Os08g0139000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RNA-binding glycine rich protein (RGP-2).
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Os08g0139000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RNA-binding glycine rich protein (RGP-2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.32 | 0.394 | 11.4 | 0.626 | 1.53 | 0.881 | 0.22 | -0.61 | 0.352 | 19.1 | 19.6 | 2888 | -- | -- |
| 70.76 | 0.392 | 11.4 | 0.691 | 1.53 | 1.04 | 0.207 | -- | 0.368 | 19.1 | 19.47 | 2903 | -- | -- |
| 70.45 | 0.391 | 11.4 | 0.618 | 1.53 | 0.882 | -- | -0.625 | 0.351 | 19.1 | 19.63 | 2888 | -- | -- |
| 70.9 | 0.392 | 11.4 | 0.696 | 1.53 | 1.04 | -- | -- | 0.373 | 19.1 | 19.45 | 2921 | -- | -- |
| 184.78 | 0.633 | 11.4 | 0.811 | -- | 0.835 | -- | -0.377 | 0.356 | -- | 20.77 | 628 | -- | -- |
| 88.46 | 0.441 | 11.3 | 1.24 | 1.51 | -- | 0.359 | -- | 0.603 | 19.1 | -- | -- | -- | -- |
| 88.8 | 0.441 | 11.3 | 1.23 | 1.51 | -- | -- | -- | 0.603 | 19.1 | -- | -- | -- | -- |
| 138.6 | 0.548 | 11.4 | 1.04 | -- | 1.06 | -- | -- | 0.434 | -- | 26.3 | 474 | -- | -- |
| 77.68 | 0.41 | 11.4 | -- | 1.5 | 1.37 | -- | -- | 0.268 | 19.1 | 18.3 | 11392 | -- | -- |
| 209.21 | 0.676 | 11.3 | 1.2 | -- | -- | -- | -- | 0.577 | -- | -- | -- | -- | -- |
| 128.69 | 0.531 | 11.4 | -- | 1.5 | -- | -- | -- | 0.466 | 19.2 | -- | -- | -- | -- |
| 155.91 | 0.582 | 11.4 | -- | -- | 1.22 | -- | -- | 0.188 | -- | 26.6 | 478 | -- | -- |
| 247.31 | 0.734 | 11.3 | -- | -- | -- | -- | -- | 0.443 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 3 | 69.87 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 5 |
| 30 | 70.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 52 | 70.86 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 17 |
| 78 | 71.17 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 84 | 71.19 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 86 | 71.20 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 94 | 71.24 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 11 |
| 106 | 71.29 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 120 | 71.34 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 11 |
| 132 | 71.38 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 175 | 71.52 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 178 | 71.52 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 19 |
| 201 | 71.61 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 205 | 71.62 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 240 | 71.74 | wind | 1 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 270 | 71.82 | temperature | 20 | 270 | > th | dose independent | rect. | 24 | 17 |
| 358 | 72.04 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 383 | 72.07 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 22 |
| 420 | 72.14 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 22 |
| 541 | 72.32 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 573 | 72.34 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 584 | 72.36 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 618 | 72.40 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 619 | 72.41 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 653 | 72.45 | temperature | 20 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 675 | 72.48 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 23 |
| 697 | 72.51 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 23 |
| 844 | 72.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 18 |
| 864 | 72.81 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 22 |
| 979 | 73.04 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 3 |