BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0139000 Os08g0139000|AK119802
(141 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0139000 Similar to RNA-binding glycine rich protein (R... 215 1e-56
Os07g0549800 Similar to RGP-3 (Fragment) 153 3e-38
Os03g0278800 RNA-binding region RNP-1 (RNA recognition moti... 107 4e-24
Os10g0321700 Similar to Ribonucleoprotein like protein 85 2e-17
Os01g0916600 RNA-binding region RNP-1 (RNA recognition moti... 82 2e-16
Os12g0502200 Similar to Low temperature-responsive RNA-bind... 77 3e-15
Os02g0730800 RNA-binding region RNP-1 (RNA recognition moti... 73 6e-14
Os07g0602600 Similar to RNA binding protein 72 2e-13
Os01g0974600 Similar to RNA-binding glycine rich protein (R... 69 1e-12
Os07g0623300 Similar to Splicing factor SC35 68 2e-12
Os03g0836200 Similar to RNA-binding protein RZ-1 68 2e-12
Os12g0632000 Similar to Glycine-rich RNA-binding protein 1 ... 66 8e-12
AK111046 65 1e-11
Os03g0388000 Similar to Splicing factor SC35 65 1e-11
Os03g0670700 Similar to Glycine-rich RNA-binding, abscisic ... 65 1e-11
Os08g0486200 Similar to Splicing factor SC35 64 3e-11
>Os08g0139000 Similar to RNA-binding glycine rich protein (RGP-2)
Length = 141
Score = 215 bits (547), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/124 (87%), Positives = 108/124 (87%)
Query: 1 MAAAATARSGFRRMFSISAFXXXXXXXXXXXXXXXXNLFISGLSKRTTTDGLKEAFAKFG 60
MAAAATARSGFRRMFSISAF NLFISGLSKRTTTDGLKEAFAKFG
Sbjct: 1 MAAAATARSGFRRMFSISAFSPPKPPTPPPKADPSPNLFISGLSKRTTTDGLKEAFAKFG 60
Query: 61 EVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEGMDGKFLDGWVIFAEYARPRTPPQQ 120
EVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEGMDGKFLDGWVIFAEYARPRTPPQQ
Sbjct: 61 EVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEGMDGKFLDGWVIFAEYARPRTPPQQ 120
Query: 121 PEMN 124
PEMN
Sbjct: 121 PEMN 124
>Os07g0549800 Similar to RGP-3 (Fragment)
Length = 133
Score = 153 bits (387), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 72/114 (63%), Positives = 89/114 (78%), Gaps = 2/114 (1%)
Query: 10 GFRRMFSISAFXXXXXXXXXXXXXXXXNLFISGLSKRTTTDGLKEAFAKFGEVIHARVVT 69
GFRRMFS+S F NLF+SGL+KRTT+DGL+EAF+KFG+VI ARV+T
Sbjct: 9 GFRRMFSVSGFTPPPPPAARPLADPCNNLFVSGLNKRTTSDGLREAFSKFGQVIEARVIT 68
Query: 70 DRVTGFSKGFGFVRYATVEDAAKGIEGMDGKFLDGWVIFAEYARPR--TPPQQP 121
DR++G+S+GFGFV+YATVE+A +GI+GMDGKFLDGWVIFAEYA+ R P QP
Sbjct: 69 DRISGYSRGFGFVKYATVEEAGEGIKGMDGKFLDGWVIFAEYAKQREAQQPAQP 122
>Os03g0278800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 173
Score = 107 bits (266), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 66/84 (78%), Gaps = 2/84 (2%)
Query: 38 LFISGLSKRTTTDGLKEAFAKFGEVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEGM 97
LFISGLS+ TT + LK AFA FG+++ A+V+TDR++G SKGFGFVRYAT+E+A + M
Sbjct: 69 LFISGLSRLTTDEKLKNAFAPFGQLLEAKVITDRISGRSKGFGFVRYATLEEAENARQEM 128
Query: 98 DGKFLDGWVIFAEYARPRTPPQQP 121
+ KFLDGWVIF + A+PR Q+P
Sbjct: 129 NAKFLDGWVIFVDPAKPRQ--QKP 150
>Os10g0321700 Similar to Ribonucleoprotein like protein
Length = 317
