDTTLKDVFSHYGDVLEARIIIDRDTGKSKGYGFITYTSSEEAAAAVTA 91
Query: 98 MGGEVIDGRNIRVHYAN 114
M G+ + GR +RV AN
Sbjct: 92 MDGKDLQGRIVRVSTAN 108
>Os10g0321700 Similar to Ribonucleoprotein like protein
Length = 317
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 57/76 (75%)
Query: 38 KLFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHK 97
KLFIGG+SY T++ +LK+AF+ +G +I+ +VI TG+S+G+GFV + S DEAAAA+
Sbjct: 32 KLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITG 91
Query: 98 MGGEVIDGRNIRVHYA 113
M G+ + GR +RV YA
Sbjct: 92 MDGKDLQGRIVRVSYA 107
>Os01g0916600 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 150
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 60/77 (77%)
Query: 38 KLFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHK 97
KLF+GGLS++TN+ +LK+AF+ G + + +VI +G+S+G+GFV FA+ D+A +A+
Sbjct: 38 KLFVGGLSWNTNDDSLKEAFTSFGDVTEARVINDRESGRSRGFGFVSFANGDDAKSAMDA 97
Query: 98 MGGEVIDGRNIRVHYAN 114
M G+ ++GR+IRV++AN
Sbjct: 98 MDGKELEGRSIRVNFAN 114
>Os03g0670700 Similar to Glycine-rich RNA-binding, abscisic acid-inducible
protein
Length = 196
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 53/78 (67%)
Query: 38 KLFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHK 97
+ F+GGL++ T++ +L+ AFS +G I+ K+I TG+S+G+GFV F+SE A+
Sbjct: 9 RCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRDAIEG 68
Query: 98 MGGEVIDGRNIRVHYANS 115
M G+ +DGRNI V+ A S
Sbjct: 69 MNGKELDGRNITVNEAQS 86
>Os12g0632000 Similar to Glycine-rich RNA-binding protein 1 (Fragment)
Length = 162
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 53/78 (67%)
Query: 38 KLFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHK 97
+ F+GGL++ T++ +L+ AFS G I++ K+I TG+S+G+GFV F+SE A+
Sbjct: 9 RCFVGGLAWATDDRSLEAAFSTFGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEG 68
Query: 98 MGGEVIDGRNIRVHYANS 115
M G+ +DGRNI V+ A S
Sbjct: 69 MNGKELDGRNITVNEAQS 86
>AK111046
Length = 231
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 53/78 (67%)
Query: 38 KLFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHK 97
+ F+GGL++ T++ +L+ AFS +G I+ K+I TG+S+G+GFV F+SE A+
Sbjct: 9 RCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRDAIEG 68
Query: 98 MGGEVIDGRNIRVHYANS 115
M G+ +DGRNI V+ A S
Sbjct: 69 MNGKELDGRNITVNEAQS 86
>Os07g0187300 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 308
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 50/77 (64%)
Query: 38 KLFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHK 97
++F+GGLS+DT E L+ AFS++G +I+ +V+ TG+S+G+GFV F+ AA+
Sbjct: 8 RIFVGGLSWDTTERTLERAFSEYGKVIETQVVLERDTGRSRGFGFVTFSEPRAVDAAIRG 67
Query: 98 MGGEVIDGRNIRVHYAN 114
M +DGR I V+ A
Sbjct: 68 MHNGELDGRTISVNKAQ 84
>Os08g0139000 Similar to RNA-binding glycine rich protein (RGP-2)
Length = 141
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%)
Query: 39 LFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHKM 98
LFI GLS T LK+AF++ G +I +V+ VTG SKG+GFV++A+ ++AA + M
Sbjct: 38 LFISGLSKRTTTDGLKEAFAKFGEVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEGM 97
Query: 99 GGEVIDGRNIRVHYAN 114
G+ +DG I YA
Sbjct: 98 DGKFLDGWVIFAEYAR 113
>Os03g0278800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 173
Score = 68.9 bits (167), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%)
Query: 38 KLFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHK 97
KLFI GLS T + LK+AF+ G +++ KVI ++G+SKG+GFV++A+ +EA A +
Sbjct: 68 KLFISGLSRLTTDEKLKNAFAPFGQLLEAKVITDRISGRSKGFGFVRYATLEEAENARQE 127
Query: 98 MGGEVIDGRNIRVHYA 113
M + +DG I V A
Sbjct: 128 MNAKFLDGWVIFVDPA 143
>Os02g0730800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 399
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 50/76 (65%)
Query: 38 KLFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHK 97
+LF+ GLS+ T+E L+ AF G +++VK+I ++ +SKGY F+++ +E+ AAL
Sbjct: 296 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKA 355
Query: 98 MGGEVIDGRNIRVHYA 113
M G++I+G I V A
Sbjct: 356 MNGQIINGWMIVVDVA 371
>Os07g0549800 Similar to RGP-3 (Fragment)
Length = 133
