BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0549800 Os07g0549800|AK120874
(133 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0549800 Similar to RGP-3 (Fragment) 203 3e-53
Os08g0139000 Similar to RNA-binding glycine rich protein (R... 154 2e-38
Os03g0278800 RNA-binding region RNP-1 (RNA recognition moti... 108 1e-24
Os10g0321700 Similar to Ribonucleoprotein like protein 82 2e-16
Os12g0502200 Similar to Low temperature-responsive RNA-bind... 80 4e-16
Os01g0916600 RNA-binding region RNP-1 (RNA recognition moti... 80 5e-16
Os02g0730800 RNA-binding region RNP-1 (RNA recognition moti... 79 8e-16
Os07g0602600 Similar to RNA binding protein 71 2e-13
Os01g0974600 Similar to RNA-binding glycine rich protein (R... 67 3e-12
Os03g0265600 Similar to Transformer-2-like protein 67 4e-12
Os12g0632000 Similar to Glycine-rich RNA-binding protein 1 ... 66 6e-12
Os01g0367300 RNA-binding region RNP-1 (RNA recognition moti... 65 1e-11
Os07g0623300 Similar to Splicing factor SC35 65 1e-11
AK111046 65 2e-11
Os09g0565200 Similar to Nucleic acid-binding protein precursor 64 2e-11
Os03g0670700 Similar to Glycine-rich RNA-binding, abscisic ... 64 2e-11
Os08g0486200 Similar to Splicing factor SC35 64 4e-11
Os03g0836200 Similar to RNA-binding protein RZ-1 62 8e-11
>Os07g0549800 Similar to RGP-3 (Fragment)
Length = 133
Score = 203 bits (516), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 103/125 (82%), Positives = 103/125 (82%)
Query: 9 GFRRMFSVSGFTXXXXXXXXXXXXXCNNLFVSGLNKRTTSDGLREAFSKFGQVIEARVIT 68
GFRRMFSVSGFT CNNLFVSGLNKRTTSDGLREAFSKFGQVIEARVIT
Sbjct: 9 GFRRMFSVSGFTPPPPPAARPLADPCNNLFVSGLNKRTTSDGLREAFSKFGQVIEARVIT 68
Query: 69 DRISGYSRGFGFVKYATVEEAGEGIKGMDGKFLDGWVIFAEYAKQREXXXXXXXXXSTSY 128
DRISGYSRGFGFVKYATVEEAGEGIKGMDGKFLDGWVIFAEYAKQRE STSY
Sbjct: 69 DRISGYSRGFGFVKYATVEEAGEGIKGMDGKFLDGWVIFAEYAKQREAQQPAQPAASTSY 128
Query: 129 QYSNQ 133
QYSNQ
Sbjct: 129 QYSNQ 133
>Os08g0139000 Similar to RNA-binding glycine rich protein (RGP-2)
Length = 141
Score = 154 bits (388), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 69/106 (65%), Positives = 87/106 (82%)
Query: 9 GFRRMFSVSGFTXXXXXXXXXXXXXCNNLFVSGLNKRTTSDGLREAFSKFGQVIEARVIT 68
GFRRMFS+S F+ NLF+SGL+KRTT+DGL+EAF+KFG+VI ARV+T
Sbjct: 10 GFRRMFSISAFSPPKPPTPPPKADPSPNLFISGLSKRTTTDGLKEAFAKFGEVIHARVVT 69
Query: 69 DRISGYSRGFGFVKYATVEEAGEGIKGMDGKFLDGWVIFAEYAKQR 114
DR++G+S+GFGFV+YATVE+A +GI+GMDGKFLDGWVIFAEYA+ R
Sbjct: 70 DRVTGFSKGFGFVRYATVEDAAKGIEGMDGKFLDGWVIFAEYARPR 115
>Os03g0278800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 173
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 67/92 (72%)
Query: 37 LFVSGLNKRTTSDGLREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIKGM 96
LF+SGL++ TT + L+ AF+ FGQ++EA+VITDRISG S+GFGFV+YAT+EEA + M
Sbjct: 69 LFISGLSRLTTDEKLKNAFAPFGQLLEAKVITDRISGRSKGFGFVRYATLEEAENARQEM 128
Query: 97 DGKFLDGWVIFAEYAKQREXXXXXXXXXSTSY 128
+ KFLDGWVIF + AK R+ +S+
Sbjct: 129 NAKFLDGWVIFVDPAKPRQQKPAPRPDTDSSH 160
>Os10g0321700 Similar to Ribonucleoprotein like protein
Length = 317
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 51/77 (66%)
Query: 37 LFVSGLNKRTTSDGLREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIKGM 96
LF+ G++ T L+EAF+ +G+VIEARVI DR +G SRGFGFV Y + +EA I GM
Sbjct: 33 LFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITGM 92