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 51/77 (66%)
Query: 38 LFISGLSKRTTTDGLKEAFAKFGEVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEGM 97
LFI G+S T LKEAFA +GEVI ARV+ DR TG S+GFGFV Y + ++AA I GM
Sbjct: 33 LFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITGM 92
Query: 98 DGKFLDGWVIFAEYARP 114
DGK L G ++ YA
Sbjct: 93 DGKDLQGRIVRVSYAHD 109
>Os01g0916600 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 150
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 51/80 (63%)
Query: 38 LFISGLSKRTTTDGLKEAFAKFGEVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEGM 97
LF+ GLS T D LKEAF FG+V ARV+ DR +G S+GFGFV +A +DA ++ M
Sbjct: 39 LFVGGLSWNTNDDSLKEAFTSFGDVTEARVINDRESGRSRGFGFVSFANGDDAKSAMDAM 98
Query: 98 DGKFLDGWVIFAEYARPRTP 117
DGK L+G I +A R P
Sbjct: 99 DGKELEGRSIRVNFANERPP 118
>Os12g0502200 Similar to Low temperature-responsive RNA-binding protein
Length = 258
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 51/79 (64%)
Query: 38 LFISGLSKRTTTDGLKEAFAKFGEVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEGM 97
LF+ GLS T L++ FA +G+VI A+++ DR TG S+GFGF+ YA+ E+A+ I +
Sbjct: 33 LFVGGLSYGTDEQSLRDTFANYGQVIEAKIINDRETGRSRGFGFITYASSEEASAAITAL 92
Query: 98 DGKFLDGWVIFAEYARPRT 116
DGK LDG I A RT
Sbjct: 93 DGKDLDGRNIRVNTANERT 111
>Os02g0730800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 399
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 54/84 (64%)
Query: 38 LFISGLSKRTTTDGLKEAFAKFGEVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEGM 97
LF++GLS T+ L+ AF FGE++ +++ D+++ SKG+ F+ Y T E ++ M
Sbjct: 297 LFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKAM 356
Query: 98 DGKFLDGWVIFAEYARPRTPPQQP 121
+G+ ++GW+I + A+ R+ +QP
Sbjct: 357 NGQIINGWMIVVDVAKHRSRDRQP 380
>Os07g0602600 Similar to RNA binding protein
Length = 238
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%)
Query: 38 LFISGLSKRTTTDGLKEAFAKFGEVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEGM 97
LF+ GLS T LK+ F+ +G+V+ AR++ DR TG SKG+GF+ Y + E+AA + M
Sbjct: 33 LFVGGLSYATDDTTLKDVFSHYGDVLEARIIIDRDTGKSKGYGFITYTSSEEAAAAVTAM 92
Query: 98 DGKFLDGWVI 107
DGK L G ++
Sbjct: 93 DGKDLQGRIV 102
>Os01g0974600 Similar to RNA-binding glycine rich protein (RGP-2)
Length = 116
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%)
Query: 38 LFISGLSKRTTTDGLKEAFAKFGEVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEGM 97
LFI GLS T LK+AF++ G +I +V+ VTG SKG+GFV++A+ ++AA + M
Sbjct: 39 LFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHKM 98
Query: 98 DGKFLDGWVIFAEYAR 113
G+ +DG I YA
Sbjct: 99 GGEVIDGRNIRVHYAN 114
>Os07g0623300 Similar to Splicing factor SC35
Length = 275
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%)
Query: 37 NLFISGLSKRTTTDGLKEAFAKFGEVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEG 96
+L + ++ RTT D L F K+GEV+ + DR TG S+GF FVRY ++A K ++
Sbjct: 17 SLLVLNITFRTTADDLSPLFEKYGEVVDIYIPRDRRTGDSRGFAFVRYKYEDEAQKAVDR 76
Query: 97 MDGKFLDGWVIFAEYAR 113
+DG+ +DG I ++A+
Sbjct: 77 LDGRVVDGREIMVQFAK 93
