Os07g0549800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RGP-3 (Fragment).
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Os07g0549800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RGP-3 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.82 | 0.414 | 12.4 | 1.48 | 0.978 | 1.04 | 0.296 | -0.753 | 0.396 | 16.9 | 21.6 | 6 | -- | -- |
| 78.17 | 0.415 | 12.4 | 1.61 | 0.982 | 1.01 | 0.144 | -- | 0.434 | 16.9 | 21.61 | 5 | -- | -- |
| 77.93 | 0.414 | 12.4 | 1.51 | 0.976 | 1.06 | -- | -0.587 | 0.403 | 16.9 | 21.6 | 6 | -- | -- |
| 78.22 | 0.415 | 12.4 | 1.61 | 0.981 | 1.02 | -- | -- | 0.434 | 16.9 | 21.67 | 5 | -- | -- |
| 109.82 | 0.488 | 12.5 | 1.18 | -- | 1.83 | -- | -2.03 | 0.274 | -- | 23.64 | 85 | -- | -- |
| 93.47 | 0.453 | 12.4 | 1.8 | 1.31 | -- | 0.449 | -- | 0.595 | 16.2 | -- | -- | -- | -- |
| 94.03 | 0.454 | 12.4 | 1.81 | 1.31 | -- | -- | -- | 0.598 | 16.2 | -- | -- | -- | -- |
| 111.99 | 0.493 | 12.4 | 1.46 | -- | 1.68 | -- | -- | 0.343 | -- | 23.38 | 82 | -- | -- |
| 139.05 | 0.549 | 12.5 | -- | 0.797 | 1.94 | -- | -- | 0.165 | 17.2 | 13.4 | 63 | -- | -- |
| 186.61 | 0.638 | 12.4 | 1.76 | -- | -- | -- | -- | 0.563 | -- | -- | -- | -- | -- |
| 180.22 | 0.628 | 12.4 | -- | 1.27 | -- | -- | -- | 0.396 | 16.3 | -- | -- | -- | -- |
| 164.14 | 0.597 | 12.5 | -- | -- | 2.48 | -- | -- | 0.0808 | -- | 15.31 | 101 | -- | -- |
| 267.95 | 0.764 | 12.4 | -- | -- | -- | -- | -- | 0.368 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.75 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 2 | 67.16 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 9 | 67.97 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 12 | 68.29 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 17 | 68.46 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 21 | 68.59 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 2 |
| 36 | 69.39 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 43 | 69.74 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 61 | 70.02 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 80 | 70.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 128 | 71.29 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 17 |
| 154 | 71.91 | temperature | 20 | 30 | > th | dose dependent | sin | 2 | NA |
| 185 | 72.29 | temperature | 25 | 90 | > th | dose dependent | sin | 6 | NA |
| 194 | 72.39 | temperature | 30 | 30 | < th | dose dependent | sin | 1 | NA |
| 215 | 72.60 | temperature | 10 | 30 | > th | dose dependent | sin | 2 | NA |
| 230 | 72.69 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 15 |
| 372 | 73.67 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 4 |
| 410 | 73.96 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 6 |
| 501 | 74.42 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 2 |
| 515 | 74.48 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 5 |
| 596 | 74.89 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 3 |
| 597 | 74.89 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 15 |
| 705 | 75.38 | radiation | 1 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 753 | 75.63 | radiation | 1 | 270 | < th | dose independent | rect. | 3 | 15 |
| 757 | 75.64 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 14 |
| 845 | 75.99 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 19 |
| 902 | 76.18 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 913 | 76.24 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 17 |
| 980 | 76.51 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 16 |
| 988 | 76.54 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 3 | 5 |