Query: 97 DGKFLDGWVIFAEYAKQ 113
DGK L G ++ YA
Sbjct: 93 DGKDLQGRIVRVSYAHD 109
>Os12g0502200 Similar to Low temperature-responsive RNA-binding protein
Length = 258
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 51/78 (65%)
Query: 37 LFVSGLNKRTTSDGLREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIKGM 96
LFV GL+ T LR+ F+ +GQVIEA++I DR +G SRGFGF+ YA+ EEA I +
Sbjct: 33 LFVGGLSYGTDEQSLRDTFANYGQVIEAKIINDRETGRSRGFGFITYASSEEASAAITAL 92
Query: 97 DGKFLDGWVIFAEYAKQR 114
DGK LDG I A +R
Sbjct: 93 DGKDLDGRNIRVNTANER 110
>Os01g0916600 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 150
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 51/79 (64%)
Query: 37 LFVSGLNKRTTSDGLREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIKGM 96
LFV GL+ T D L+EAF+ FG V EARVI DR SG SRGFGFV +A ++A + M
Sbjct: 39 LFVGGLSWNTNDDSLKEAFTSFGDVTEARVINDRESGRSRGFGFVSFANGDDAKSAMDAM 98
Query: 97 DGKFLDGWVIFAEYAKQRE 115
DGK L+G I +A +R
Sbjct: 99 DGKELEGRSIRVNFANERP 117
>Os02g0730800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 399
Score = 79.3 bits (194), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 53/78 (67%)
Query: 37 LFVSGLNKRTTSDGLREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIKGM 96
LFV+GL+ T+ LR AF FG+++E ++I D+IS S+G+ F++Y T E G +K M
Sbjct: 297 LFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKAM 356
Query: 97 DGKFLDGWVIFAEYAKQR 114
+G+ ++GW+I + AK R
Sbjct: 357 NGQIINGWMIVVDVAKHR 374
>Os07g0602600 Similar to RNA binding protein
Length = 238
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 46/70 (65%)
Query: 37 LFVSGLNKRTTSDGLREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIKGM 96
LFV GL+ T L++ FS +G V+EAR+I DR +G S+G+GF+ Y + EEA + M
Sbjct: 33 LFVGGLSYATDDTTLKDVFSHYGDVLEARIIIDRDTGKSKGYGFITYTSSEEAAAAVTAM 92
Query: 97 DGKFLDGWVI 106
DGK L G ++
Sbjct: 93 DGKDLQGRIV 102
>Os01g0974600 Similar to RNA-binding glycine rich protein (RGP-2)
Length = 116
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 37 LFVSGLNKRTTSDGLREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIKGM 96
LF+ GL+ T L++AFS+ G +I+ +VI ++G S+G+GFVK+A+ +EA + M
Sbjct: 39 LFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHKM 98
Query: 97 DGKFLDGWVIFAEYA 111
G+ +DG I YA
Sbjct: 99 GGEVIDGRNIRVHYA 113
>Os03g0265600 Similar to Transformer-2-like protein
Length = 125
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%)
Query: 35 NNLFVSGLNKRTTSDGLREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIK 94
NNL+V+GL+ R T L + FS G+VI+A ++ D + SRGFGFV ATV+EA IK
Sbjct: 43 NNLYVTGLSARVTDRDLEKHFSAEGEVIDASIVLDPWTRESRGFGFVTMATVKEADLCIK 102
Query: 95 GMDGKFLDGWVIFAE 109
+D L+G VI E
Sbjct: 103 YLDRSVLEGRVITVE 117
>Os12g0632000 Similar to Glycine-rich RNA-binding protein 1 (Fragment)
Length = 162
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%)
Query: 38 FVSGLNKRTTSDGLREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIKGMD 97
FV GL T L AFS FG+++E+++I DR +G SRGFGFV +++ + + I+GM+
Sbjct: 11 FVGGLAWATDDRSLEAAFSTFGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMN 70
Query: 98 GKFLDGWVIFAEYAKQR 114
GK LDG I A+ R
Sbjct: 71 GKELDGRNITVNEAQSR 87
>Os01g0367300 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 698
Score = 65.5 bits (158), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 46/77 (59%)