>Os03g0836200 Similar to RNA-binding protein RZ-1
Length = 205
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 49/80 (61%)
Query: 38 LFISGLSKRTTTDGLKEAFAKFGEVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEGM 97
FI LS TT + LK+AF KFG + A+VV D+ +G S+GFGFV + + IEGM
Sbjct: 9 CFIGNLSWSTTDESLKDAFGKFGNLTEAKVVFDKYSGRSRGFGFVTFDEKKAMEDAIEGM 68
Query: 98 DGKFLDGWVIFAEYARPRTP 117
+G LDG I + A+P+ P
Sbjct: 69 NGLDLDGRAITVDKAQPQGP 88
>Os12g0632000 Similar to Glycine-rich RNA-binding protein 1 (Fragment)
Length = 162
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%)
Query: 38 LFISGLSKRTTTDGLKEAFAKFGEVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEGM 97
F+ GL+ T L+ AF+ FGE++ ++++ DR TG S+GFGFV +++ + IEGM
Sbjct: 10 CFVGGLAWATDDRSLEAAFSTFGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGM 69
Query: 98 DGKFLDGWVIFAEYARPR 115
+GK LDG I A+ R
Sbjct: 70 NGKELDGRNITVNEAQSR 87
>AK111046
Length = 231
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 38 LFISGLSKRTTTDGLKEAFAKFGEVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEGM 97
F+ GL+ T L+ AF+ +GE++ ++++ DR TG S+GFGFV +++ + IEGM
Sbjct: 10 CFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRDAIEGM 69
Query: 98 DGKFLDGWVIFAEYARPR 115
+GK LDG I A+ R
Sbjct: 70 NGKELDGRNITVNEAQSR 87
>Os03g0388000 Similar to Splicing factor SC35
Length = 205
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 37 NLFISGLSKRTTTDGLKEAFAKFGEVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEG 96
+L + +S RTT D L F + GEV+ R+ DR TG S+GF FVRY ++A K ++
Sbjct: 17 SLLVLNVSFRTTADDLLALFDRCGEVLDIRIPRDRRTGDSRGFAFVRYKYEDEAQKAVDK 76
Query: 97 MDGKFLDGWVIFAEYAR 113
+DG+ +DG I ++A+
Sbjct: 77 LDGRTVDGRDIMVQFAK 93
>Os03g0670700 Similar to Glycine-rich RNA-binding, abscisic acid-inducible
protein
Length = 196
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 38 LFISGLSKRTTTDGLKEAFAKFGEVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEGM 97
F+ GL+ T L+ AF+ +GE++ ++++ DR TG S+GFGFV +++ + IEGM
Sbjct: 10 CFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRDAIEGM 69
Query: 98 DGKFLDGWVIFAEYARPR 115
+GK LDG I A+ R
Sbjct: 70 NGKELDGRNITVNEAQSR 87
>Os08g0486200 Similar to Splicing factor SC35
Length = 289
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 37 NLFISGLSKRTTTDGLKEAFAKFGEVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEG 96
+L + +S RTT D L F ++G+V+ + DR TG S+GF FVRY E+A K I+
Sbjct: 17 SLLVLNISFRTTADDLFPLFDRYGKVVDVFIPRDRRTGDSRGFAFVRYKYAEEAQKAIDR 76
Query: 97 MDGKFLDGWVIFAEYAR 113
+DG+ +DG I ++A+
Sbjct: 77 LDGRNVDGRNIMVQFAK 93
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,701,872
Number of extensions: 119913
Number of successful extensions: 514
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 532
Number of HSP's successfully gapped: 16
Length of query: 141
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 50
Effective length of database: 12,284,327
Effective search space: 614216350
Effective search space used: 614216350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 151 (62.8 bits)