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 39 LFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHKM 98
LF+ GL+ T L++AFS+ G +I+ +VI ++G S+G+GFVK+A+ +EA + M
Sbjct: 37 LFVSGLNKRTTSDGLREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIKGM 96
Query: 99 GGEVIDGRNIRVHYA 113
G+ +DG I YA
Sbjct: 97 DGKFLDGWVIFAEYA 111
>Os09g0565200 Similar to Nucleic acid-binding protein precursor
Length = 322
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 50/77 (64%)
Query: 38 KLFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHK 97
++++G L + +++ L FS+HG ++ +V+ TG+S+G+GFV A+++E A+
Sbjct: 238 RIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAA 297
Query: 98 MGGEVIDGRNIRVHYAN 114
+ G+ +DGR +RV+ A
Sbjct: 298 LDGQSLDGRALRVNVAE 314
>Os07g0631900 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 264
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 49/78 (62%)
Query: 38 KLFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHK 97
KL++G L++ + + L++ FS+ G ++ KVI +G+S+G+GFV + S +E A+
Sbjct: 181 KLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISN 240
Query: 98 MGGEVIDGRNIRVHYANS 115
+ G +DGR IRV A S
Sbjct: 241 LDGVDLDGRQIRVTVAES 258
>Os03g0376600 Similar to 29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29)
Length = 265
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%)
Query: 38 KLFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHK 97
++++G LS+ + AL + FS G +++ KVI +G+S+G+GFV + S +E A+
Sbjct: 181 RVYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSN 240
Query: 98 MGGEVIDGRNIRVHYANS 115
+ G +DGR IRV A S
Sbjct: 241 LDGADMDGRQIRVTVAES 258
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 47/74 (63%)
Query: 38 KLFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHK 97
++F+G L + + L F Q G + V+VI +TG+S+G+GFV +S +E AA+ +
Sbjct: 87 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQ 146
Query: 98 MGGEVIDGRNIRVH 111
G ++DGR++RV+
Sbjct: 147 FNGYILDGRSLRVN 160
>Os02g0815200 Similar to 29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29)
Length = 316
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 48/76 (63%)
Query: 38 KLFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHK 97
KLF+G LS+ L + F + G+++ +V+ TG+S+GYGFV +++++E AL
Sbjct: 237 KLFVGNLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSS 296
Query: 98 MGGEVIDGRNIRVHYA 113
+ G ++GR IRV+ A
Sbjct: 297 LNGTELEGREIRVNLA 312
>Os05g0223500
Length = 102
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 38 KLFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHK 97
++++G L + N+ +LKD+F+ +G I ++ V G+S+G+GFV F + AA+
Sbjct: 19 RVYVGNLPFSANDRSLKDSFANYG-AISAEIAWDSVMGRSRGFGFVNFEDSESVNAAIQG 77
Query: 98 MGGEVIDGRNIRVHYANS 115
M G+ I GRN+ V AN+
Sbjct: 78 MNGQDIGGRNVTVAQANT 95
>Os03g0245900
Length = 101
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 38 KLFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHK 97
KLF+GGL ++T A++ F Q G I++ VI TG+SKGYGFV F D AA AL
Sbjct: 9 KLFVGGLPWETRGDAVRRHFEQFGEIVEAVVIADKHTGRSKGYGFVTFRDPDGAARALQD 68
Query: 98 MGGEVIDGRNIRVHYANSG 116
VIDGR + A G
Sbjct: 69 P-TPVIDGRRANCNLAAFG 86
>Os09g0565150
Length = 611
Score = 63.2 bits (152), Expect = 4e-11, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 46/75 (61%)
Query: 39 LFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHKM 98
+++G L +D + L F +HG ++ +V+C TG+S+G+GFV A+ E + +
Sbjct: 529 IYVGNLRWDVDRLRLLKFFGEHGRVLVAQVVCDRQTGRSRGFGFVSMATLREPDDVIASL 588
Query: 99 GGEVIDGRNIRVHYA 113
G+++DGR +RV +A
Sbjct: 589 NGQIMDGRPMRVSFA 603
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.138 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,615,749
Number of extensions: 119412
Number of successful extensions: 525
Number of sequences better than 1.0e-10: 20
Number of HSP's gapped: 533
Number of HSP's successfully gapped: 21
Length of query: 116
Length of database: 17,035,801
Length adjustment: 83
Effective length of query: 33
Effective length of database: 12,702,039
Effective search space: 419167287
Effective search space used: 419167287
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)