Query: 36 NLFVSGLNKRTTSDGLREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIKG 95
NLFV+G + TT L + FSK+G+V ARV+ D+ SG SRGFGF+ E+A I+
Sbjct: 618 NLFVAGFSYATTERDLEKKFSKYGRVTSARVVRDKRSGDSRGFGFLSLEKDEDADAAIRA 677
Query: 96 MDGKFLDGWVIFAEYAK 112
D +G +I E +K
Sbjct: 678 CDETEWNGRIILVEKSK 694
>Os07g0623300 Similar to Splicing factor SC35
Length = 275
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%)
Query: 36 NLFVSGLNKRTTSDGLREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIKG 95
+L V + RTT+D L F K+G+V++ + DR +G SRGF FV+Y +EA + +
Sbjct: 17 SLLVLNITFRTTADDLSPLFEKYGEVVDIYIPRDRRTGDSRGFAFVRYKYEDEAQKAVDR 76
Query: 96 MDGKFLDGWVIFAEYAK 112
+DG+ +DG I ++AK
Sbjct: 77 LDGRVVDGREIMVQFAK 93
>AK111046
Length = 231
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%)
Query: 38 FVSGLNKRTTSDGLREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIKGMD 97
FV GL T L AFS +G+++++++I DR +G SRGFGFV +++ + + I+GM+
Sbjct: 11 FVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRDAIEGMN 70
Query: 98 GKFLDGWVIFAEYAKQR 114
GK LDG I A+ R
Sbjct: 71 GKELDGRNITVNEAQSR 87
>Os09g0565200 Similar to Nucleic acid-binding protein precursor
Length = 322
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 37 LFVSGLNKRTTSDGLREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIKGM 96
++V L + L + FS+ G+V++ARV+ DR +G SRGFGFV AT EE + I +
Sbjct: 239 IYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAAL 298
Query: 97 DGKFLDGWVIFAEYAKQR 114
DG+ LDG + A++R
Sbjct: 299 DGQSLDGRALRVNVAEER 316
>Os03g0670700 Similar to Glycine-rich RNA-binding, abscisic acid-inducible
protein
Length = 196
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%)
Query: 38 FVSGLNKRTTSDGLREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIKGMD 97
FV GL T L AFS +G+++++++I DR +G SRGFGFV +++ + + I+GM+
Sbjct: 11 FVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRDAIEGMN 70
Query: 98 GKFLDGWVIFAEYAKQR 114
GK LDG I A+ R
Sbjct: 71 GKELDGRNITVNEAQSR 87
>Os08g0486200 Similar to Splicing factor SC35
Length = 289
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%)
Query: 36 NLFVSGLNKRTTSDGLREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIKG 95
+L V ++ RTT+D L F ++G+V++ + DR +G SRGF FV+Y EEA + I
Sbjct: 17 SLLVLNISFRTTADDLFPLFDRYGKVVDVFIPRDRRTGDSRGFAFVRYKYAEEAQKAIDR 76
Query: 96 MDGKFLDGWVIFAEYAK 112
+DG+ +DG I ++AK
Sbjct: 77 LDGRNVDGRNIMVQFAK 93
>Os03g0836200 Similar to RNA-binding protein RZ-1
Length = 205
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%)
Query: 37 LFVSGLNKRTTSDGLREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIKGM 96
F+ L+ TT + L++AF KFG + EA+V+ D+ SG SRGFGFV + + + I+GM
Sbjct: 9 CFIGNLSWSTTDESLKDAFGKFGNLTEAKVVFDKYSGRSRGFGFVTFDEKKAMEDAIEGM 68
Query: 97 DGKFLDGWVIFAEYAKQR 114
+G LDG I + A+ +
Sbjct: 69 NGLDLDGRAITVDKAQPQ 86
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,039,874
Number of extensions: 100098
Number of successful extensions: 491
Number of sequences better than 1.0e-10: 18
Number of HSP's gapped: 504
Number of HSP's successfully gapped: 18
Length of query: 133
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 43
Effective length of database: 12,336,541
Effective search space: 530471263
Effective search space used: 530471263
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 150 (62.4 bits)